Wall clock time and date at job start Tue Mar 31 2020 12:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 C 1.53001 * 109.47306 * 239.99629 * 2 1 3 5 5 C 1.53005 * 109.47128 * 120.00086 * 2 1 3 6 6 C 1.53008 * 109.46903 * 299.99983 * 5 2 1 7 7 C 1.52999 * 109.47128 * 179.97438 * 5 2 1 8 8 C 1.52992 * 109.47125 * 59.99718 * 5 2 1 9 9 N 1.46503 * 109.47289 * 180.02562 * 8 5 2 10 10 C 1.34769 * 120.00380 * 180.02562 * 9 8 5 11 11 O 1.21283 * 120.00035 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00455 * 180.02562 * 10 9 8 13 13 H 1.09000 * 109.47069 * 300.00306 * 12 10 9 14 14 C 1.50702 * 109.47018 * 59.99464 * 12 10 9 15 15 H 1.07997 * 120.00304 * 235.33770 * 14 12 10 16 16 C 1.37879 * 119.99933 * 55.33892 * 14 12 10 17 17 N 1.31516 * 119.99735 * 1.96772 * 16 14 12 18 18 Si 1.86800 * 120.00111 * 181.96427 * 16 14 12 19 19 H 1.48498 * 109.46846 * 90.00198 * 18 16 14 20 20 H 1.48499 * 109.46961 * 209.99878 * 18 16 14 21 21 H 1.48494 * 109.47187 * 329.99881 * 18 16 14 22 22 C 1.50700 * 109.47580 * 179.97438 * 12 10 9 23 23 C 1.38238 * 119.99685 * 47.22350 * 22 12 10 24 24 C 1.38240 * 119.99512 * 180.02562 * 23 22 12 25 25 C 1.38236 * 120.00137 * 359.95537 * 24 23 22 26 26 C 1.38228 * 120.00048 * 359.97438 * 25 24 23 27 27 C 1.38232 * 120.00167 * 227.20237 * 22 12 10 28 28 H 1.08997 * 109.47064 * 299.99945 * 1 2 3 29 29 H 1.09003 * 109.46965 * 59.99959 * 1 2 3 30 30 H 1.09002 * 109.46769 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46921 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47188 * 299.99905 * 3 2 1 33 33 H 1.08997 * 109.47060 * 60.00053 * 3 2 1 34 34 H 1.08993 * 109.47506 * 300.00146 * 4 2 1 35 35 H 1.09003 * 109.46772 * 60.00294 * 4 2 1 36 36 H 1.09001 * 109.47225 * 179.97438 * 4 2 1 37 37 H 1.08994 * 109.46769 * 179.97438 * 6 5 2 38 38 H 1.08998 * 109.46672 * 299.99910 * 6 5 2 39 39 H 1.09001 * 109.47053 * 59.99612 * 6 5 2 40 40 H 1.08997 * 109.47064 * 299.99969 * 7 5 2 41 41 H 1.09006 * 109.47260 * 60.00122 * 7 5 2 42 42 H 1.08999 * 109.47014 * 179.97438 * 7 5 2 43 43 H 1.09006 * 109.47090 * 60.00693 * 8 5 2 44 44 H 1.09001 * 109.47655 * 300.00059 * 8 5 2 45 45 H 0.96999 * 119.99668 * 359.97438 * 9 8 5 46 46 H 0.97003 * 120.00319 * 179.97438 * 17 16 14 47 47 H 1.08000 * 120.00284 * 359.97438 * 23 22 12 48 48 H 1.08001 * 119.99592 * 179.97438 * 24 23 22 49 49 H 1.08000 * 119.99403 * 179.72391 * 25 24 23 50 50 H 1.07996 * 120.00078 * 179.97438 * 26 25 24 51 51 H 1.08001 * 120.00068 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 0.0000 2.4986 7 6 3.5700 -0.7218 1.2489 8 6 1.5300 -2.1637 1.2493 9 7 2.0178 -2.8542 2.4458 10 6 1.6925 -4.1446 2.6589 11 8 0.9956 -4.7341 1.8604 12 6 2.1938 -4.8547 3.8899 13 1 3.2838 -4.8542 3.8911 14 6 1.6900 -4.1443 5.1198 15 1 2.3880 -3.7999 5.8685 16 6 0.3379 -3.9340 5.2892 17 7 -0.5149 -4.3874 4.3966 18 14 -0.2825 -3.0052 6.7865 19 1 -0.3481 -1.5544 6.4768 20 1 -1.6368 -3.4961 7.1472 21 1 0.6441 -3.2270 7.9255 22 6 1.6916 -6.2755 3.8899 23 6 1.7964 -7.0456 2.7467 24 6 1.3352 -8.3488 2.7466 25 6 0.7700 -8.8821 3.8899 26 6 0.6666 -8.1125 5.0334 27 6 1.1265 -6.8089 5.0332 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6767 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 1.8929 -0.5141 3.3885 38 1 1.8933 1.0276 2.4985 39 1 0.4400 0.0001 2.4985 40 1 3.9329 -1.2359 0.3590 41 1 3.9338 0.3057 1.2488 42 1 3.9333 -1.2353 2.1391 43 1 1.8934 -2.6776 0.3593 44 1 0.4400 -2.1638 1.2493 45 1 2.5755 -2.3828 3.0842 46 1 -1.4662 -4.2398 4.5159 47 1 2.2378 -6.6289 1.8534 48 1 1.4167 -8.9503 1.8533 49 1 0.4057 -9.8988 3.8883 50 1 0.2247 -8.5290 5.9265 51 1 1.0453 -6.2074 5.9265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460390793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:43 Heat of formation + Delta-G solvation = -46.846298 kcal Electronic energy + Delta-G solvation = -28442.898489 eV Core-core repulsion = 24919.780456 eV Total energy + Delta-G solvation = -3523.118033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.10429 -40.21585 -38.84385 -35.45599 -35.22481 -32.65177 -32.27593 -31.34171 -29.49212 -29.47800 -28.55285 -26.73922 -26.50112 -25.45477 -23.00705 -22.80373 -21.88411 -20.92391 -18.88007 -18.23017 -17.42240 -17.08642 -16.80708 -16.64049 -15.97933 -15.84570 -15.52107 -15.29703 -15.12269 -14.91492 -14.80307 -14.43975 -14.01163 -13.91973 -13.86316 -13.58134 -13.15845 -13.10938 -13.00143 -12.94525 -12.75553 -12.66968 -12.58572 -12.54743 -12.33703 -12.22928 -12.15941 -11.92505 -11.76179 -11.41026 -11.18823 -11.12071 -11.09751 -11.04959 -10.63115 -10.10757 -9.52992 -9.36888 -9.08525 -8.05341 -6.25062 0.88801 0.94141 1.40012 1.44816 1.51782 2.35856 2.48895 2.86836 3.21984 3.37266 3.72745 3.81542 3.82693 4.23444 4.26917 4.34629 4.36054 4.36273 4.50853 4.55814 4.64533 4.73859 4.77718 4.79250 4.83732 4.87137 4.89574 5.01274 5.04469 5.05101 5.07198 5.07404 5.14120 5.15296 5.16001 5.18311 5.25685 5.28943 5.29952 5.46754 5.51924 5.55968 5.66197 5.67612 5.71452 5.89600 5.94543 5.99373 6.07205 6.44286 6.54068 6.77968 7.15804 7.43612 8.00064 8.93317 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.004581 C = 0.003828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.605843 B = 6110.759398 C = 7312.800626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C -0.138 4.138 4 C -0.145 4.145 5 C -0.054 4.054 6 C -0.143 4.143 7 C -0.142 4.142 8 C 0.142 3.858 9 N -0.722 5.722 10 C 0.547 3.453 11 O -0.588 6.588 12 C 0.046 3.954 13 H 0.065 0.935 14 C -0.532 4.532 15 H 0.071 0.929 16 C 0.042 3.958 17 N -0.872 5.872 18 Si 0.937 3.063 19 H -0.277 1.277 20 H -0.296 1.296 21 H -0.261 1.261 22 C -0.034 4.034 23 C -0.118 4.118 24 C -0.147 4.147 25 C -0.142 4.142 26 C -0.152 4.152 27 C -0.088 4.088 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.048 0.952 44 H 0.027 0.973 45 H 0.401 0.599 46 H 0.254 0.746 47 H 0.098 0.902 48 H 0.129 0.871 49 H 0.138 0.862 50 H 0.126 0.874 51 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.750 8.402 -6.053 12.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.054 4.054 6 C -0.200 4.200 7 C -0.199 4.199 8 C 0.018 3.982 9 N -0.374 5.374 10 C 0.336 3.664 11 O -0.468 6.468 12 C 0.025 3.975 13 H 0.083 0.917 14 C -0.570 4.570 15 H 0.089 0.911 16 C -0.163 4.163 17 N -0.506 5.506 18 Si 0.763 3.237 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.185 1.185 22 C -0.035 4.035 23 C -0.137 4.137 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.170 4.170 27 C -0.106 4.106 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.045 0.955 45 H 0.237 0.763 46 H 0.063 0.937 47 H 0.116 0.884 48 H 0.147 0.853 49 H 0.156 0.844 50 H 0.144 0.856 51 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.053 7.978 -6.679 12.037 hybrid contribution -0.933 0.477 1.059 1.490 sum 5.120 8.455 -5.620 11.370 Atomic orbital electron populations 1.22003 0.95585 1.00855 1.02013 1.20435 0.94802 0.96359 0.93573 1.21931 1.01716 0.93667 1.02191 1.21991 1.01725 0.99550 0.96973 1.20678 0.96792 0.92031 0.95921 1.21954 1.00468 1.00976 0.96592 1.21962 0.93007 1.02935 1.01949 1.21252 0.96965 0.92610 0.87411 1.45753 1.54601 1.11954 1.25142 1.20979 0.78001 0.81782 0.85614 1.90494 1.39487 1.67764 1.49096 1.18009 0.96142 0.90239 0.93155 0.91675 1.20864 0.92160 1.39008 1.04992 0.91108 1.25548 0.97237 0.95533 0.97961 1.70253 1.02009 1.43302 1.35075 0.85873 0.77509 0.79126 0.81168 1.20296 1.22252 1.18516 1.19935 0.95823 0.94855 0.92863 1.21033 1.01207 0.94343 0.97078 1.21190 1.01083 0.95421 0.98795 1.21169 1.01323 1.00381 0.93105 1.21313 1.01938 0.94726 0.99053 1.21132 0.96286 0.94272 0.98870 0.92666 0.91485 0.94691 0.91285 0.91898 0.92236 0.94271 0.91646 0.91327 0.93589 0.90093 0.94011 0.92117 0.90179 0.93098 0.93399 0.95514 0.76286 0.93704 0.88420 0.85323 0.84427 0.85584 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 7.77 71.98 0.56 -3.02 16 2 C -0.05 -1.11 0.35 -52.18 -0.02 -1.13 16 3 C -0.14 -2.28 7.77 71.98 0.56 -1.72 16 4 C -0.15 -3.04 7.77 71.98 0.56 -2.48 16 5 C -0.05 -1.38 0.11 -52.18 -0.01 -1.38 16 6 C -0.14 -3.79 7.60 71.98 0.55 -3.25 16 7 C -0.14 -3.06 7.60 71.98 0.55 -2.51 16 8 C 0.14 5.05 3.86 86.38 0.33 5.38 16 9 N -0.72 -29.03 4.86 -463.07 -2.25 -31.28 16 10 C 0.55 26.69 5.45 87.66 0.48 27.16 16 11 O -0.59 -32.87 13.95 -3.04 -0.04 -32.91 16 12 C 0.05 2.21 2.78 -13.03 -0.04 2.17 16 13 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 14 C -0.53 -26.15 7.12 25.60 0.18 -25.97 16 15 H 0.07 3.33 7.81 -2.91 -0.02 3.31 16 16 C 0.04 2.13 3.99 84.65 0.34 2.46 16 17 N -0.87 -49.02 10.88 21.45 0.23 -48.79 16 18 Si 0.94 41.05 29.54 68.60 2.03 43.07 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 21 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 22 C -0.03 -1.66 4.52 -19.87 -0.09 -1.75 16 23 C -0.12 -5.53 8.21 22.27 0.18 -5.35 16 24 C -0.15 -5.96 10.05 22.27 0.22 -5.74 16 25 C -0.14 -5.41 10.05 22.27 0.22 -5.19 16 26 C -0.15 -6.30 10.05 22.27 0.22 -6.08 16 27 C -0.09 -4.18 8.20 22.27 0.18 -4.00 16 28 H 0.05 1.35 6.43 -2.39 -0.02 1.34 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.03 1.02 6.43 -2.39 -0.02 1.01 16 31 H 0.07 1.00 6.43 -2.39 -0.02 0.98 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.98 6.43 -2.39 -0.02 0.96 16 34 H 0.04 0.98 6.43 -2.39 -0.02 0.97 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.28 6.43 -2.39 -0.02 1.26 16 37 H 0.05 1.36 6.86 -2.39 -0.02 1.34 16 38 H 0.08 1.70 6.43 -2.39 -0.02 1.68 16 39 H 0.04 1.23 6.43 -2.39 -0.02 1.22 16 40 H 0.06 1.28 6.43 -2.39 -0.02 1.27 16 41 H 0.08 1.37 6.43 -2.38 -0.02 1.35 16 42 H 0.05 1.18 6.86 -2.39 -0.02 1.16 16 43 H 0.05 1.76 6.43 -2.38 -0.02 1.74 16 44 H 0.03 1.13 6.43 -2.39 -0.02 1.11 16 45 H 0.40 14.68 6.05 -92.71 -0.56 14.12 16 46 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 47 H 0.10 4.62 7.01 -2.91 -0.02 4.60 16 48 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 49 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 50 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 51 H 0.11 5.56 6.02 -2.91 -0.02 5.54 16 Total: -1.00 -64.06 376.59 5.32 -58.74 By element: Atomic # 1 Polarization: 43.19 SS G_CDS: 0.36 Total: 43.55 kcal Atomic # 6 Polarization: -37.37 SS G_CDS: 4.99 Total: -32.38 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -2.02 Total: -80.07 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.04 Total: -32.91 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -64.06 5.32 -58.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460390793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.896 kcal (2) G-P(sol) polarization free energy of solvation -64.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds