Wall clock time and date at job start Tue Mar 31 2020 12:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47002 * 2 1 4 4 C 1.53001 * 109.47108 * 119.99783 * 2 1 3 5 5 C 1.53001 * 109.47035 * 65.00523 * 4 2 1 6 6 C 1.52998 * 109.47495 * 74.16944 * 5 4 2 7 7 C 1.52993 * 109.46913 * 76.07541 * 6 5 4 8 8 C 1.52999 * 109.47302 * 170.75326 * 7 6 5 9 9 C 1.53005 * 109.47301 * 290.74679 * 7 6 5 10 10 C 1.50695 * 109.47058 * 194.17469 * 5 4 2 11 11 O 1.21285 * 120.00103 * 349.57254 * 10 5 4 12 12 N 1.34779 * 119.99760 * 169.57588 * 10 5 4 13 13 C 1.39245 * 119.99617 * 182.60245 * 12 10 5 14 14 C 1.39482 * 119.83155 * 149.60900 * 13 12 10 15 15 C 1.36370 * 120.16820 * 180.29590 * 14 13 12 16 16 C 1.40875 * 119.82844 * 359.48144 * 15 14 13 17 17 C 1.41150 * 120.16435 * 180.25241 * 16 15 14 18 18 H 1.08005 * 119.99875 * 204.82382 * 17 16 15 19 19 C 1.39905 * 120.00224 * 24.82805 * 17 16 15 20 20 N 1.30874 * 119.99949 * 14.20840 * 19 17 16 21 21 Si 1.86800 * 119.99895 * 194.21338 * 19 17 16 22 22 H 1.48508 * 109.47025 * 89.99840 * 21 19 17 23 23 H 1.48499 * 109.46928 * 209.99507 * 21 19 17 24 24 H 1.48496 * 109.46985 * 329.99827 * 21 19 17 25 25 C 1.40869 * 119.66958 * 0.51324 * 16 15 14 26 26 C 1.36379 * 119.83097 * 359.73962 * 25 16 15 27 27 H 1.09001 * 109.47442 * 59.99869 * 1 2 3 28 28 H 1.09001 * 109.47201 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47068 * 300.00296 * 1 2 3 30 30 H 1.08996 * 109.46934 * 240.00345 * 2 1 3 31 31 H 1.09003 * 109.47283 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47129 * 300.00322 * 3 2 1 33 33 H 1.09003 * 109.47450 * 59.99938 * 3 2 1 34 34 H 1.08995 * 109.46956 * 305.00081 * 4 2 1 35 35 H 1.09005 * 109.46787 * 184.99771 * 4 2 1 36 36 H 1.09007 * 109.46902 * 314.17150 * 5 4 2 37 37 H 1.08997 * 109.47292 * 196.07370 * 6 5 4 38 38 H 1.09001 * 109.47099 * 316.07617 * 6 5 4 39 39 H 1.08996 * 109.47303 * 50.74927 * 7 6 5 40 40 H 1.08996 * 109.47267 * 59.99579 * 8 7 6 41 41 H 1.08999 * 109.47291 * 180.02562 * 8 7 6 42 42 H 1.09010 * 109.46398 * 299.99734 * 8 7 6 43 43 H 1.08998 * 109.47067 * 87.52364 * 9 7 6 44 44 H 1.08996 * 109.47469 * 207.52215 * 9 7 6 45 45 H 1.09000 * 109.46831 * 327.52753 * 9 7 6 46 46 H 0.96997 * 120.00132 * 2.59961 * 12 10 5 47 47 H 1.07997 * 119.91371 * 0.02562 * 14 13 12 48 48 H 1.07998 * 120.08812 * 179.70025 * 15 14 13 49 49 H 0.96992 * 119.99928 * 180.02562 * 20 19 17 50 50 H 1.07996 * 120.08351 * 179.71062 * 25 16 15 51 51 H 1.07996 * 119.91772 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1955 1.1880 6 6 2.5103 -2.9225 0.1649 7 6 3.8981 -3.1650 0.7616 8 6 4.6962 -4.0876 -0.1618 9 6 4.6315 -1.8300 0.9064 10 6 1.8210 -2.8241 2.5449 11 8 2.4088 -2.2208 3.4175 12 7 1.3339 -4.0569 2.7887 13 6 1.4577 -4.6159 4.0580 14 6 0.4923 -5.5107 4.5193 15 6 0.6036 -6.0575 5.7636 16 6 1.7029 -5.7251 6.5794 17 6 1.8280 -6.2910 7.8664 18 1 2.3951 -5.7781 8.6291 19 6 1.2173 -7.5165 8.1541 20 7 0.7725 -8.2703 7.1811 21 14 1.0368 -8.0766 9.9269 22 1 -0.2553 -7.5874 10.4715 23 1 1.0675 -9.5602 9.9828 24 1 2.1545 -7.5275 10.7358 25 6 2.6739 -4.8207 6.1064 26 6 2.5463 -4.2779 4.8618 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6054 -0.2617 2.1369 35 1 3.1263 -0.6443 1.2951 36 1 0.5892 -2.2730 0.8917 37 1 2.0527 -3.8781 -0.0908 38 1 2.6027 -2.3119 -0.7333 39 1 3.7959 -3.6315 1.7414 40 1 4.7984 -3.6211 -1.1416 41 1 5.6847 -4.2607 0.2635 42 1 4.1737 -5.0387 -0.2650 43 1 4.3835 -1.3817 1.8685 44 1 5.7069 -1.9982 0.8504 45 1 4.3263 -1.1589 0.1035 46 1 0.8970 -4.5547 2.0800 47 1 -0.3478 -5.7677 3.8912 48 1 -0.1472 -6.7465 6.1214 49 1 0.3488 -9.1197 7.3805 50 1 3.5169 -4.5575 6.7280 51 1 3.2897 -3.5841 4.4980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355889172.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:27 Heat of formation + Delta-G solvation = -44.823316 kcal Electronic energy + Delta-G solvation = -27326.530074 eV Core-core repulsion = 23803.499764 eV Total energy + Delta-G solvation = -3523.030310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -40.34583 -38.04381 -36.72907 -35.46037 -34.37927 -32.94537 -31.39274 -29.52881 -28.80559 -27.77744 -27.16067 -26.19612 -25.23380 -23.29710 -21.53094 -20.71169 -20.50748 -19.76596 -18.79170 -17.35631 -16.73775 -16.30603 -15.71355 -15.46740 -15.14940 -14.46751 -14.30944 -13.96793 -13.82793 -13.59541 -13.52293 -12.88932 -12.82397 -12.63178 -12.44952 -12.36435 -12.19566 -12.12097 -12.09159 -11.85896 -11.70833 -11.39657 -11.35634 -11.12334 -11.03530 -10.93559 -10.89861 -10.66786 -10.54812 -10.49309 -10.38244 -10.07563 -9.83637 -9.66599 -9.37628 -8.97924 -8.61085 -7.50286 -6.92526 -6.71559 -4.27031 2.60903 3.04084 3.08326 3.11980 3.14575 3.44631 3.80393 3.94635 4.64392 4.65596 4.72406 4.77631 4.86457 4.90530 4.97406 5.19656 5.30135 5.40783 5.44128 5.51425 5.56355 5.63932 5.69418 5.70922 5.74474 5.76922 5.83394 5.86825 5.87983 5.96937 6.00345 6.03913 6.14916 6.16447 6.22992 6.32002 6.38362 6.44006 6.51893 6.54462 6.82348 6.97288 7.07440 7.23959 7.33996 7.64962 7.79008 7.94318 8.08061 8.32289 8.37976 8.63516 8.84221 8.92182 9.04912 10.20841 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.002819 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.135335 B = 9931.602496 C =10336.869963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.122 4.122 5 C -0.108 4.108 6 C -0.104 4.104 7 C -0.103 4.103 8 C -0.145 4.145 9 C -0.152 4.152 10 C 0.507 3.493 11 O -0.533 6.533 12 N -0.651 5.651 13 C -0.003 4.003 14 C -0.119 4.119 15 C -0.152 4.152 16 C 0.102 3.898 17 C -0.457 4.457 18 H 0.077 0.923 19 C 0.073 3.927 20 N -0.798 5.798 21 Si 0.910 3.090 22 H -0.268 1.268 23 H -0.278 1.278 24 H -0.262 1.262 25 C -0.216 4.216 26 C -0.083 4.083 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.049 0.951 45 H 0.056 0.944 46 H 0.393 0.607 47 H 0.088 0.912 48 H 0.125 0.875 49 H 0.279 0.721 50 H 0.093 0.907 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.789 9.858 -16.058 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.159 4.159 5 C -0.130 4.130 6 C -0.142 4.142 7 C -0.122 4.122 8 C -0.202 4.202 9 C -0.209 4.209 10 C 0.294 3.706 11 O -0.410 6.410 12 N -0.293 5.293 13 C -0.095 4.095 14 C -0.139 4.139 15 C -0.172 4.172 16 C 0.100 3.900 17 C -0.486 4.486 18 H 0.095 0.905 19 C -0.144 4.144 20 N -0.425 5.425 21 Si 0.735 3.265 22 H -0.193 1.193 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.237 4.237 26 C -0.103 4.103 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.226 0.774 47 H 0.106 0.894 48 H 0.143 0.857 49 H 0.090 0.910 50 H 0.111 0.889 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.097 10.071 -15.483 18.503 hybrid contribution -0.506 -0.766 0.402 1.002 sum 0.592 9.305 -15.081 17.731 Atomic orbital electron populations 1.21925 0.95622 1.01722 1.01515 1.21153 0.95662 0.96098 0.98622 1.21818 1.00927 0.96078 1.01517 1.22052 1.04212 0.92141 0.97540 1.21446 1.01343 0.96882 0.93298 1.21701 0.94960 1.00024 0.97519 1.21227 0.94464 0.96569 0.99929 1.21853 1.00008 0.99164 0.99166 1.22148 0.99535 0.96849 1.02358 1.20437 0.79539 0.81103 0.89534 1.90639 1.41261 1.62443 1.46667 1.43055 1.58253 1.16214 1.11775 1.17248 0.99831 1.05554 0.86917 1.20227 0.96787 0.99724 0.97146 1.20993 0.99441 1.02988 0.93767 1.17680 0.89695 0.89805 0.92855 1.19573 1.28274 1.03478 0.97324 0.90494 1.25917 0.93149 0.96171 0.99147 1.69821 1.29428 1.09966 1.33244 0.86281 0.79801 0.77937 0.82503 1.19334 1.20342 1.18645 1.20704 1.00549 1.05922 0.96475 1.20500 0.95949 0.99142 0.94726 0.93088 0.92525 0.92664 0.91291 0.92741 0.93026 0.92674 0.91334 0.88540 0.89207 0.91738 0.90808 0.90469 0.92993 0.92746 0.92804 0.90976 0.93213 0.92500 0.77387 0.89351 0.85730 0.90992 0.88866 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.98 37.16 0.33 -0.98 16 2 C -0.10 -0.87 2.86 -90.62 -0.26 -1.13 16 3 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 4 C -0.12 -1.40 3.30 -26.73 -0.09 -1.49 16 5 C -0.11 -1.29 2.41 -91.77 -0.22 -1.51 16 6 C -0.10 -1.07 4.63 -26.74 -0.12 -1.19 16 7 C -0.10 -1.23 2.59 -90.62 -0.23 -1.46 16 8 C -0.14 -1.50 9.03 37.16 0.34 -1.17 16 9 C -0.15 -1.72 7.70 37.16 0.29 -1.43 16 10 C 0.51 8.47 4.74 -10.99 -0.05 8.42 16 11 O -0.53 -10.91 12.73 5.55 0.07 -10.83 16 12 N -0.65 -11.40 5.32 -9.74 -0.05 -11.46 16 13 C 0.00 -0.07 6.39 -83.57 -0.53 -0.60 16 14 C -0.12 -2.74 9.88 -39.79 -0.39 -3.13 16 15 C -0.15 -3.95 8.64 -39.26 -0.34 -4.29 16 16 C 0.10 2.78 5.59 -106.80 -0.60 2.18 16 17 C -0.46 -12.28 9.05 -37.85 -0.34 -12.62 16 18 H 0.08 2.00 7.88 -52.48 -0.41 1.59 16 19 C 0.07 1.84 5.21 -17.34 -0.09 1.75 16 20 N -0.80 -20.56 10.76 55.55 0.60 -19.97 16 21 Si 0.91 18.83 29.58 -169.99 -5.03 13.80 16 22 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 C -0.22 -5.58 9.74 -39.26 -0.38 -5.96 16 26 C -0.08 -2.02 8.64 -39.79 -0.34 -2.36 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.48 6.31 -51.93 -0.33 0.16 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.57 6.62 -51.93 -0.34 0.23 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.94 7.78 -51.93 -0.40 0.53 16 35 H 0.10 1.14 3.17 -51.93 -0.16 0.97 16 36 H 0.09 0.95 6.04 -51.93 -0.31 0.64 16 37 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 38 H 0.07 0.64 6.25 -51.93 -0.32 0.31 16 39 H 0.08 1.19 6.43 -51.93 -0.33 0.86 16 40 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 42 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 43 H 0.07 0.96 6.37 -51.93 -0.33 0.63 16 44 H 0.05 0.53 7.85 -51.93 -0.41 0.12 16 45 H 0.06 0.55 6.86 -51.93 -0.36 0.19 16 46 H 0.39 5.61 8.80 -40.82 -0.36 5.25 16 47 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 48 H 0.13 3.32 6.03 -52.49 -0.32 3.00 16 49 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 50 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 51 H 0.11 2.70 5.90 -52.49 -0.31 2.39 16 LS Contribution 388.21 15.07 5.85 5.85 Total: -1.00 -29.09 388.21 -9.75 -38.84 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -8.49 Total: 11.63 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -2.70 Total: -27.87 kcal Atomic # 7 Polarization: -31.97 SS G_CDS: 0.55 Total: -31.42 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.09 -9.75 -38.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355889172.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.980 kcal (2) G-P(sol) polarization free energy of solvation -29.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds