Wall clock time and date at job start Tue Mar 31 2020 12:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46911 * 2 1 4 4 C 1.53001 * 109.46937 * 119.99662 * 2 1 3 5 5 C 1.52998 * 109.47164 * 173.63608 * 4 2 1 6 6 C 1.53001 * 109.47024 * 292.98503 * 5 4 2 7 7 C 1.52995 * 109.47195 * 174.78859 * 6 5 4 8 8 C 1.53005 * 109.47189 * 175.16057 * 7 6 5 9 9 C 1.53001 * 109.47428 * 295.16092 * 7 6 5 10 10 C 1.50697 * 109.47492 * 172.98674 * 5 4 2 11 11 O 1.21289 * 120.00020 * 32.51418 * 10 5 4 12 12 N 1.34776 * 119.99789 * 212.52184 * 10 5 4 13 13 C 1.39945 * 119.99795 * 184.44339 * 12 10 5 14 14 C 1.39288 * 119.94509 * 144.42987 * 13 12 10 15 15 C 1.38494 * 120.42541 * 180.02562 * 14 13 12 16 16 C 1.37678 * 120.32268 * 359.97438 * 15 14 13 17 17 C 1.40747 * 119.88577 * 0.02562 * 16 15 14 18 18 C 1.41404 * 120.20871 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00213 * 208.11362 * 18 17 16 20 20 C 1.39935 * 120.00075 * 28.11573 * 18 17 16 21 21 N 1.30821 * 120.00270 * 11.52001 * 20 18 17 22 22 Si 1.86806 * 119.99907 * 191.51931 * 20 18 17 23 23 H 1.48499 * 109.46787 * 89.99915 * 22 20 18 24 24 H 1.48497 * 109.47359 * 209.99808 * 22 20 18 25 25 H 1.48497 * 109.47298 * 330.00175 * 22 20 18 26 26 C 1.38243 * 119.94546 * 324.16136 * 13 12 10 27 27 H 1.08999 * 109.47310 * 300.00617 * 1 2 3 28 28 H 1.09002 * 109.46883 * 60.00297 * 1 2 3 29 29 H 1.09003 * 109.46882 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47418 * 239.99892 * 2 1 3 31 31 H 1.09005 * 109.46717 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46668 * 299.99473 * 3 2 1 33 33 H 1.08996 * 109.47168 * 59.99739 * 3 2 1 34 34 H 1.08995 * 109.47368 * 53.63514 * 4 2 1 35 35 H 1.09007 * 109.46910 * 293.63003 * 4 2 1 36 36 H 1.09004 * 109.47342 * 52.98362 * 5 4 2 37 37 H 1.08998 * 109.47213 * 294.79050 * 6 5 4 38 38 H 1.09002 * 109.46909 * 54.78805 * 6 5 4 39 39 H 1.09002 * 109.47384 * 55.16412 * 7 6 5 40 40 H 1.09010 * 109.46918 * 59.99986 * 8 7 6 41 41 H 1.08994 * 109.47679 * 179.97438 * 8 7 6 42 42 H 1.08997 * 109.47510 * 300.00326 * 8 7 6 43 43 H 1.09004 * 109.47048 * 305.97475 * 9 7 6 44 44 H 1.08993 * 109.46868 * 65.97340 * 9 7 6 45 45 H 1.08999 * 109.47011 * 185.97647 * 9 7 6 46 46 H 0.96998 * 120.00647 * 4.44331 * 12 10 5 47 47 H 1.07994 * 119.79028 * 359.97438 * 14 13 12 48 48 H 1.08002 * 119.83611 * 180.02562 * 15 14 13 49 49 H 1.07998 * 120.05617 * 180.02562 * 16 15 14 50 50 H 0.97003 * 120.00622 * 179.97438 * 21 20 18 51 51 H 1.07995 * 120.16076 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5616 -0.8612 1.1720 6 6 3.9289 -1.8120 0.0310 7 6 5.4498 -1.8513 -0.1305 8 6 5.8236 -2.8913 -1.1887 9 6 5.9520 -0.4742 -0.5690 10 6 4.0820 -1.4140 2.4737 11 8 3.4069 -2.1903 3.1160 12 7 5.2977 -1.0456 2.9242 13 6 5.8204 -1.6289 4.0840 14 6 7.1874 -1.8774 4.1819 15 6 7.7152 -2.4546 5.3248 16 6 6.8935 -2.7889 6.3777 17 6 5.5102 -2.5437 6.2930 18 6 4.6599 -2.8847 7.3702 19 1 3.6255 -3.1331 7.1839 20 6 5.1587 -2.9004 8.6775 21 7 6.3345 -2.3880 8.9352 22 14 4.1456 -3.6530 10.0548 23 1 4.4723 -5.0964 10.1777 24 1 4.4583 -2.9642 11.3326 25 1 2.7009 -3.4968 9.7489 26 6 4.9798 -1.9523 5.1328 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.5866 -1.7106 1.3082 35 1 1.7727 -0.1456 2.1356 36 1 4.0076 0.1163 0.9882 37 1 3.5618 -2.8125 0.2593 38 1 3.4742 -1.4607 -0.8953 39 1 5.9094 -2.1197 0.8208 40 1 5.3641 -2.6229 -2.1401 41 1 6.9071 -2.9191 -1.3041 42 1 5.4659 -3.8723 -0.8764 43 1 5.4145 -0.1594 -1.4635 44 1 5.7805 0.2465 0.2304 45 1 7.0187 -0.5288 -0.7865 46 1 5.8104 -0.3763 2.4446 47 1 7.8399 -1.6191 3.3610 48 1 8.7767 -2.6427 5.3907 49 1 7.3098 -3.2384 7.2671 50 1 6.6802 -2.3985 9.8415 51 1 3.9205 -1.7556 5.0596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436285768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:32 Heat of formation + Delta-G solvation = -59.368271 kcal Electronic energy + Delta-G solvation = -27321.442425 eV Core-core repulsion = 23797.781398 eV Total energy + Delta-G solvation = -3523.661027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.19606 -37.86536 -36.69134 -35.81889 -34.35111 -32.93571 -31.53463 -29.76635 -28.11802 -27.40327 -27.18547 -26.37104 -25.25688 -23.82053 -21.31403 -20.80888 -20.38877 -19.73675 -19.04537 -17.56576 -16.80864 -15.70404 -15.56935 -15.27427 -14.98009 -14.58854 -14.34157 -14.29530 -14.10289 -13.67682 -13.58699 -13.01010 -12.96156 -12.69838 -12.49992 -12.38281 -12.28368 -12.21344 -11.94056 -11.75474 -11.63405 -11.57837 -11.14394 -11.10695 -11.08373 -10.95820 -10.89230 -10.77159 -10.54601 -10.44036 -10.41700 -10.33726 -10.08080 -9.58678 -9.28671 -9.01051 -8.79373 -7.38300 -6.88052 -6.62474 -4.30878 2.67687 2.88840 3.12303 3.17197 3.23014 3.39160 3.70011 4.01049 4.51901 4.68287 4.70304 4.78040 4.84919 4.87908 4.91810 5.12927 5.28449 5.28735 5.40674 5.46994 5.50329 5.54960 5.65543 5.68188 5.73692 5.75285 5.77861 5.80703 5.85724 5.90014 5.92293 5.98124 6.09577 6.13149 6.22146 6.27970 6.32346 6.34333 6.37490 6.42481 6.83108 7.07443 7.10695 7.13773 7.31555 7.61990 7.78583 8.01485 8.15789 8.23645 8.32322 8.69904 8.81243 8.99852 9.03292 10.29817 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.003433 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.767511 B = 8153.954958 C = 9482.541770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.098 4.098 5 C -0.106 4.106 6 C -0.102 4.102 7 C -0.110 4.110 8 C -0.144 4.144 9 C -0.147 4.147 10 C 0.509 3.491 11 O -0.518 6.518 12 N -0.668 5.668 13 C 0.146 3.854 14 C -0.257 4.257 15 C -0.096 4.096 16 C -0.167 4.167 17 C 0.118 3.882 18 C -0.459 4.459 19 H 0.077 0.923 20 C 0.074 3.926 21 N -0.803 5.803 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.263 1.263 26 C -0.205 4.205 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.395 0.605 47 H 0.088 0.912 48 H 0.091 0.909 49 H 0.120 0.880 50 H 0.278 0.722 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.659 5.504 -18.063 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.208 4.208 4 C -0.136 4.136 5 C -0.128 4.128 6 C -0.140 4.140 7 C -0.128 4.128 8 C -0.201 4.201 9 C -0.205 4.205 10 C 0.296 3.704 11 O -0.393 6.393 12 N -0.311 5.311 13 C 0.055 3.945 14 C -0.279 4.279 15 C -0.115 4.115 16 C -0.187 4.187 17 C 0.115 3.885 18 C -0.489 4.489 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.430 5.430 22 Si 0.735 3.265 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.227 4.227 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.229 0.771 47 H 0.106 0.894 48 H 0.109 0.891 49 H 0.138 0.862 50 H 0.089 0.911 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.025 4.991 -17.425 18.567 hybrid contribution 0.031 0.127 0.492 0.509 sum -3.994 5.118 -16.932 18.134 Atomic orbital electron populations 1.21831 0.95248 1.01798 1.01567 1.21180 0.95698 0.96245 0.98475 1.21920 1.01154 0.96074 1.01627 1.21493 0.92685 1.01684 0.97742 1.21448 0.97672 1.00462 0.93207 1.21651 0.95590 0.99584 0.97141 1.21285 0.95659 0.95722 1.00166 1.21792 1.01184 0.98778 0.98373 1.21898 1.01045 0.96474 1.01052 1.20611 0.81332 0.81723 0.86735 1.90731 1.56321 1.34465 1.57783 1.43592 1.18745 1.42036 1.26767 1.17478 0.92594 0.99186 0.85286 1.20066 0.92795 1.15037 0.99960 1.20475 0.97502 0.99619 0.93874 1.21398 0.94159 1.04848 0.98311 1.17529 0.92340 0.87657 0.91009 1.19582 0.97813 1.40889 0.90657 0.90480 1.25873 0.95089 0.93051 1.00219 1.69800 1.17251 1.33831 1.22082 0.86281 0.80968 0.79795 0.79468 1.19369 1.20376 1.18664 1.21159 0.98934 1.08313 0.94276 0.92652 0.92923 0.92627 0.90928 0.92468 0.92957 0.92622 0.90712 0.91503 0.89219 0.91197 0.90702 0.90279 0.92922 0.92721 0.92680 0.92662 0.92802 0.92604 0.77053 0.89412 0.89131 0.86180 0.91094 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.19 37.16 0.34 -0.92 16 2 C -0.10 -0.89 2.82 -90.62 -0.26 -1.14 16 3 C -0.15 -1.25 8.98 37.16 0.33 -0.92 16 4 C -0.10 -1.17 3.64 -26.73 -0.10 -1.27 16 5 C -0.11 -1.31 1.95 -91.77 -0.18 -1.48 16 6 C -0.10 -1.11 4.04 -26.73 -0.11 -1.22 16 7 C -0.11 -1.17 2.79 -90.62 -0.25 -1.42 16 8 C -0.14 -1.39 9.19 37.16 0.34 -1.05 16 9 C -0.15 -1.28 8.80 37.16 0.33 -0.96 16 10 C 0.51 8.97 5.94 -10.99 -0.07 8.91 16 11 O -0.52 -11.58 13.84 5.55 0.08 -11.50 16 12 N -0.67 -11.91 4.38 -9.91 -0.04 -11.96 16 13 C 0.15 3.33 6.28 -83.76 -0.53 2.81 16 14 C -0.26 -5.70 9.97 -39.10 -0.39 -6.09 16 15 C -0.10 -2.26 10.02 -39.69 -0.40 -2.66 16 16 C -0.17 -4.46 8.66 -38.84 -0.34 -4.80 16 17 C 0.12 3.29 5.55 -106.85 -0.59 2.69 16 18 C -0.46 -12.85 9.06 -37.74 -0.34 -13.20 16 19 H 0.08 2.13 7.87 -52.49 -0.41 1.72 16 20 C 0.07 1.92 5.24 -17.35 -0.09 1.83 16 21 N -0.80 -21.32 10.83 55.55 0.60 -20.72 16 22 Si 0.91 19.53 29.58 -169.99 -5.03 14.50 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 25 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 26 C -0.21 -5.41 8.43 -38.68 -0.33 -5.74 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.61 6.28 -51.93 -0.33 0.28 16 31 H 0.06 0.46 6.47 -51.93 -0.34 0.12 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.99 8.06 -51.93 -0.42 0.57 16 35 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 36 H 0.09 0.93 4.62 -51.93 -0.24 0.69 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 0.67 6.31 -51.93 -0.33 0.34 16 39 H 0.08 1.06 6.52 -51.93 -0.34 0.72 16 40 H 0.05 0.44 8.14 -51.92 -0.42 0.01 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.05 0.45 6.37 -51.93 -0.33 0.12 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.40 5.66 8.43 -40.82 -0.34 5.31 16 47 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 48 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 49 H 0.12 3.29 6.19 -52.49 -0.32 2.97 16 50 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 51 H 0.11 3.01 6.27 -52.49 -0.33 2.68 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -30.43 396.03 -9.82 -40.25 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.78 Total: 10.09 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -2.62 Total: -26.63 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.56 Total: -32.67 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.43 -9.82 -40.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436285768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.117 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds