Wall clock time and date at job start Tue Mar 31 2020 11:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47212 * 2 1 4 4 C 1.38283 * 120.00592 * 269.97600 * 3 2 1 5 5 C 1.37974 * 119.95987 * 179.97438 * 4 3 2 6 6 C 1.39145 * 120.21240 * 0.02562 * 5 4 3 7 7 C 1.38373 * 119.69743 * 0.15282 * 6 5 4 8 8 C 1.38103 * 120.00688 * 90.00104 * 3 2 1 9 9 C 1.50767 * 121.40828 * 179.47436 * 7 6 5 10 10 H 1.08994 * 109.43610 * 257.80958 * 9 7 6 11 11 N 1.46898 * 109.43917 * 137.93681 * 9 7 6 12 12 C 1.46898 * 111.00147 * 154.99698 * 11 9 7 13 13 C 1.53004 * 109.47164 * 180.02562 * 12 11 9 14 14 C 1.52999 * 109.47077 * 300.00202 * 13 12 11 15 15 C 1.52999 * 109.46867 * 60.00408 * 13 12 11 16 16 C 1.52995 * 109.46989 * 180.02562 * 13 12 11 17 17 C 1.50708 * 109.47146 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99593 * 359.97438 * 17 16 13 19 19 C 1.37870 * 119.99936 * 179.97438 * 17 16 13 20 20 N 1.31509 * 120.00459 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99805 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47172 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47257 * 120.00024 * 21 19 17 24 24 H 1.48503 * 109.47094 * 240.00059 * 21 19 17 25 25 C 1.53062 * 109.68603 * 17.87126 * 9 7 6 26 26 C 1.53408 * 108.31540 * 311.82776 * 25 9 7 27 27 O 1.35837 * 118.50136 * 180.26448 * 6 5 4 28 28 H 1.09002 * 109.46927 * 59.99607 * 1 2 3 29 29 H 1.08991 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47554 * 300.00488 * 1 2 3 31 31 H 1.08997 * 109.47116 * 239.99668 * 2 1 3 32 32 H 1.09002 * 109.46577 * 119.99502 * 2 1 3 33 33 H 1.08000 * 120.02724 * 359.94501 * 4 3 2 34 34 H 1.07997 * 119.89663 * 179.97438 * 5 4 3 35 35 H 1.08000 * 119.84610 * 0.24503 * 8 3 2 36 36 H 1.00903 * 110.99489 * 31.04870 * 11 9 7 37 37 H 1.08997 * 109.47430 * 300.00433 * 12 11 9 38 38 H 1.09008 * 109.46805 * 60.00870 * 12 11 9 39 39 H 1.09002 * 109.47208 * 60.00296 * 14 13 12 40 40 H 1.08999 * 109.47361 * 179.97438 * 14 13 12 41 41 H 1.08997 * 109.47821 * 300.00244 * 14 13 12 42 42 H 1.08997 * 109.47215 * 60.00051 * 15 13 12 43 43 H 1.09005 * 109.46593 * 179.97438 * 15 13 12 44 44 H 1.09002 * 109.47280 * 299.99620 * 15 13 12 45 45 H 1.08997 * 109.47132 * 299.99972 * 16 13 12 46 46 H 1.08998 * 109.47503 * 60.00011 * 16 13 12 47 47 H 0.97002 * 120.00357 * 179.97438 * 20 19 17 48 48 H 1.09004 * 109.70189 * 192.11768 * 25 9 7 49 49 H 1.09007 * 109.69150 * 71.52970 * 25 9 7 50 50 H 1.08997 * 109.68452 * 304.96870 * 26 25 9 51 51 H 1.09006 * 109.68210 * 184.40949 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2633 2.0726 -1.1975 5 6 2.7228 3.3736 -1.1964 6 6 2.9554 4.0330 0.0066 7 6 2.7268 3.3770 1.2033 8 6 2.2626 2.0719 1.1959 9 6 2.9770 4.0504 2.5288 10 1 3.9186 3.6928 2.9453 11 7 1.8816 3.7309 3.4540 12 6 2.3253 3.8334 4.8506 13 6 1.1601 3.4936 5.7821 14 6 0.0104 4.4735 5.5390 15 6 0.6825 2.0673 5.5021 16 6 1.6221 3.6010 7.2367 17 6 0.4745 3.2657 8.1543 18 1 -0.4881 3.0029 7.7412 19 6 0.6536 3.2946 9.5210 20 7 1.8256 3.6152 10.0241 21 14 -0.7691 2.8798 10.6584 22 1 -1.9715 2.5559 9.8493 23 1 -0.4072 1.7089 11.4970 24 1 -1.0593 4.0443 11.5330 25 6 3.0508 5.5664 2.3311 26 6 3.9898 5.8537 1.1524 27 8 3.4023 5.3151 -0.0328 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8901 33 1 2.0847 1.5636 -2.1331 34 1 2.9032 3.8816 -2.1322 35 1 2.0856 1.5592 2.1298 36 1 1.5011 2.8164 3.2616 37 1 3.1441 3.1351 5.0239 38 1 2.6660 4.8495 5.0500 39 1 -0.3188 4.3974 4.5027 40 1 -0.8199 4.2312 6.2023 41 1 0.3506 5.4896 5.7385 42 1 1.5015 1.3693 5.6753 43 1 -0.1474 1.8252 6.1661 44 1 0.3532 1.9913 4.4658 45 1 2.4412 2.9032 7.4102 46 1 1.9621 4.6172 7.4360 47 1 1.9515 3.6359 10.9857 48 1 3.4405 6.0363 3.2342 49 1 2.0569 5.9572 2.1127 50 1 4.9565 5.3825 1.3298 51 1 4.1203 6.9302 1.0410 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474105105.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:04 Heat of formation + Delta-G solvation = -55.378010 kcal Electronic energy + Delta-G solvation = -27314.134592 eV Core-core repulsion = 23790.646596 eV Total energy + Delta-G solvation = -3523.487996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.81572 -39.24334 -38.91768 -36.69252 -34.54515 -34.43551 -32.25107 -31.50904 -29.96494 -28.93698 -27.92905 -27.07624 -25.79185 -25.05231 -23.97621 -23.63599 -22.38439 -20.48650 -19.59588 -18.88221 -18.33849 -17.67840 -16.93680 -16.71519 -16.32743 -15.99466 -15.60470 -15.47558 -15.19792 -15.10514 -14.80414 -14.57463 -14.46375 -14.15868 -14.06548 -13.88985 -13.82823 -13.55890 -13.25895 -12.93936 -12.84476 -12.69280 -12.59354 -12.41368 -12.29431 -12.22966 -12.12187 -11.91838 -11.83379 -11.70243 -11.56144 -11.45356 -11.35682 -10.88491 -10.73081 -10.51689 -9.93938 -9.35872 -8.93508 -8.14685 -6.21447 0.33531 0.43547 1.39466 1.40841 1.52726 2.35773 2.43188 2.71889 3.19502 3.20970 3.53425 3.69140 3.81356 3.96553 4.05413 4.11438 4.14766 4.19971 4.29413 4.33731 4.38302 4.47352 4.54723 4.59578 4.61578 4.66555 4.71317 4.77883 4.80366 4.91850 4.96352 4.99389 5.04577 5.12515 5.14742 5.17015 5.19168 5.19596 5.33945 5.43578 5.45348 5.50007 5.52390 5.56297 5.63273 5.70727 5.84348 5.86768 5.91707 6.03518 6.35807 6.41781 6.47958 6.93639 7.45983 8.97813 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015957 B = 0.003122 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.246369 B = 8967.772666 C =10294.050310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.114 4.114 4 C -0.083 4.083 5 C -0.154 4.154 6 C 0.117 3.883 7 C -0.164 4.164 8 C -0.093 4.093 9 C 0.129 3.871 10 H 0.049 0.951 11 N -0.673 5.673 12 C 0.082 3.918 13 C -0.054 4.054 14 C -0.106 4.106 15 C -0.123 4.123 16 C 0.041 3.959 17 C -0.513 4.513 18 H 0.065 0.935 19 C -0.003 4.003 20 N -0.937 5.937 21 Si 0.955 3.045 22 H -0.261 1.261 23 H -0.282 1.282 24 H -0.283 1.283 25 C -0.145 4.145 26 C 0.063 3.937 27 O -0.328 6.328 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.087 0.913 32 H 0.069 0.931 33 H 0.154 0.846 34 H 0.144 0.856 35 H 0.120 0.880 36 H 0.344 0.656 37 H 0.019 0.981 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.032 0.968 42 H 0.038 0.962 43 H 0.048 0.952 44 H 0.062 0.938 45 H -0.015 1.015 46 H -0.015 1.015 47 H 0.260 0.740 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.283 -2.822 -24.962 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.114 4.114 4 C -0.100 4.100 5 C -0.173 4.173 6 C 0.072 3.928 7 C -0.165 4.165 8 C -0.111 4.111 9 C 0.020 3.980 10 H 0.067 0.933 11 N -0.307 5.307 12 C -0.047 4.047 13 C -0.054 4.054 14 C -0.163 4.163 15 C -0.180 4.180 16 C 0.004 3.996 17 C -0.551 4.551 18 H 0.083 0.917 19 C -0.200 4.200 20 N -0.579 5.579 21 Si 0.780 3.220 22 H -0.185 1.185 23 H -0.208 1.208 24 H -0.209 1.209 25 C -0.183 4.183 26 C -0.012 4.012 27 O -0.243 6.243 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.172 0.828 34 H 0.161 0.839 35 H 0.138 0.862 36 H 0.167 0.833 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.051 0.949 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.003 0.997 46 H 0.004 0.996 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.088 -2.044 -24.964 25.135 hybrid contribution 0.275 -0.741 1.810 1.975 sum 2.363 -2.784 -23.154 23.440 Atomic orbital electron populations 1.21751 0.94529 1.02267 1.01836 1.20517 0.96273 0.91285 1.03545 1.19992 1.01246 0.97665 0.92544 1.21107 0.97012 0.93324 0.98602 1.20843 1.04750 0.95345 0.96312 1.18886 0.96387 0.84011 0.93553 1.19897 1.06586 0.96200 0.93864 1.20828 0.98494 0.93304 0.98521 1.20276 0.93128 0.95448 0.89168 0.93306 1.60662 1.31924 1.36256 1.01875 1.21906 0.95560 0.99932 0.87314 1.20483 0.94951 0.95869 0.94132 1.21491 0.97263 0.97293 1.00292 1.21688 1.00666 0.95321 1.00327 1.18989 0.95022 0.94175 0.91418 1.21640 0.97757 1.44441 0.91268 0.91653 1.25895 0.98027 0.95770 1.00328 1.70107 1.24647 1.50758 1.12362 0.85545 0.79906 0.77641 0.78868 1.18507 1.20797 1.20871 1.22208 1.01301 0.95131 0.99658 1.23167 0.95002 1.00944 0.82074 1.85942 1.74754 1.24874 1.38723 0.92377 0.91300 0.93671 0.89441 0.91202 0.82844 0.83865 0.86214 0.83299 0.96323 0.92004 0.91830 0.94233 0.94918 0.94276 0.93260 0.91913 0.99711 0.99630 0.93169 0.89586 0.90766 0.91221 0.84970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.89 71.98 0.71 -1.41 16 2 C -0.08 -1.16 6.06 29.85 0.18 -0.98 16 3 C -0.11 -2.18 5.13 -19.89 -0.10 -2.28 16 4 C -0.08 -1.43 9.70 22.22 0.22 -1.21 16 5 C -0.15 -3.08 9.94 22.42 0.22 -2.86 16 6 C 0.12 2.81 6.47 22.52 0.15 2.96 16 7 C -0.16 -4.07 5.56 -19.75 -0.11 -4.18 16 8 C -0.09 -2.12 8.57 22.30 0.19 -1.93 16 9 C 0.13 3.31 2.65 44.21 0.12 3.43 16 10 H 0.05 1.29 7.80 -2.39 -0.02 1.27 16 11 N -0.67 -19.30 5.51 -495.23 -2.73 -22.03 16 12 C 0.08 2.80 4.44 86.30 0.38 3.18 16 13 C -0.05 -2.14 0.60 -52.18 -0.03 -2.17 16 14 C -0.11 -4.07 8.06 71.98 0.58 -3.49 16 15 C -0.12 -4.44 7.89 71.98 0.57 -3.87 16 16 C 0.04 2.14 4.04 29.85 0.12 2.26 16 17 C -0.51 -28.33 7.65 25.60 0.20 -28.13 16 18 H 0.07 3.48 5.68 -2.91 -0.02 3.46 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.94 -57.17 13.29 21.44 0.28 -56.88 16 21 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 25 C -0.14 -3.32 5.60 30.75 0.17 -3.15 16 26 C 0.06 1.19 7.03 72.12 0.51 1.70 16 27 O -0.33 -7.68 10.27 -91.72 -0.94 -8.62 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.98 8.09 -2.39 -0.02 0.96 16 32 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 33 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.12 2.69 6.62 -2.91 -0.02 2.67 16 36 H 0.34 9.51 4.23 -89.69 -0.38 9.13 16 37 H 0.02 0.65 8.05 -2.39 -0.02 0.63 16 38 H 0.06 2.17 7.70 -2.38 -0.02 2.16 16 39 H 0.06 2.16 7.60 -2.39 -0.02 2.14 16 40 H 0.04 1.62 6.62 -2.39 -0.02 1.60 16 41 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.94 6.62 -2.38 -0.02 1.92 16 44 H 0.06 1.88 6.57 -2.39 -0.02 1.86 16 45 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 46 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 47 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 48 H 0.09 1.90 7.80 -2.38 -0.02 1.89 16 49 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 50 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -64.91 392.00 3.69 -61.22 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: 0.51 Total: 21.72 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 4.53 Total: -41.88 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -2.45 Total: -78.91 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.94 Total: -8.62 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.91 3.69 -61.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474105105.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.843 kcal (2) G-P(sol) polarization free energy of solvation -64.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds