Wall clock time and date at job start Tue Mar 31 2020 12:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47032 * 2 1 4 4 C 1.53001 * 109.47516 * 240.00376 * 2 1 3 5 5 C 1.53002 * 109.47231 * 119.99902 * 2 1 3 6 6 C 1.52999 * 109.46932 * 300.00455 * 5 2 1 7 7 C 1.53000 * 109.47231 * 180.02562 * 5 2 1 8 8 C 1.53001 * 109.47033 * 60.00099 * 5 2 1 9 9 N 1.46492 * 109.47371 * 180.02562 * 8 5 2 10 10 C 1.34773 * 120.00500 * 179.97438 * 9 8 5 11 11 O 1.21288 * 119.99526 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.00311 * 179.97438 * 10 9 8 13 13 H 1.09001 * 109.47069 * 60.00192 * 12 10 9 14 14 C 1.50694 * 109.47553 * 300.00270 * 12 10 9 15 15 H 1.08005 * 119.99844 * 325.10155 * 14 12 10 16 16 C 1.37873 * 120.00327 * 144.82335 * 14 12 10 17 17 N 1.31518 * 120.00024 * 184.98561 * 16 14 12 18 18 Si 1.86799 * 119.99793 * 4.97779 * 16 14 12 19 19 H 1.48504 * 109.46890 * 84.67628 * 18 16 14 20 20 H 1.48507 * 109.47008 * 204.66985 * 18 16 14 21 21 H 1.48491 * 109.47579 * 324.67142 * 18 16 14 22 22 C 1.50706 * 109.47150 * 180.02562 * 12 10 9 23 23 C 1.38226 * 120.00081 * 65.01819 * 22 12 10 24 24 C 1.38241 * 120.00270 * 179.81142 * 23 22 12 25 25 C 1.38231 * 119.99498 * 0.39884 * 24 23 22 26 26 C 1.38234 * 120.00204 * 359.85390 * 25 24 23 27 27 C 1.38230 * 119.99898 * 359.95642 * 26 25 24 28 28 H 1.09001 * 109.47182 * 299.99845 * 1 2 3 29 29 H 1.08995 * 109.46749 * 60.00185 * 1 2 3 30 30 H 1.09000 * 109.46964 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47331 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47444 * 300.00282 * 3 2 1 33 33 H 1.09001 * 109.47011 * 60.00050 * 3 2 1 34 34 H 1.09007 * 109.46704 * 299.99647 * 4 2 1 35 35 H 1.08999 * 109.47268 * 59.99521 * 4 2 1 36 36 H 1.09000 * 109.47134 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.46942 * 180.02562 * 6 5 2 38 38 H 1.09000 * 109.47259 * 299.99588 * 6 5 2 39 39 H 1.08999 * 109.47774 * 59.99815 * 6 5 2 40 40 H 1.08993 * 109.47411 * 300.00369 * 7 5 2 41 41 H 1.09000 * 109.46964 * 60.00410 * 7 5 2 42 42 H 1.08999 * 109.47243 * 179.97438 * 7 5 2 43 43 H 1.09001 * 109.47011 * 59.99973 * 8 5 2 44 44 H 1.09000 * 109.46942 * 300.00547 * 8 5 2 45 45 H 0.97005 * 120.00021 * 359.97438 * 9 8 5 46 46 H 0.97005 * 119.99741 * 179.97438 * 17 16 14 47 47 H 1.08005 * 119.99914 * 359.97438 * 23 22 12 48 48 H 1.07999 * 119.99912 * 180.22965 * 24 23 22 49 49 H 1.07995 * 119.99951 * 179.83776 * 25 24 23 50 50 H 1.08001 * 120.00370 * 179.97438 * 26 25 24 51 51 H 1.08002 * 119.99890 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 6 1.5299 0.0000 2.4985 7 6 3.5700 -0.7207 1.2496 8 6 1.5301 -2.1638 1.2493 9 7 2.0178 -2.8542 2.4456 10 6 1.6918 -4.1443 2.6593 11 8 0.9948 -4.7338 1.8607 12 6 2.1941 -4.8547 3.8897 13 1 1.8311 -4.3406 4.7797 14 6 3.7010 -4.8553 3.8896 15 1 4.2409 -4.9356 2.9575 16 6 4.3907 -4.7477 5.0785 17 7 5.7021 -4.6495 5.0715 18 14 3.4622 -4.7412 6.6994 19 1 3.2080 -6.1395 7.1299 20 1 4.2724 -4.0452 7.7312 21 1 2.1682 -4.0337 6.5260 22 6 1.6916 -6.2755 3.8898 23 6 2.1088 -7.1562 2.9095 24 6 1.6510 -8.4606 2.9117 25 6 0.7696 -8.8819 3.8897 26 6 0.3483 -7.9998 4.8670 27 6 0.8092 -6.6966 4.8670 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6768 -1.7489 -1.2493 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7215 -1.2490 37 1 1.8937 -0.5135 3.3884 38 1 1.8932 1.0277 2.4985 39 1 0.4399 0.0000 2.4985 40 1 3.9338 -1.2342 0.3597 41 1 3.9330 0.3071 1.2499 42 1 3.9334 -1.2341 2.1398 43 1 1.8934 -2.6776 0.3593 44 1 0.4401 -2.1637 1.2492 45 1 2.5756 -2.3828 3.0842 46 1 6.1873 -4.5734 5.9081 47 1 2.7946 -6.8259 2.1432 48 1 1.9799 -9.1496 2.1479 49 1 0.4098 -9.9002 3.8900 50 1 -0.3407 -8.3288 5.6308 51 1 0.4797 -6.0073 5.6303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460390797.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:47 Heat of formation + Delta-G solvation = -37.510226 kcal Electronic energy + Delta-G solvation = -27963.604362 eV Core-core repulsion = 24440.891171 eV Total energy + Delta-G solvation = -3522.713191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.99670 -38.94874 -37.64493 -34.07984 -33.60495 -31.51234 -31.23036 -30.10190 -28.57102 -28.38407 -27.51529 -25.82645 -25.30532 -23.47485 -21.91307 -21.74626 -20.69051 -19.33129 -17.46824 -17.12323 -16.30146 -16.12806 -15.56496 -14.99437 -14.78915 -14.44211 -14.29137 -14.22678 -14.01789 -13.88883 -13.37995 -13.20774 -12.82035 -12.65344 -12.49119 -12.26770 -12.17312 -12.08649 -12.01063 -11.87835 -11.83215 -11.65676 -11.34904 -11.25252 -11.12184 -11.02375 -10.98701 -10.44213 -10.25759 -10.21150 -10.17438 -10.10610 -9.89789 -9.50664 -8.95302 -8.65146 -8.27518 -8.10339 -7.77652 -6.29495 -4.33047 2.18500 2.25037 3.15281 3.23160 3.28070 3.66610 4.02974 4.22741 4.63895 4.67747 4.73023 4.76163 5.02359 5.14900 5.19986 5.30860 5.44697 5.57617 5.59405 5.62693 5.63972 5.69141 5.74414 5.79401 5.83969 5.91597 5.93254 5.97284 5.99233 6.01305 6.03320 6.06012 6.13612 6.16553 6.21711 6.25952 6.34242 6.36183 6.43429 6.50017 6.55529 6.61873 6.77979 6.88560 7.19502 7.21810 7.28503 7.32457 7.62579 7.83167 8.22283 8.37430 8.71358 9.19565 9.28920 10.81430 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013815 B = 0.004269 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.305643 B = 6557.909249 C = 7651.276266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.054 4.054 3 C -0.143 4.143 4 C -0.149 4.149 5 C -0.064 4.064 6 C -0.147 4.147 7 C -0.148 4.148 8 C 0.129 3.871 9 N -0.725 5.725 10 C 0.534 3.466 11 O -0.565 6.565 12 C 0.017 3.983 13 H 0.071 0.929 14 C -0.508 4.508 15 H 0.082 0.918 16 C 0.085 3.915 17 N -0.883 5.883 18 Si 0.865 3.135 19 H -0.267 1.267 20 H -0.286 1.286 21 H -0.262 1.262 22 C -0.025 4.025 23 C -0.072 4.072 24 C -0.129 4.129 25 C -0.144 4.144 26 C -0.129 4.129 27 C -0.138 4.138 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.404 0.596 46 H 0.268 0.732 47 H 0.116 0.884 48 H 0.110 0.890 49 H 0.108 0.892 50 H 0.109 0.891 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 8.560 -5.878 12.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.054 4.054 3 C -0.200 4.200 4 C -0.206 4.206 5 C -0.064 4.064 6 C -0.204 4.204 7 C -0.205 4.205 8 C 0.005 3.995 9 N -0.378 5.378 10 C 0.323 3.677 11 O -0.444 6.444 12 C -0.004 4.004 13 H 0.089 0.911 14 C -0.545 4.545 15 H 0.100 0.900 16 C -0.119 4.119 17 N -0.519 5.519 18 Si 0.692 3.308 19 H -0.192 1.192 20 H -0.212 1.212 21 H -0.187 1.187 22 C -0.026 4.026 23 C -0.090 4.090 24 C -0.148 4.148 25 C -0.162 4.162 26 C -0.147 4.147 27 C -0.156 4.156 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.240 0.760 46 H 0.078 0.922 47 H 0.134 0.866 48 H 0.128 0.872 49 H 0.126 0.874 50 H 0.127 0.873 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -8.028 8.168 -6.331 13.086 hybrid contribution 0.008 0.123 1.284 1.290 sum -8.020 8.291 -5.047 12.592 Atomic orbital electron populations 1.22017 0.94813 1.02197 1.01481 1.20435 0.95355 0.95208 0.94412 1.21969 1.01309 0.95335 1.01430 1.22021 1.01440 1.00617 0.96492 1.20736 0.96293 0.94299 0.95076 1.22000 1.01141 1.00163 0.97124 1.22003 0.93891 1.01647 1.02985 1.21374 0.98428 0.90743 0.88916 1.45937 1.54260 1.12583 1.24997 1.21073 0.77709 0.80915 0.88044 1.90587 1.39167 1.66275 1.48340 1.18587 0.98529 0.89533 0.93771 0.91078 1.20527 0.86069 1.52282 0.95652 0.90004 1.24970 0.94734 0.93570 0.98670 1.69867 1.06415 1.48007 1.27605 0.87037 0.80170 0.79602 0.83995 1.19181 1.21168 1.18731 1.20075 0.92300 0.97069 0.93205 1.20835 0.97999 0.92365 0.97849 1.21031 0.98669 0.96233 0.98819 1.20850 1.00029 0.98835 0.96503 1.20875 1.00874 0.94013 0.98926 1.20970 0.98846 0.96099 0.99681 0.92363 0.92994 0.92147 0.92264 0.93057 0.92424 0.92116 0.93015 0.92170 0.92269 0.92324 0.92386 0.92230 0.92521 0.91610 0.91946 0.92171 0.76001 0.92174 0.86561 0.87161 0.87365 0.87312 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 7.77 37.16 0.29 -1.19 16 2 C -0.05 -0.55 0.35 -154.51 -0.05 -0.60 16 3 C -0.14 -1.29 7.77 37.16 0.29 -1.01 16 4 C -0.15 -1.56 7.77 37.16 0.29 -1.27 16 5 C -0.06 -0.76 0.11 -154.51 -0.02 -0.78 16 6 C -0.15 -1.67 7.59 37.16 0.28 -1.39 16 7 C -0.15 -1.87 7.60 37.16 0.28 -1.58 16 8 C 0.13 1.97 3.86 -4.05 -0.02 1.96 16 9 N -0.72 -13.14 4.86 -60.30 -0.29 -13.44 16 10 C 0.53 11.62 7.04 -10.99 -0.08 11.55 16 11 O -0.56 -13.48 15.37 5.55 0.09 -13.40 16 12 C 0.02 0.39 1.90 -94.08 -0.18 0.22 16 13 H 0.07 1.60 4.88 -51.93 -0.25 1.34 16 14 C -0.51 -12.96 8.06 -34.44 -0.28 -13.24 16 15 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 16 C 0.09 2.24 5.47 -17.82 -0.10 2.14 16 17 N -0.88 -24.75 13.96 55.43 0.77 -23.97 16 18 Si 0.86 19.92 27.23 -169.99 -4.63 15.29 16 19 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.26 -5.62 6.06 56.52 0.34 -5.28 16 22 C -0.03 -0.58 4.11 -104.62 -0.43 -1.01 16 23 C -0.07 -1.60 8.25 -39.58 -0.33 -1.93 16 24 C -0.13 -2.49 10.05 -39.58 -0.40 -2.88 16 25 C -0.14 -2.57 10.05 -39.59 -0.40 -2.97 16 26 C -0.13 -2.37 10.05 -39.59 -0.40 -2.77 16 27 C -0.14 -2.85 9.50 -39.59 -0.38 -3.23 16 28 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 31 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 34 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 37 H 0.06 0.73 6.86 -51.93 -0.36 0.37 16 38 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 39 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 40 H 0.06 0.76 6.43 -51.93 -0.33 0.43 16 41 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 42 H 0.06 0.95 6.86 -51.93 -0.36 0.60 16 43 H 0.06 1.02 6.43 -51.93 -0.33 0.69 16 44 H 0.06 0.94 6.43 -51.93 -0.33 0.60 16 45 H 0.40 7.09 6.05 -40.82 -0.25 6.85 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.12 2.66 7.93 -52.48 -0.42 2.25 16 48 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 49 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 50 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 51 H 0.11 2.06 7.95 -52.49 -0.42 1.64 16 LS Contribution 381.61 15.07 5.75 5.75 Total: -1.00 -29.17 381.61 -8.13 -37.30 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -8.21 Total: 12.44 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -1.61 Total: -19.98 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.48 Total: -37.41 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.63 Total: 15.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.17 -8.13 -37.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460390797.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.209 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds