Wall clock time and date at job start Tue Mar 31 2020 12:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47240 * 2 1 4 4 C 1.52997 * 109.47020 * 60.00169 * 3 2 1 5 5 C 1.53000 * 109.47236 * 59.99602 * 4 3 2 6 6 C 1.52999 * 109.47566 * 300.00270 * 3 2 1 7 7 C 1.53007 * 109.46763 * 299.99920 * 6 3 2 8 8 C 1.52998 * 109.47240 * 179.97438 * 3 2 1 9 9 N 1.46501 * 109.47296 * 180.02562 * 8 3 2 10 10 C 1.34782 * 120.00067 * 180.02562 * 9 8 3 11 11 O 1.21284 * 119.99965 * 359.97438 * 10 9 8 12 12 C 1.50694 * 119.99690 * 179.97438 * 10 9 8 13 13 H 1.09006 * 109.47498 * 60.00124 * 12 10 9 14 14 C 1.50701 * 109.47442 * 299.99703 * 12 10 9 15 15 H 1.07992 * 119.99866 * 124.61644 * 14 12 10 16 16 C 1.37876 * 119.99864 * 304.34642 * 14 12 10 17 17 N 1.31521 * 119.99994 * 6.37673 * 16 14 12 18 18 Si 1.86794 * 120.00107 * 186.37862 * 16 14 12 19 19 H 1.48501 * 109.47116 * 59.99817 * 18 16 14 20 20 H 1.48494 * 109.47404 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47157 * 299.99960 * 18 16 14 22 22 C 1.50709 * 109.46917 * 179.97438 * 12 10 9 23 23 C 1.38236 * 119.99889 * 313.11575 * 22 12 10 24 24 C 1.38233 * 119.99818 * 179.80682 * 23 22 12 25 25 C 1.38235 * 119.99868 * 0.39958 * 24 23 22 26 26 C 1.38234 * 119.99987 * 359.85572 * 25 24 23 27 27 C 1.38228 * 120.00058 * 359.95472 * 26 25 24 28 28 H 1.08998 * 109.47175 * 59.99739 * 1 2 3 29 29 H 1.08997 * 109.47431 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47096 * 299.99574 * 1 2 3 31 31 H 1.09004 * 109.47252 * 240.00341 * 2 1 3 32 32 H 1.08998 * 109.47175 * 120.00261 * 2 1 3 33 33 H 1.09000 * 109.47732 * 179.97438 * 4 3 2 34 34 H 1.09006 * 109.47392 * 300.00359 * 4 3 2 35 35 H 1.09006 * 109.47289 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47477 * 300.00175 * 5 4 3 37 37 H 1.09002 * 109.46952 * 60.00456 * 5 4 3 38 38 H 1.09002 * 109.47194 * 59.99459 * 6 3 2 39 39 H 1.08997 * 109.47133 * 179.97438 * 6 3 2 40 40 H 1.09001 * 109.47024 * 59.99691 * 7 6 3 41 41 H 1.08998 * 109.46967 * 179.97438 * 7 6 3 42 42 H 1.08995 * 109.47142 * 299.99973 * 7 6 3 43 43 H 1.09001 * 109.47455 * 59.99848 * 8 3 2 44 44 H 1.09008 * 109.47144 * 300.00324 * 8 3 2 45 45 H 0.96995 * 119.99676 * 359.97438 * 9 8 3 46 46 H 0.97001 * 119.99779 * 179.97438 * 17 16 14 47 47 H 1.07997 * 119.99766 * 359.97438 * 23 22 12 48 48 H 1.08003 * 120.00253 * 180.22975 * 24 23 22 49 49 H 1.08003 * 119.99843 * 179.83086 * 25 24 23 50 50 H 1.08006 * 119.99914 * 179.97438 * 26 25 24 51 51 H 1.08006 * 119.99801 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 2.0400 1.4424 2.4985 6 6 1.5300 2.1638 -1.2492 7 6 2.0400 1.4426 -2.4985 8 6 3.5700 1.4425 0.0006 9 7 4.0584 2.8237 0.0013 10 6 5.3835 3.0699 0.0014 11 8 6.1716 2.1481 0.0014 12 6 5.8858 4.4907 0.0014 13 1 5.5224 5.0046 0.8914 14 6 5.3836 5.2012 -1.2291 15 1 4.8256 6.1206 -1.1318 16 6 5.6414 4.6802 -2.4793 17 7 6.2145 3.5021 -2.5955 18 14 5.1766 5.6475 -4.0082 19 1 5.8922 6.9487 -4.0073 20 1 5.5563 4.8741 -5.2177 21 1 3.7113 5.8884 -4.0152 22 6 7.3928 4.4907 0.0022 23 6 8.0836 3.6726 0.8765 24 6 9.4659 3.6697 0.8745 25 6 10.1575 4.4909 0.0038 26 6 9.4667 5.3129 -0.8669 27 6 8.0844 5.3129 -0.8675 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8937 3.1912 1.2496 34 1 0.4400 2.1637 1.2493 35 1 1.6770 1.9565 3.3885 36 1 1.6766 0.4147 2.4985 37 1 3.1300 1.4424 2.4985 38 1 0.4400 2.1638 -1.2492 39 1 1.8930 3.1916 -1.2489 40 1 1.6767 0.4149 -2.4985 41 1 1.6764 1.9562 -3.3884 42 1 3.1300 1.4425 -2.4985 43 1 3.9337 0.9285 -0.8891 44 1 3.9330 0.9287 0.8909 45 1 3.4280 3.5609 0.0008 46 1 6.3955 3.1355 -3.4751 47 1 7.5432 3.0338 1.5594 48 1 10.0056 3.0278 1.5550 49 1 11.2375 4.4906 0.0040 50 1 10.0071 5.9548 -1.5469 51 1 7.5448 5.9549 -1.5481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001517365488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:52 Heat of formation + Delta-G solvation = -36.350069 kcal Electronic energy + Delta-G solvation = -28564.479934 eV Core-core repulsion = 25041.817052 eV Total energy + Delta-G solvation = -3522.662883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.54468 -38.50590 -37.01814 -33.53970 -32.97032 -32.04797 -30.79556 -30.50849 -29.67488 -27.91418 -26.71864 -25.09575 -23.94801 -22.82242 -21.73404 -21.24330 -20.40598 -19.06368 -17.82239 -16.80722 -16.01340 -15.66295 -15.24808 -15.07970 -14.79778 -14.71259 -14.40598 -13.87494 -13.60863 -13.17508 -12.94899 -12.79729 -12.63618 -12.47621 -12.38018 -12.25867 -12.13151 -12.02702 -11.75941 -11.39127 -11.32351 -11.27963 -11.18177 -11.12405 -10.92098 -10.77145 -10.44825 -10.34280 -10.08316 -10.01660 -10.01111 -9.87022 -9.63591 -9.34495 -8.69251 -8.17383 -7.76856 -7.67435 -7.38035 -6.10955 -4.24530 2.55843 2.61129 3.21865 3.29766 3.30926 4.23621 4.33339 4.54399 4.88362 4.94361 4.96296 5.05516 5.18700 5.28898 5.34175 5.48782 5.55125 5.66013 5.70812 5.80796 5.85541 5.86360 5.94406 5.97105 5.98807 6.06344 6.07639 6.15120 6.18403 6.24790 6.27121 6.35937 6.40237 6.43691 6.53867 6.57529 6.63276 6.67967 6.70690 6.81213 6.87170 6.98338 7.15234 7.22722 7.55713 7.64509 7.72394 7.73441 7.83286 8.17777 8.29910 8.69755 8.93500 9.41187 9.86542 10.90498 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.004906 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.154177 B = 5706.018697 C = 7043.842919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.066 4.066 4 C -0.113 4.113 5 C -0.155 4.155 6 C -0.112 4.112 7 C -0.154 4.154 8 C 0.137 3.863 9 N -0.730 5.730 10 C 0.554 3.446 11 O -0.552 6.552 12 C 0.056 3.944 13 H 0.054 0.946 14 C -0.541 4.541 15 H 0.064 0.936 16 C 0.079 3.921 17 N -0.839 5.839 18 Si 0.882 3.118 19 H -0.274 1.274 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.014 4.014 23 C -0.099 4.099 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.147 4.147 27 C -0.075 4.075 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.067 0.933 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.393 0.607 46 H 0.265 0.735 47 H 0.108 0.892 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.101 0.899 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -2.823 5.535 10.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C -0.067 4.067 4 C -0.151 4.151 5 C -0.212 4.212 6 C -0.149 4.149 7 C -0.211 4.211 8 C 0.013 3.987 9 N -0.383 5.383 10 C 0.343 3.657 11 O -0.429 6.429 12 C 0.034 3.966 13 H 0.072 0.928 14 C -0.579 4.579 15 H 0.082 0.918 16 C -0.129 4.129 17 N -0.471 5.471 18 Si 0.709 3.291 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.015 4.015 23 C -0.117 4.117 24 C -0.162 4.162 25 C -0.164 4.164 26 C -0.165 4.165 27 C -0.092 4.092 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.227 0.773 46 H 0.075 0.925 47 H 0.126 0.874 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.120 0.880 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.897 -3.666 5.388 10.239 hybrid contribution -0.445 0.633 -1.294 1.507 sum -8.342 -3.033 4.095 9.775 Atomic orbital electron populations 1.21851 0.96119 1.00995 1.01992 1.21566 0.95675 0.95863 1.02107 1.20816 0.95199 0.95494 0.95159 1.21579 1.00066 0.99550 0.93876 1.21868 1.02002 1.00166 0.97143 1.21556 0.99614 0.99931 0.93804 1.21846 1.02742 0.99503 0.97043 1.21133 0.91112 0.85542 1.00947 1.45748 1.07820 1.06442 1.78300 1.20824 0.80748 0.92034 0.72074 1.90519 1.55232 1.47215 1.49968 1.17875 0.89735 0.91047 0.97917 0.92814 1.20619 1.38365 1.09716 0.89176 0.91765 1.24999 0.94401 0.94602 0.98871 1.70025 1.38346 1.14741 1.24018 0.86817 0.79048 0.80387 0.82855 1.19989 1.21341 1.20131 1.19881 0.96056 0.93051 0.92503 1.20991 0.93412 0.97807 0.99467 1.20840 0.94658 1.00289 1.00368 1.20774 0.98172 0.99042 0.98407 1.20995 0.95055 1.00647 0.99848 1.21188 0.92417 0.98548 0.97095 0.92456 0.93368 0.92551 0.91677 0.91830 0.91737 0.92075 0.93347 0.92804 0.92057 0.92384 0.91375 0.93213 0.93503 0.91365 0.92348 0.93005 0.77316 0.92517 0.87401 0.88092 0.88203 0.88039 0.85445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.21 37.16 0.34 -1.15 16 2 C -0.11 -1.31 4.28 -26.73 -0.11 -1.43 16 3 C -0.07 -0.86 0.11 -154.51 -0.02 -0.88 16 4 C -0.11 -1.33 4.46 -26.73 -0.12 -1.45 16 5 C -0.15 -1.77 9.21 37.16 0.34 -1.43 16 6 C -0.11 -1.51 4.46 -26.73 -0.12 -1.63 16 7 C -0.15 -2.27 9.21 37.16 0.34 -1.93 16 8 C 0.14 2.34 3.86 -4.04 -0.02 2.32 16 9 N -0.73 -14.05 4.86 -60.29 -0.29 -14.34 16 10 C 0.55 12.91 5.28 -10.99 -0.06 12.85 16 11 O -0.55 -14.65 13.86 5.55 0.08 -14.57 16 12 C 0.06 1.30 2.78 -94.07 -0.26 1.04 16 13 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.54 -13.06 7.11 -34.44 -0.24 -13.30 16 15 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 16 C 0.08 1.98 3.90 -17.82 -0.07 1.92 16 17 N -0.84 -22.63 11.12 55.43 0.62 -22.01 16 18 Si 0.88 19.78 29.54 -169.99 -5.02 14.76 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.01 -0.33 4.63 -104.62 -0.48 -0.82 16 23 C -0.10 -2.25 8.21 -39.58 -0.32 -2.57 16 24 C -0.14 -2.96 10.05 -39.58 -0.40 -3.36 16 25 C -0.15 -2.90 10.05 -39.58 -0.40 -3.30 16 26 C -0.15 -3.09 10.05 -39.59 -0.40 -3.49 16 27 C -0.07 -1.75 8.46 -39.59 -0.33 -2.08 16 28 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.52 6.43 -51.93 -0.33 0.19 16 31 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 32 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 33 H 0.06 0.81 6.86 -51.93 -0.36 0.45 16 34 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 37 H 0.06 0.81 6.43 -51.93 -0.33 0.48 16 38 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 39 H 0.07 1.03 6.86 -51.93 -0.36 0.68 16 40 H 0.05 0.65 6.43 -51.93 -0.33 0.31 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.23 6.43 -51.93 -0.33 0.89 16 43 H 0.06 1.15 6.43 -51.93 -0.33 0.82 16 44 H 0.05 0.91 6.43 -51.92 -0.33 0.57 16 45 H 0.39 7.06 6.05 -40.82 -0.25 6.81 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.11 2.44 6.99 -52.49 -0.37 2.08 16 48 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 49 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 50 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 51 H 0.13 3.07 6.05 -52.48 -0.32 2.76 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -28.36 378.83 -9.40 -37.75 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -8.15 Total: 13.40 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -2.33 Total: -20.69 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.32 Total: -36.35 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.08 Total: -14.57 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -28.36 -9.40 -37.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001517365488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.405 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds