Wall clock time and date at job start Tue Mar 31 2020 12:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46911 * 2 1 4 4 C 1.53001 * 109.46937 * 119.99662 * 2 1 3 5 5 C 1.52998 * 109.47164 * 173.63608 * 4 2 1 6 6 C 1.53001 * 109.47024 * 292.98503 * 5 4 2 7 7 C 1.52995 * 109.47195 * 174.78859 * 6 5 4 8 8 C 1.53005 * 109.47189 * 175.16057 * 7 6 5 9 9 C 1.53001 * 109.47428 * 295.16092 * 7 6 5 10 10 C 1.50697 * 109.47492 * 172.98674 * 5 4 2 11 11 O 1.21289 * 120.00020 * 32.51418 * 10 5 4 12 12 N 1.34776 * 119.99789 * 212.52184 * 10 5 4 13 13 C 1.39945 * 119.99795 * 184.44339 * 12 10 5 14 14 C 1.39288 * 119.94509 * 144.42987 * 13 12 10 15 15 C 1.38494 * 120.42541 * 180.02562 * 14 13 12 16 16 C 1.37678 * 120.32268 * 359.97438 * 15 14 13 17 17 C 1.40747 * 119.88577 * 0.02562 * 16 15 14 18 18 C 1.41404 * 120.20871 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00213 * 208.11362 * 18 17 16 20 20 C 1.39935 * 120.00075 * 28.11573 * 18 17 16 21 21 N 1.30821 * 120.00270 * 11.52001 * 20 18 17 22 22 Si 1.86806 * 119.99907 * 191.51931 * 20 18 17 23 23 H 1.48499 * 109.46787 * 89.99915 * 22 20 18 24 24 H 1.48497 * 109.47359 * 209.99808 * 22 20 18 25 25 H 1.48497 * 109.47298 * 330.00175 * 22 20 18 26 26 C 1.38243 * 119.94546 * 324.16136 * 13 12 10 27 27 H 1.08999 * 109.47310 * 300.00617 * 1 2 3 28 28 H 1.09002 * 109.46883 * 60.00297 * 1 2 3 29 29 H 1.09003 * 109.46882 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47418 * 239.99892 * 2 1 3 31 31 H 1.09005 * 109.46717 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46668 * 299.99473 * 3 2 1 33 33 H 1.08996 * 109.47168 * 59.99739 * 3 2 1 34 34 H 1.08995 * 109.47368 * 53.63514 * 4 2 1 35 35 H 1.09007 * 109.46910 * 293.63003 * 4 2 1 36 36 H 1.09004 * 109.47342 * 52.98362 * 5 4 2 37 37 H 1.08998 * 109.47213 * 294.79050 * 6 5 4 38 38 H 1.09002 * 109.46909 * 54.78805 * 6 5 4 39 39 H 1.09002 * 109.47384 * 55.16412 * 7 6 5 40 40 H 1.09010 * 109.46918 * 59.99986 * 8 7 6 41 41 H 1.08994 * 109.47679 * 179.97438 * 8 7 6 42 42 H 1.08997 * 109.47510 * 300.00326 * 8 7 6 43 43 H 1.09004 * 109.47048 * 305.97475 * 9 7 6 44 44 H 1.08993 * 109.46868 * 65.97340 * 9 7 6 45 45 H 1.08999 * 109.47011 * 185.97647 * 9 7 6 46 46 H 0.96998 * 120.00647 * 4.44331 * 12 10 5 47 47 H 1.07994 * 119.79028 * 359.97438 * 14 13 12 48 48 H 1.08002 * 119.83611 * 180.02562 * 15 14 13 49 49 H 1.07998 * 120.05617 * 180.02562 * 16 15 14 50 50 H 0.97003 * 120.00622 * 179.97438 * 21 20 18 51 51 H 1.07995 * 120.16076 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5616 -0.8612 1.1720 6 6 3.9289 -1.8120 0.0310 7 6 5.4498 -1.8513 -0.1305 8 6 5.8236 -2.8913 -1.1887 9 6 5.9520 -0.4742 -0.5690 10 6 4.0820 -1.4140 2.4737 11 8 3.4069 -2.1903 3.1160 12 7 5.2977 -1.0456 2.9242 13 6 5.8204 -1.6289 4.0840 14 6 7.1874 -1.8774 4.1819 15 6 7.7152 -2.4546 5.3248 16 6 6.8935 -2.7889 6.3777 17 6 5.5102 -2.5437 6.2930 18 6 4.6599 -2.8847 7.3702 19 1 3.6255 -3.1331 7.1839 20 6 5.1587 -2.9004 8.6775 21 7 6.3345 -2.3880 8.9352 22 14 4.1456 -3.6530 10.0548 23 1 4.4723 -5.0964 10.1777 24 1 4.4583 -2.9642 11.3326 25 1 2.7009 -3.4968 9.7489 26 6 4.9798 -1.9523 5.1328 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.5866 -1.7106 1.3082 35 1 1.7727 -0.1456 2.1356 36 1 4.0076 0.1163 0.9882 37 1 3.5618 -2.8125 0.2593 38 1 3.4742 -1.4607 -0.8953 39 1 5.9094 -2.1197 0.8208 40 1 5.3641 -2.6229 -2.1401 41 1 6.9071 -2.9191 -1.3041 42 1 5.4659 -3.8723 -0.8764 43 1 5.4145 -0.1594 -1.4635 44 1 5.7805 0.2465 0.2304 45 1 7.0187 -0.5288 -0.7865 46 1 5.8104 -0.3763 2.4446 47 1 7.8399 -1.6191 3.3610 48 1 8.7767 -2.6427 5.3907 49 1 7.3098 -3.2384 7.2671 50 1 6.6802 -2.3985 9.8415 51 1 3.9205 -1.7556 5.0596 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436285768.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:31 Heat of formation + Delta-G solvation = -74.377561 kcal Electronic energy + Delta-G solvation = -27322.093277 eV Core-core repulsion = 23797.781398 eV Total energy + Delta-G solvation = -3524.311879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.61860 -39.39761 -38.10546 -36.66239 -36.10892 -34.76931 -32.52200 -31.75024 -29.89500 -28.08572 -27.86436 -27.27859 -27.23132 -25.09838 -22.99063 -22.55737 -21.33863 -21.03292 -20.18527 -19.38114 -18.16783 -17.43543 -16.89030 -16.70153 -16.46102 -16.13195 -15.56295 -15.42248 -15.04337 -14.94509 -14.72275 -14.53571 -14.39469 -14.03499 -13.57448 -13.53043 -13.39742 -13.09193 -13.05795 -12.95184 -12.90790 -12.88258 -12.80947 -12.50555 -12.43291 -12.19351 -11.99135 -11.84619 -11.70341 -11.63433 -11.50261 -11.39626 -11.28547 -11.23069 -11.13603 -10.77952 -10.45573 -9.38217 -8.76836 -8.57662 -6.40254 0.87531 0.99427 1.34271 1.45991 1.48317 1.80138 2.19719 2.26602 2.74338 3.55936 3.65232 3.75052 3.85779 4.06238 4.11764 4.14467 4.20446 4.35833 4.44123 4.46945 4.57430 4.61442 4.69575 4.80709 4.83623 4.89590 4.91730 4.93464 5.04132 5.05777 5.07667 5.08557 5.10801 5.12005 5.13943 5.16306 5.20530 5.26032 5.32015 5.34273 5.37366 5.47732 5.51542 5.54930 5.58852 5.76594 5.86462 6.06175 6.11691 6.34516 6.65126 6.69105 6.93243 7.00043 7.35970 8.35334 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.003433 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.767511 B = 8153.954958 C = 9482.541770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 C -0.151 4.151 4 C -0.097 4.097 5 C -0.091 4.091 6 C -0.097 4.097 7 C -0.110 4.110 8 C -0.143 4.143 9 C -0.146 4.146 10 C 0.505 3.495 11 O -0.571 6.571 12 N -0.656 5.656 13 C 0.154 3.846 14 C -0.245 4.245 15 C -0.094 4.094 16 C -0.193 4.193 17 C 0.087 3.913 18 C -0.505 4.505 19 H 0.060 0.940 20 C 0.036 3.964 21 N -0.829 5.829 22 Si 0.983 3.017 23 H -0.259 1.259 24 H -0.261 1.261 25 H -0.266 1.266 26 C -0.234 4.234 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.119 0.881 37 H 0.046 0.954 38 H 0.107 0.893 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.074 0.926 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.417 0.583 47 H 0.131 0.869 48 H 0.123 0.877 49 H 0.105 0.895 50 H 0.288 0.712 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.684 6.936 -20.711 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.208 4.208 4 C -0.135 4.135 5 C -0.112 4.112 6 C -0.134 4.134 7 C -0.129 4.129 8 C -0.200 4.200 9 C -0.203 4.203 10 C 0.294 3.706 11 O -0.449 6.449 12 N -0.302 5.302 13 C 0.061 3.939 14 C -0.266 4.266 15 C -0.112 4.112 16 C -0.213 4.213 17 C 0.085 3.915 18 C -0.535 4.535 19 H 0.078 0.922 20 C -0.178 4.178 21 N -0.455 5.455 22 Si 0.803 3.197 23 H -0.184 1.184 24 H -0.185 1.185 25 H -0.191 1.191 26 C -0.256 4.256 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.064 0.936 38 H 0.125 0.875 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.255 0.745 47 H 0.149 0.851 48 H 0.141 0.859 49 H 0.123 0.877 50 H 0.099 0.901 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.021 6.461 -20.118 21.345 hybrid contribution -0.240 -0.293 1.184 1.243 sum -3.261 6.168 -18.934 20.178 Atomic orbital electron populations 1.21849 0.95032 1.01676 1.02046 1.21146 0.95897 0.96707 0.97029 1.21934 1.01660 0.95156 1.02058 1.21489 0.92466 1.00716 0.98832 1.21482 0.97662 1.01784 0.90276 1.21668 0.96306 0.97972 0.97489 1.21265 0.94909 0.97549 0.99149 1.21784 1.01622 0.97738 0.98878 1.21900 1.01617 0.94810 1.01970 1.21701 0.80393 0.80581 0.87887 1.90720 1.57636 1.36896 1.59691 1.43531 1.19185 1.42160 1.25281 1.17571 0.92794 0.97802 0.85768 1.20491 0.92791 1.12852 1.00444 1.20853 0.98850 0.98322 0.93209 1.21352 0.94037 1.06718 0.99219 1.17853 0.93371 0.88537 0.91756 1.19733 0.97446 1.43867 0.92459 0.92205 1.26669 0.96350 0.92802 1.01935 1.69835 1.18436 1.34003 1.23245 0.85205 0.78779 0.79223 0.76450 1.18399 1.18481 1.19065 1.21110 0.98352 1.10381 0.95742 0.93532 0.91082 0.93129 0.89280 0.91642 0.91234 0.93577 0.92829 0.93540 0.86295 0.93553 0.87508 0.93290 0.90971 0.92273 0.94170 0.90724 0.92422 0.92095 0.74545 0.85103 0.85891 0.87664 0.90127 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.19 71.98 0.66 -1.68 16 2 C -0.09 -1.42 2.82 -10.79 -0.03 -1.45 16 3 C -0.15 -2.04 8.98 71.98 0.65 -1.39 16 4 C -0.10 -2.30 3.64 30.59 0.11 -2.19 16 5 C -0.09 -2.12 1.95 -11.54 -0.02 -2.14 16 6 C -0.10 -1.92 4.04 30.59 0.12 -1.80 16 7 C -0.11 -2.08 2.79 -10.79 -0.03 -2.11 16 8 C -0.14 -2.43 9.19 71.98 0.66 -1.77 16 9 C -0.15 -1.94 8.80 71.98 0.63 -1.30 16 10 C 0.50 18.09 5.94 87.66 0.52 18.61 16 11 O -0.57 -27.13 13.84 -3.06 -0.04 -27.17 16 12 N -0.66 -23.06 4.38 -303.65 -1.33 -24.39 16 13 C 0.15 7.07 6.28 38.10 0.24 7.31 16 14 C -0.24 -10.43 9.97 22.58 0.23 -10.21 16 15 C -0.09 -4.35 10.02 22.20 0.22 -4.13 16 16 C -0.19 -10.66 8.66 22.75 0.20 -10.46 16 17 C 0.09 5.18 5.55 -21.31 -0.12 5.06 16 18 C -0.50 -30.20 9.06 23.46 0.21 -29.99 16 19 H 0.06 3.61 7.87 -2.91 -0.02 3.59 16 20 C 0.04 1.96 5.24 85.25 0.45 2.40 16 21 N -0.83 -45.30 10.83 21.82 0.24 -45.07 16 22 Si 0.98 41.27 29.58 68.60 2.03 43.30 16 23 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 24 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 C -0.23 -13.05 8.43 22.85 0.19 -12.85 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.09 1.16 6.28 -2.39 -0.02 1.14 16 31 H 0.06 0.77 6.47 -2.38 -0.02 0.76 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 1.49 8.06 -2.39 -0.02 1.47 16 35 H 0.05 1.28 8.13 -2.38 -0.02 1.26 16 36 H 0.12 2.10 4.62 -2.38 -0.01 2.09 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.48 6.31 -2.39 -0.02 1.47 16 39 H 0.05 1.22 6.52 -2.39 -0.02 1.21 16 40 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.06 0.72 6.37 -2.39 -0.02 0.70 16 45 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.42 10.96 8.43 -92.71 -0.78 10.18 16 47 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 48 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 49 H 0.11 6.02 6.19 -2.91 -0.02 6.00 16 50 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 51 H 0.09 5.11 6.27 -2.91 -0.02 5.09 16 Total: -1.00 -72.32 396.03 5.91 -66.41 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.12 Total: 37.01 kcal Atomic # 6 Polarization: -54.98 SS G_CDS: 4.89 Total: -50.09 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -1.09 Total: -69.46 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.17 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Total: -72.32 5.91 -66.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436285768.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.969 kcal (2) G-P(sol) polarization free energy of solvation -72.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds