Wall clock time and date at job start Tue Mar 31 2020 11:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99897 * 2 1 4 4 H 1.48498 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46948 * 299.99711 * 3 2 1 6 6 H 1.48506 * 109.47166 * 59.99897 * 3 2 1 7 7 C 1.37876 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99885 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99746 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47469 * 299.99881 * 9 7 2 11 11 O 1.42897 * 109.47165 * 60.00324 * 9 7 2 12 12 C 1.53004 * 109.46937 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.47239 * 179.97438 * 12 9 7 14 14 C 1.46901 * 111.00307 * 180.02562 * 13 12 9 15 15 H 1.09004 * 109.46945 * 325.00544 * 14 13 12 16 16 C 1.52994 * 109.47437 * 205.00539 * 14 13 12 17 17 C 1.53001 * 109.47203 * 64.99517 * 16 14 13 18 18 C 1.53000 * 109.46886 * 184.99990 * 17 16 14 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.50701 * 109.46834 * 84.99749 * 14 13 12 24 24 C 1.38236 * 119.99752 * 39.73438 * 23 14 13 25 25 C 1.38242 * 119.99888 * 179.78157 * 24 23 14 26 26 C 1.38229 * 119.99634 * 0.44099 * 25 24 23 27 27 C 1.38228 * 120.00444 * 359.81318 * 26 25 24 28 28 C 1.38233 * 120.00253 * 220.00161 * 23 14 13 29 29 H 0.96998 * 119.99897 * 0.02562 * 1 2 3 30 30 H 0.96692 * 114.00705 * 59.99192 * 11 9 7 31 31 H 1.09005 * 109.46879 * 60.00582 * 12 9 7 32 32 H 1.08995 * 109.47427 * 300.00498 * 12 9 7 33 33 H 1.00902 * 111.00049 * 303.96357 * 13 12 9 34 34 H 1.09008 * 109.46970 * 304.99876 * 16 14 13 35 35 H 1.09000 * 109.47017 * 185.00185 * 16 14 13 36 36 H 1.08992 * 109.47514 * 305.00424 * 17 16 14 37 37 H 1.09002 * 109.47398 * 300.00496 * 18 17 16 38 38 H 1.09001 * 109.47194 * 60.00677 * 18 17 16 39 39 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 41 41 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 43 43 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 44 44 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 45 45 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 47 47 H 1.07997 * 120.00167 * 359.97438 * 24 23 14 48 48 H 1.07993 * 119.99770 * 180.27403 * 25 24 23 49 49 H 1.08003 * 119.99491 * 179.83370 * 26 25 24 50 50 H 1.08003 * 120.00561 * 179.97438 * 27 26 25 51 51 H 1.08004 * 120.00005 * 359.97438 * 28 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8902 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6620 0.0005 13 7 1.5109 -4.9343 0.0012 14 6 2.4353 -6.0759 0.0018 15 1 3.3183 -5.8288 -0.5877 16 6 1.7404 -7.2953 -0.6073 17 6 1.4334 -7.0238 -2.0814 18 6 0.6289 -8.1906 -2.6580 19 6 0.3223 -7.9195 -4.1322 20 6 1.6334 -7.7718 -4.9070 21 6 2.4379 -6.6051 -4.3303 22 6 2.7445 -6.8762 -2.8561 23 6 2.8476 -6.3876 1.4174 24 6 1.9188 -6.3186 2.4389 25 6 2.2959 -6.6089 3.7368 26 6 3.6039 -6.9592 4.0144 27 6 4.5339 -7.0230 2.9938 28 6 4.1559 -6.7370 1.6953 29 1 -0.4850 0.8400 -0.0004 30 1 0.9224 -2.5298 -1.9975 31 1 2.8719 -3.6043 0.8906 32 1 2.8721 -3.6043 -0.8893 33 1 0.8746 -4.9841 0.7827 34 1 0.8106 -7.4886 -0.0722 35 1 2.3937 -8.1640 -0.5262 36 1 0.8540 -6.1048 -2.1687 37 1 1.2083 -9.1097 -2.5707 38 1 -0.3050 -8.2960 -2.1058 39 1 -0.2512 -8.7504 -4.5430 40 1 -0.2569 -7.0003 -4.2198 41 1 1.4150 -7.5783 -5.9572 42 1 2.2126 -8.6910 -4.8194 43 1 1.8587 -5.6859 -4.4180 44 1 3.3722 -6.5003 -4.8821 45 1 3.3180 -6.0453 -2.4455 46 1 3.3237 -7.7955 -2.7686 47 1 0.8978 -6.0411 2.2225 48 1 1.5692 -6.5593 4.5341 49 1 3.8991 -7.1834 5.0289 50 1 5.5561 -7.2963 3.2108 51 1 4.8825 -6.7871 0.8978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354473312.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:02 Heat of formation + Delta-G solvation = -60.604828 kcal Electronic energy + Delta-G solvation = -27446.554986 eV Core-core repulsion = 23922.840338 eV Total energy + Delta-G solvation = -3523.714648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.74579 -38.46652 -36.56567 -35.03301 -32.22233 -32.00312 -30.97326 -30.71267 -30.61714 -28.16848 -26.75825 -24.18432 -23.52487 -22.50911 -22.34707 -21.19454 -20.48766 -19.86152 -19.44837 -17.07431 -16.88202 -15.62622 -15.20987 -15.00071 -14.79974 -14.55458 -14.37029 -14.15075 -14.02938 -13.85596 -13.68123 -13.40711 -13.24727 -13.01967 -12.71334 -12.57813 -12.16470 -11.94041 -11.85214 -11.64674 -11.37913 -11.15480 -11.03413 -10.96467 -10.92140 -10.79400 -10.67042 -10.66442 -10.61812 -10.18797 -10.01867 -9.88795 -9.77741 -8.96239 -8.85487 -8.60448 -8.55063 -8.04320 -7.72899 -5.97925 -4.15729 1.43093 1.46554 3.27815 3.36112 3.39440 3.85609 4.38634 4.68240 4.70813 4.84996 4.90180 4.94774 4.97784 5.04199 5.16843 5.29784 5.30913 5.33488 5.44558 5.54536 5.55703 5.62915 5.65078 5.65705 5.72552 5.77433 5.82096 5.99347 6.04495 6.07939 6.10399 6.11770 6.18825 6.24997 6.27149 6.30039 6.38093 6.40442 6.43112 6.51480 6.54724 6.57274 6.58283 6.69957 6.86084 6.90796 7.07288 7.63889 7.73523 7.88051 7.97904 8.24447 8.88420 9.49490 9.65922 11.06237 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007929 B = 0.004665 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.508638 B = 6000.285274 C = 8631.188429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.571 4.571 8 H 0.054 0.946 9 C 0.236 3.764 10 H 0.049 0.951 11 O -0.554 6.554 12 C 0.036 3.964 13 N -0.665 5.665 14 C 0.120 3.880 15 H 0.083 0.917 16 C -0.092 4.092 17 C -0.081 4.081 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.111 4.111 23 C -0.101 4.101 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.130 4.130 27 C -0.121 4.121 28 C -0.116 4.116 29 H 0.259 0.741 30 H 0.342 0.658 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.336 0.664 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.117 0.883 50 H 0.117 0.883 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 -18.415 -1.146 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.610 4.610 8 H 0.072 0.928 9 C 0.178 3.822 10 H 0.067 0.933 11 O -0.356 6.356 12 C -0.093 4.093 13 N -0.295 5.295 14 C 0.010 3.990 15 H 0.101 0.899 16 C -0.130 4.130 17 C -0.099 4.099 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.149 4.149 23 C -0.103 4.103 24 C -0.133 4.133 25 C -0.134 4.134 26 C -0.148 4.148 27 C -0.139 4.139 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.185 0.815 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.155 0.845 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.141 0.859 48 H 0.138 0.862 49 H 0.135 0.865 50 H 0.135 0.865 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.739 -18.343 -1.381 18.996 hybrid contribution 1.449 1.082 0.766 1.964 sum 6.188 -17.261 -0.615 18.347 Atomic orbital electron populations 1.70094 1.05877 1.26200 1.47292 1.25014 0.94656 0.99013 0.93910 0.86656 0.80241 0.84036 0.77675 1.19774 1.20859 1.20943 1.21679 0.93136 0.91640 1.54534 0.92780 1.19266 0.87763 0.88858 0.86301 0.93290 1.86548 1.37739 1.96311 1.14972 1.22891 0.97452 0.89902 0.99045 1.60748 1.18196 1.01107 1.49473 1.20756 0.95987 0.92377 0.89922 0.89919 1.21542 0.99985 0.95704 0.95734 1.21084 0.96283 0.99555 0.92989 1.21573 0.99773 0.98209 0.95447 1.21520 0.97130 1.01509 0.95521 1.21516 0.96580 0.98577 0.98784 1.21524 0.99537 0.98613 0.96046 1.21582 0.97512 1.00924 0.94843 1.20912 0.93764 0.98105 0.97495 1.21006 0.99662 0.99929 0.92706 1.21115 0.96282 0.99437 0.96590 1.21086 0.93672 1.01083 0.98927 1.21102 0.99228 1.00445 0.93130 1.21046 0.95743 1.00072 0.96622 0.93116 0.81461 0.96110 0.92285 0.84451 0.92072 0.92666 0.88731 0.92856 0.92308 0.92725 0.91708 0.92598 0.92590 0.91548 0.92689 0.91912 0.93030 0.85927 0.86243 0.86501 0.86472 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.50 12.84 55.43 0.71 -24.79 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.57 -15.72 8.76 -34.44 -0.30 -16.02 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.24 5.92 3.03 -27.88 -0.08 5.84 16 10 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 11 O -0.55 -14.23 12.59 -35.23 -0.44 -14.67 16 12 C 0.04 0.73 5.08 -3.82 -0.02 0.71 16 13 N -0.66 -11.23 5.47 -107.95 -0.59 -11.82 16 14 C 0.12 1.68 2.09 -68.87 -0.14 1.54 16 15 H 0.08 1.19 5.86 -51.93 -0.30 0.89 16 16 C -0.09 -1.13 4.34 -26.73 -0.12 -1.25 16 17 C -0.08 -0.99 2.14 -90.62 -0.19 -1.19 16 18 C -0.11 -1.23 5.20 -26.73 -0.14 -1.37 16 19 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 20 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 21 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 22 C -0.11 -1.30 4.96 -26.73 -0.13 -1.43 16 23 C -0.10 -1.39 4.71 -104.62 -0.49 -1.89 16 24 C -0.11 -1.57 9.12 -39.58 -0.36 -1.93 16 25 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 26 C -0.13 -1.52 10.05 -39.59 -0.40 -1.91 16 27 C -0.12 -1.43 10.05 -39.59 -0.40 -1.83 16 28 C -0.12 -1.49 9.67 -39.58 -0.38 -1.87 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.34 8.00 9.04 45.56 0.41 8.41 16 31 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 32 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 33 H 0.34 5.78 6.34 -39.29 -0.25 5.54 16 34 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.43 7.62 -51.93 -0.40 1.04 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.80 6.46 -51.93 -0.34 0.47 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.12 1.64 6.50 -52.49 -0.34 1.30 16 48 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 49 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 50 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 51 H 0.12 1.34 8.04 -52.48 -0.42 0.92 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -29.77 398.01 -11.83 -41.60 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: -8.35 Total: 13.97 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: -4.13 Total: -26.55 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.12 Total: -36.61 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.44 Total: -14.67 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.77 -11.83 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354473312.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.008 kcal (2) G-P(sol) polarization free energy of solvation -29.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds