Wall clock time and date at job start Tue Mar 31 2020 12:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 C 1.53001 * 109.47306 * 239.99629 * 2 1 3 5 5 C 1.53005 * 109.47128 * 120.00086 * 2 1 3 6 6 C 1.53008 * 109.46903 * 299.99983 * 5 2 1 7 7 C 1.52999 * 109.47128 * 179.97438 * 5 2 1 8 8 C 1.52992 * 109.47125 * 59.99718 * 5 2 1 9 9 N 1.46503 * 109.47289 * 180.02562 * 8 5 2 10 10 C 1.34769 * 120.00380 * 180.02562 * 9 8 5 11 11 O 1.21283 * 120.00035 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00455 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.47069 * 300.00306 * 12 10 9 14 14 C 1.50702 * 109.47018 * 59.99464 * 12 10 9 15 15 H 1.07997 * 120.00304 * 235.33770 * 14 12 10 16 16 C 1.37879 * 119.99933 * 55.33892 * 14 12 10 17 17 N 1.31516 * 119.99735 * 1.96772 * 16 14 12 18 18 Si 1.86800 * 120.00111 * 181.96427 * 16 14 12 19 19 H 1.48498 * 109.46846 * 90.00198 * 18 16 14 20 20 H 1.48499 * 109.46961 * 209.99878 * 18 16 14 21 21 H 1.48494 * 109.47187 * 329.99881 * 18 16 14 22 22 C 1.50700 * 109.47580 * 179.97438 * 12 10 9 23 23 C 1.38238 * 119.99685 * 47.22350 * 22 12 10 24 24 C 1.38240 * 119.99512 * 180.02562 * 23 22 12 25 25 C 1.38236 * 120.00137 * 359.95537 * 24 23 22 26 26 C 1.38228 * 120.00048 * 359.97438 * 25 24 23 27 27 C 1.38232 * 120.00167 * 227.20237 * 22 12 10 28 28 H 1.08997 * 109.47064 * 299.99945 * 1 2 3 29 29 H 1.09003 * 109.46965 * 59.99959 * 1 2 3 30 30 H 1.09002 * 109.46769 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46921 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47188 * 299.99905 * 3 2 1 33 33 H 1.08997 * 109.47060 * 60.00053 * 3 2 1 34 34 H 1.08993 * 109.47506 * 300.00146 * 4 2 1 35 35 H 1.09003 * 109.46772 * 60.00294 * 4 2 1 36 36 H 1.09001 * 109.47225 * 179.97438 * 4 2 1 37 37 H 1.08994 * 109.46769 * 179.97438 * 6 5 2 38 38 H 1.08998 * 109.46672 * 299.99910 * 6 5 2 39 39 H 1.09001 * 109.47053 * 59.99612 * 6 5 2 40 40 H 1.08997 * 109.47064 * 299.99969 * 7 5 2 41 41 H 1.09006 * 109.47260 * 60.00122 * 7 5 2 42 42 H 1.08999 * 109.47014 * 179.97438 * 7 5 2 43 43 H 1.09006 * 109.47090 * 60.00693 * 8 5 2 44 44 H 1.09001 * 109.47655 * 300.00059 * 8 5 2 45 45 H 0.96999 * 119.99668 * 359.97438 * 9 8 5 46 46 H 0.97003 * 120.00319 * 179.97438 * 17 16 14 47 47 H 1.08000 * 120.00284 * 359.97438 * 23 22 12 48 48 H 1.08001 * 119.99592 * 179.97438 * 24 23 22 49 49 H 1.08000 * 119.99403 * 179.72391 * 25 24 23 50 50 H 1.07996 * 120.00078 * 179.97438 * 26 25 24 51 51 H 1.08001 * 120.00068 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 0.0000 2.4986 7 6 3.5700 -0.7218 1.2489 8 6 1.5300 -2.1637 1.2493 9 7 2.0178 -2.8542 2.4458 10 6 1.6925 -4.1446 2.6589 11 8 0.9956 -4.7341 1.8604 12 6 2.1938 -4.8547 3.8899 13 1 3.2838 -4.8542 3.8911 14 6 1.6900 -4.1443 5.1198 15 1 2.3880 -3.7999 5.8685 16 6 0.3379 -3.9340 5.2892 17 7 -0.5149 -4.3874 4.3966 18 14 -0.2825 -3.0052 6.7865 19 1 -0.3481 -1.5544 6.4768 20 1 -1.6368 -3.4961 7.1472 21 1 0.6441 -3.2270 7.9255 22 6 1.6916 -6.2755 3.8899 23 6 1.7964 -7.0456 2.7467 24 6 1.3352 -8.3488 2.7466 25 6 0.7700 -8.8821 3.8899 26 6 0.6666 -8.1125 5.0334 27 6 1.1265 -6.8089 5.0332 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 1.8929 -0.5141 3.3885 38 1 1.8933 1.0276 2.4985 39 1 0.4400 0.0001 2.4985 40 1 3.9329 -1.2359 0.3590 41 1 3.9338 0.3057 1.2488 42 1 3.9333 -1.2353 2.1391 43 1 1.8934 -2.6776 0.3593 44 1 0.4400 -2.1638 1.2493 45 1 2.5755 -2.3828 3.0842 46 1 -1.4662 -4.2398 4.5159 47 1 2.2378 -6.6289 1.8534 48 1 1.4167 -8.9503 1.8533 49 1 0.4057 -9.8988 3.8883 50 1 0.2247 -8.5290 5.9265 51 1 1.0453 -6.2074 5.9265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460390793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:44 Heat of formation + Delta-G solvation = -32.589391 kcal Electronic energy + Delta-G solvation = -28442.280263 eV Core-core repulsion = 24919.780456 eV Total energy + Delta-G solvation = -3522.499808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.78708 -38.62901 -37.15178 -33.77655 -33.54334 -31.06180 -30.75522 -29.62563 -28.48087 -28.14787 -27.13502 -25.74265 -25.09734 -23.70165 -21.64716 -21.20018 -20.30511 -19.15915 -17.41913 -16.69950 -15.88893 -15.53981 -15.11851 -14.98211 -14.48468 -14.42194 -14.17958 -13.96928 -13.84526 -13.55940 -13.33937 -12.95015 -12.44039 -12.32604 -12.19015 -12.05151 -12.01071 -11.88246 -11.79688 -11.78952 -11.58100 -11.27355 -11.16806 -11.12759 -10.97086 -10.90762 -10.72512 -10.39459 -10.10154 -10.09072 -10.00601 -9.98416 -9.61627 -9.32178 -8.67543 -8.22068 -7.82423 -7.64010 -7.34536 -6.09625 -4.25803 2.59635 2.66058 3.20487 3.30503 3.30792 4.20880 4.31022 4.48591 4.77166 4.82957 4.88707 5.08909 5.18360 5.26024 5.30934 5.40608 5.56050 5.66313 5.73303 5.78413 5.86776 5.89467 5.94600 6.00551 6.01864 6.03453 6.07312 6.09561 6.11064 6.13288 6.24191 6.27358 6.30286 6.35931 6.45423 6.54167 6.60088 6.70179 6.71973 6.73556 6.87241 6.97211 7.18436 7.26443 7.58976 7.66507 7.70669 7.72436 7.84973 8.21540 8.32437 8.68163 8.89749 9.40422 9.80771 10.90572 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.004581 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.605843 B = 6110.759398 C = 7312.800626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.147 4.147 5 C -0.063 4.063 6 C -0.145 4.145 7 C -0.144 4.144 8 C 0.136 3.864 9 N -0.733 5.733 10 C 0.550 3.450 11 O -0.550 6.550 12 C 0.055 3.945 13 H 0.054 0.946 14 C -0.540 4.540 15 H 0.065 0.935 16 C 0.076 3.924 17 N -0.840 5.840 18 Si 0.883 3.117 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.012 4.012 23 C -0.100 4.100 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.148 4.148 27 C -0.065 4.065 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.393 0.607 46 H 0.264 0.736 47 H 0.106 0.894 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.101 0.899 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 7.486 -6.005 11.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.054 4.054 3 C -0.200 4.200 4 C -0.204 4.204 5 C -0.063 4.063 6 C -0.202 4.202 7 C -0.201 4.201 8 C 0.012 3.988 9 N -0.387 5.387 10 C 0.339 3.661 11 O -0.427 6.427 12 C 0.034 3.966 13 H 0.072 0.928 14 C -0.577 4.577 15 H 0.083 0.917 16 C -0.132 4.132 17 N -0.472 5.472 18 Si 0.711 3.289 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.013 4.013 23 C -0.118 4.118 24 C -0.163 4.163 25 C -0.164 4.164 26 C -0.167 4.167 27 C -0.083 4.083 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.228 0.772 46 H 0.074 0.926 47 H 0.125 0.875 48 H 0.118 0.882 49 H 0.117 0.883 50 H 0.119 0.881 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.989 7.025 -6.651 10.884 hybrid contribution -0.633 0.818 1.068 1.486 sum 4.356 7.843 -5.583 10.566 Atomic orbital electron populations 1.22012 0.94713 1.02452 1.01345 1.20431 0.95514 0.95019 0.94450 1.21967 1.01011 0.95568 1.01428 1.22007 1.01062 1.00768 0.96574 1.20723 0.95625 0.94990 0.94990 1.21969 1.01507 0.99519 0.97217 1.21971 0.94650 1.01375 1.02115 1.21210 0.98853 0.89982 0.88765 1.45842 1.55431 1.12969 1.24442 1.20935 0.78448 0.80774 0.85983 1.90529 1.37672 1.66646 1.47869 1.17886 0.95469 0.89920 0.93312 0.92769 1.20674 0.92166 1.40018 1.04891 0.91657 1.25031 0.97087 0.94957 0.96143 1.70080 1.02516 1.41371 1.33241 0.86720 0.78491 0.80287 0.83435 1.20550 1.21198 1.19659 1.19820 0.94806 0.94577 0.92131 1.20972 1.00084 0.93120 0.97633 1.20817 1.02173 0.96066 0.97251 1.20759 1.02631 0.98837 0.94148 1.20982 1.02709 0.95518 0.97458 1.21144 0.94730 0.93002 0.99448 0.92351 0.93169 0.91954 0.92478 0.93148 0.92417 0.92049 0.93127 0.92438 0.91941 0.92842 0.92363 0.92456 0.92653 0.92344 0.92840 0.92344 0.77216 0.92604 0.87546 0.88177 0.88280 0.88113 0.85484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 7.77 37.16 0.29 -1.52 16 2 C -0.05 -0.62 0.35 -154.51 -0.05 -0.67 16 3 C -0.14 -1.41 7.77 37.16 0.29 -1.12 16 4 C -0.15 -1.63 7.77 37.16 0.29 -1.34 16 5 C -0.06 -0.82 0.11 -154.51 -0.02 -0.84 16 6 C -0.14 -1.98 7.60 37.16 0.28 -1.69 16 7 C -0.14 -1.69 7.60 37.16 0.28 -1.41 16 8 C 0.14 2.34 3.86 -4.04 -0.02 2.32 16 9 N -0.73 -14.29 4.86 -60.30 -0.29 -14.58 16 10 C 0.55 12.94 5.45 -10.99 -0.06 12.88 16 11 O -0.55 -14.71 13.95 5.55 0.08 -14.63 16 12 C 0.06 1.30 2.78 -94.08 -0.26 1.04 16 13 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 14 C -0.54 -13.09 7.12 -34.44 -0.25 -13.34 16 15 H 0.07 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.08 1.91 3.99 -17.82 -0.07 1.84 16 17 N -0.84 -22.89 10.88 55.43 0.60 -22.29 16 18 Si 0.88 19.80 29.54 -169.99 -5.02 14.78 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 C -0.01 -0.30 4.52 -104.62 -0.47 -0.77 16 23 C -0.10 -2.30 8.21 -39.58 -0.33 -2.62 16 24 C -0.14 -3.03 10.05 -39.58 -0.40 -3.42 16 25 C -0.15 -2.93 10.05 -39.59 -0.40 -3.33 16 26 C -0.15 -3.16 10.05 -39.59 -0.40 -3.55 16 27 C -0.07 -1.54 8.20 -39.58 -0.32 -1.87 16 28 H 0.06 0.72 6.43 -51.93 -0.33 0.38 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.87 6.43 -51.93 -0.33 0.53 16 31 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 34 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 37 H 0.06 0.94 6.86 -51.93 -0.36 0.58 16 38 H 0.05 0.62 6.43 -51.93 -0.33 0.29 16 39 H 0.06 0.86 6.43 -51.93 -0.33 0.52 16 40 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 41 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 42 H 0.06 0.72 6.86 -51.93 -0.36 0.36 16 43 H 0.05 0.94 6.43 -51.93 -0.33 0.60 16 44 H 0.06 1.15 6.43 -51.93 -0.33 0.82 16 45 H 0.39 7.08 6.05 -40.82 -0.25 6.83 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 47 H 0.11 2.43 7.01 -52.49 -0.37 2.06 16 48 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 49 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 50 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 51 H 0.13 3.09 6.02 -52.49 -0.32 2.78 16 LS Contribution 376.59 15.07 5.68 5.68 Total: -1.00 -28.89 376.59 -8.72 -37.61 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -8.15 Total: 12.86 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -1.61 Total: -19.43 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.31 Total: -36.87 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.08 Total: -14.63 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.89 -8.72 -37.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460390793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.021 kcal (2) G-P(sol) polarization free energy of solvation -28.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds