Wall clock time and date at job start Tue Mar 31 2020 11:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99897 * 2 1 4 4 H 1.48498 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46948 * 299.99711 * 3 2 1 6 6 H 1.48506 * 109.47166 * 59.99897 * 3 2 1 7 7 C 1.37876 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99885 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99746 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.47469 * 299.99881 * 9 7 2 11 11 O 1.42897 * 109.47165 * 60.00324 * 9 7 2 12 12 C 1.53004 * 109.46937 * 179.97438 * 9 7 2 13 13 N 1.46903 * 109.47239 * 179.97438 * 12 9 7 14 14 C 1.46901 * 111.00307 * 180.02562 * 13 12 9 15 15 H 1.09004 * 109.46945 * 325.00544 * 14 13 12 16 16 C 1.52994 * 109.47437 * 205.00539 * 14 13 12 17 17 C 1.53001 * 109.47203 * 64.99517 * 16 14 13 18 18 C 1.53000 * 109.46886 * 184.99990 * 17 16 14 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.50701 * 109.46834 * 84.99749 * 14 13 12 24 24 C 1.38236 * 119.99752 * 39.73438 * 23 14 13 25 25 C 1.38242 * 119.99888 * 179.78157 * 24 23 14 26 26 C 1.38229 * 119.99634 * 0.44099 * 25 24 23 27 27 C 1.38228 * 120.00444 * 359.81318 * 26 25 24 28 28 C 1.38233 * 120.00253 * 220.00161 * 23 14 13 29 29 H 0.96998 * 119.99897 * 0.02562 * 1 2 3 30 30 H 0.96692 * 114.00705 * 59.99192 * 11 9 7 31 31 H 1.09005 * 109.46879 * 60.00582 * 12 9 7 32 32 H 1.08995 * 109.47427 * 300.00498 * 12 9 7 33 33 H 1.00902 * 111.00049 * 303.96357 * 13 12 9 34 34 H 1.09008 * 109.46970 * 304.99876 * 16 14 13 35 35 H 1.09000 * 109.47017 * 185.00185 * 16 14 13 36 36 H 1.08992 * 109.47514 * 305.00424 * 17 16 14 37 37 H 1.09002 * 109.47398 * 300.00496 * 18 17 16 38 38 H 1.09001 * 109.47194 * 60.00677 * 18 17 16 39 39 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 40 40 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 41 41 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 43 43 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 44 44 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 45 45 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 47 47 H 1.07997 * 120.00167 * 359.97438 * 24 23 14 48 48 H 1.07993 * 119.99770 * 180.27403 * 25 24 23 49 49 H 1.08003 * 119.99491 * 179.83370 * 26 25 24 50 50 H 1.08003 * 120.00561 * 179.97438 * 27 26 25 51 51 H 1.08004 * 120.00005 * 359.97438 * 28 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8902 11 8 0.4300 -2.5751 -1.1665 12 6 2.2454 -3.6620 0.0005 13 7 1.5109 -4.9343 0.0012 14 6 2.4353 -6.0759 0.0018 15 1 3.3183 -5.8288 -0.5877 16 6 1.7404 -7.2953 -0.6073 17 6 1.4334 -7.0238 -2.0814 18 6 0.6289 -8.1906 -2.6580 19 6 0.3223 -7.9195 -4.1322 20 6 1.6334 -7.7718 -4.9070 21 6 2.4379 -6.6051 -4.3303 22 6 2.7445 -6.8762 -2.8561 23 6 2.8476 -6.3876 1.4174 24 6 1.9188 -6.3186 2.4389 25 6 2.2959 -6.6089 3.7368 26 6 3.6039 -6.9592 4.0144 27 6 4.5339 -7.0230 2.9938 28 6 4.1559 -6.7370 1.6953 29 1 -0.4850 0.8400 -0.0004 30 1 0.9224 -2.5298 -1.9975 31 1 2.8719 -3.6043 0.8906 32 1 2.8721 -3.6043 -0.8893 33 1 0.8746 -4.9841 0.7827 34 1 0.8106 -7.4886 -0.0722 35 1 2.3937 -8.1640 -0.5262 36 1 0.8540 -6.1048 -2.1687 37 1 1.2083 -9.1097 -2.5707 38 1 -0.3050 -8.2960 -2.1058 39 1 -0.2512 -8.7504 -4.5430 40 1 -0.2569 -7.0003 -4.2198 41 1 1.4150 -7.5783 -5.9572 42 1 2.2126 -8.6910 -4.8194 43 1 1.8587 -5.6859 -4.4180 44 1 3.3722 -6.5003 -4.8821 45 1 3.3180 -6.0453 -2.4455 46 1 3.3237 -7.7955 -2.7686 47 1 0.8978 -6.0411 2.2225 48 1 1.5692 -6.5593 4.5341 49 1 3.8991 -7.1834 5.0289 50 1 5.5561 -7.2963 3.2108 51 1 4.8825 -6.7871 0.8978 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354473312.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:01 Heat of formation + Delta-G solvation = -77.010268 kcal Electronic energy + Delta-G solvation = -27447.266379 eV Core-core repulsion = 23922.840338 eV Total energy + Delta-G solvation = -3524.426041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79575 -39.39447 -38.18491 -36.55519 -34.22429 -33.40028 -32.01955 -31.76388 -31.51764 -29.74689 -28.14861 -25.87579 -24.64614 -23.50890 -23.32771 -22.38338 -22.06552 -20.92512 -20.42271 -18.97289 -18.12029 -16.70727 -16.66844 -16.40897 -16.25847 -15.98550 -15.72980 -15.32471 -15.25590 -14.99926 -14.81537 -14.70378 -14.34184 -14.23624 -14.16118 -13.73821 -13.28667 -13.14245 -13.00208 -12.91301 -12.83031 -12.73952 -12.68611 -12.49224 -12.13187 -12.02545 -11.91452 -11.85099 -11.68282 -11.60201 -11.16469 -11.01202 -10.82487 -10.71812 -10.70783 -10.06067 -9.82631 -9.58744 -9.17573 -8.13325 -6.38962 0.45286 0.49673 1.38306 1.39641 1.51626 2.38129 2.88172 3.12735 3.36734 3.67505 3.91159 3.95590 4.00164 4.05596 4.13832 4.27526 4.31020 4.33491 4.37396 4.44734 4.51126 4.60875 4.61483 4.66918 4.70715 4.73788 4.75785 4.79495 4.85143 4.91521 5.02162 5.08833 5.10279 5.13511 5.19533 5.21297 5.24888 5.35731 5.46852 5.47703 5.51975 5.57864 5.59917 5.61701 5.62672 5.65121 5.77025 5.83976 6.06484 6.12690 6.26955 6.52195 6.74997 7.35197 7.62867 8.91249 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.007929 B = 0.004665 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3530.508638 B = 6000.285274 C = 8631.188429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.028 3.972 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.586 4.586 8 H 0.056 0.944 9 C 0.238 3.762 10 H 0.014 0.986 11 O -0.567 6.567 12 C 0.062 3.938 13 N -0.665 5.665 14 C 0.127 3.873 15 H 0.081 0.919 16 C -0.083 4.083 17 C -0.076 4.076 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.107 4.107 23 C -0.116 4.116 24 C -0.134 4.134 25 C -0.126 4.126 26 C -0.132 4.132 27 C -0.123 4.123 28 C -0.127 4.127 29 H 0.261 0.739 30 H 0.351 0.649 31 H 0.012 0.988 32 H 0.061 0.939 33 H 0.332 0.668 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.115 0.885 48 H 0.135 0.865 49 H 0.143 0.857 50 H 0.144 0.856 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.452 -19.710 -1.096 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.625 4.625 8 H 0.074 0.926 9 C 0.180 3.820 10 H 0.032 0.968 11 O -0.370 6.370 12 C -0.067 4.067 13 N -0.295 5.295 14 C 0.017 3.983 15 H 0.099 0.901 16 C -0.121 4.121 17 C -0.095 4.095 18 C -0.147 4.147 19 C -0.157 4.157 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.118 4.118 24 C -0.153 4.153 25 C -0.144 4.144 26 C -0.150 4.150 27 C -0.141 4.141 28 C -0.145 4.145 29 H 0.070 0.930 30 H 0.196 0.804 31 H 0.030 0.970 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.133 0.867 48 H 0.153 0.847 49 H 0.161 0.839 50 H 0.161 0.839 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.711 -19.655 -1.335 20.812 hybrid contribution 0.825 1.434 0.787 1.831 sum 7.535 -18.222 -0.548 19.726 Atomic orbital electron populations 1.70227 1.07601 1.27221 1.48544 1.25864 0.95447 1.02776 0.93402 0.85546 0.79123 0.79353 0.77769 1.18860 1.20329 1.20492 1.22054 0.93382 0.92918 1.54104 0.92621 1.19105 0.87694 0.90326 0.84869 0.96822 1.86493 1.38502 1.96446 1.15588 1.22392 0.95880 0.89880 0.98581 1.60685 1.18613 1.00794 1.49440 1.20725 0.95318 0.91604 0.90670 0.90139 1.21475 0.99805 0.95344 0.95454 1.20980 0.96489 0.98710 0.93285 1.21542 0.99537 0.97983 0.95609 1.21524 0.97502 1.01281 0.95409 1.21498 0.96125 0.98470 0.98989 1.21523 0.99923 0.98362 0.95985 1.21539 0.96955 1.01044 0.94936 1.20880 0.94555 0.99372 0.96985 1.21096 0.99535 1.01019 0.93641 1.21385 0.97364 0.99212 0.96426 1.21454 0.93164 1.00012 1.00320 1.21458 1.00573 0.99452 0.92592 1.21279 0.95420 1.00056 0.97779 0.93024 0.80449 0.97008 0.92087 0.84796 0.92687 0.91057 0.92090 0.91423 0.92692 0.91238 0.93385 0.91833 0.91309 0.93521 0.91729 0.93330 0.91489 0.86718 0.84742 0.83902 0.83855 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.49 12.84 21.45 0.28 -54.21 16 2 C 0.03 1.56 5.40 84.65 0.46 2.02 16 3 Si 0.96 43.93 29.54 68.60 2.03 45.95 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.59 -32.77 8.76 25.60 0.22 -32.54 16 8 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 9 C 0.24 12.37 3.03 29.85 0.09 12.46 16 10 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 11 O -0.57 -30.19 12.59 -148.98 -1.88 -32.06 16 12 C 0.06 2.59 5.08 86.30 0.44 3.03 16 13 N -0.66 -23.29 5.47 -495.44 -2.71 -26.00 16 14 C 0.13 3.56 2.09 44.17 0.09 3.65 16 15 H 0.08 2.30 5.86 -2.39 -0.01 2.29 16 16 C -0.08 -2.01 4.34 30.59 0.13 -1.88 16 17 C -0.08 -1.86 2.14 -10.79 -0.02 -1.88 16 18 C -0.11 -2.28 5.20 30.59 0.16 -2.13 16 19 C -0.12 -2.40 5.92 30.59 0.18 -2.22 16 20 C -0.11 -2.10 5.92 30.60 0.18 -1.92 16 21 C -0.12 -2.61 5.92 30.60 0.18 -2.42 16 22 C -0.11 -2.42 4.96 30.59 0.15 -2.27 16 23 C -0.12 -3.17 4.71 -19.87 -0.09 -3.26 16 24 C -0.13 -3.71 9.12 22.27 0.20 -3.50 16 25 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 26 C -0.13 -2.79 10.05 22.27 0.22 -2.57 16 27 C -0.12 -2.61 10.05 22.27 0.22 -2.38 16 28 C -0.13 -3.06 9.67 22.27 0.22 -2.85 16 29 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 30 H 0.35 16.95 9.04 -74.06 -0.67 16.28 16 31 H 0.01 0.51 8.00 -2.38 -0.02 0.49 16 32 H 0.06 2.50 8.06 -2.39 -0.02 2.48 16 33 H 0.33 12.07 6.34 -89.69 -0.57 11.50 16 34 H 0.05 1.40 8.14 -2.38 -0.02 1.39 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.92 7.62 -2.39 -0.02 1.90 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.05 1.22 6.46 -2.39 -0.02 1.21 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.11 3.23 6.50 -2.91 -0.02 3.21 16 48 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 49 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 50 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 51 H 0.13 2.72 8.04 -2.91 -0.02 2.70 16 Total: -1.00 -64.47 398.01 0.64 -63.83 By element: Atomic # 1 Polarization: 46.30 SS G_CDS: -0.34 Total: 45.96 kcal Atomic # 6 Polarization: -46.73 SS G_CDS: 3.26 Total: -43.47 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -2.44 Total: -80.21 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.88 Total: -32.06 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -64.47 0.64 -63.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354473312.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.180 kcal (2) G-P(sol) polarization free energy of solvation -64.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds