Wall clock time and date at job start Tue Mar 31 2020 12:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47240 * 2 1 4 4 C 1.52997 * 109.47020 * 60.00169 * 3 2 1 5 5 C 1.53000 * 109.47236 * 59.99602 * 4 3 2 6 6 C 1.52999 * 109.47566 * 300.00270 * 3 2 1 7 7 C 1.53007 * 109.46763 * 299.99920 * 6 3 2 8 8 C 1.52998 * 109.47240 * 179.97438 * 3 2 1 9 9 N 1.46501 * 109.47296 * 180.02562 * 8 3 2 10 10 C 1.34782 * 120.00067 * 180.02562 * 9 8 3 11 11 O 1.21284 * 119.99965 * 359.97438 * 10 9 8 12 12 C 1.50694 * 119.99690 * 179.97438 * 10 9 8 13 13 H 1.09006 * 109.47498 * 60.00124 * 12 10 9 14 14 C 1.50701 * 109.47442 * 299.99703 * 12 10 9 15 15 H 1.07992 * 119.99866 * 124.61644 * 14 12 10 16 16 C 1.37876 * 119.99864 * 304.34642 * 14 12 10 17 17 N 1.31521 * 119.99994 * 6.37673 * 16 14 12 18 18 Si 1.86794 * 120.00107 * 186.37862 * 16 14 12 19 19 H 1.48501 * 109.47116 * 59.99817 * 18 16 14 20 20 H 1.48494 * 109.47404 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47157 * 299.99960 * 18 16 14 22 22 C 1.50709 * 109.46917 * 179.97438 * 12 10 9 23 23 C 1.38236 * 119.99889 * 313.11575 * 22 12 10 24 24 C 1.38233 * 119.99818 * 179.80682 * 23 22 12 25 25 C 1.38235 * 119.99868 * 0.39958 * 24 23 22 26 26 C 1.38234 * 119.99987 * 359.85572 * 25 24 23 27 27 C 1.38228 * 120.00058 * 359.95472 * 26 25 24 28 28 H 1.08998 * 109.47175 * 59.99739 * 1 2 3 29 29 H 1.08997 * 109.47431 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47096 * 299.99574 * 1 2 3 31 31 H 1.09004 * 109.47252 * 240.00341 * 2 1 3 32 32 H 1.08998 * 109.47175 * 120.00261 * 2 1 3 33 33 H 1.09000 * 109.47732 * 179.97438 * 4 3 2 34 34 H 1.09006 * 109.47392 * 300.00359 * 4 3 2 35 35 H 1.09006 * 109.47289 * 179.97438 * 5 4 3 36 36 H 1.09001 * 109.47477 * 300.00175 * 5 4 3 37 37 H 1.09002 * 109.46952 * 60.00456 * 5 4 3 38 38 H 1.09002 * 109.47194 * 59.99459 * 6 3 2 39 39 H 1.08997 * 109.47133 * 179.97438 * 6 3 2 40 40 H 1.09001 * 109.47024 * 59.99691 * 7 6 3 41 41 H 1.08998 * 109.46967 * 179.97438 * 7 6 3 42 42 H 1.08995 * 109.47142 * 299.99973 * 7 6 3 43 43 H 1.09001 * 109.47455 * 59.99848 * 8 3 2 44 44 H 1.09008 * 109.47144 * 300.00324 * 8 3 2 45 45 H 0.96995 * 119.99676 * 359.97438 * 9 8 3 46 46 H 0.97001 * 119.99779 * 179.97438 * 17 16 14 47 47 H 1.07997 * 119.99766 * 359.97438 * 23 22 12 48 48 H 1.08003 * 120.00253 * 180.22975 * 24 23 22 49 49 H 1.08003 * 119.99843 * 179.83086 * 25 24 23 50 50 H 1.08006 * 119.99914 * 179.97438 * 26 25 24 51 51 H 1.08006 * 119.99801 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2492 5 6 2.0400 1.4424 2.4985 6 6 1.5300 2.1638 -1.2492 7 6 2.0400 1.4426 -2.4985 8 6 3.5700 1.4425 0.0006 9 7 4.0584 2.8237 0.0013 10 6 5.3835 3.0699 0.0014 11 8 6.1716 2.1481 0.0014 12 6 5.8858 4.4907 0.0014 13 1 5.5224 5.0046 0.8914 14 6 5.3836 5.2012 -1.2291 15 1 4.8256 6.1206 -1.1318 16 6 5.6414 4.6802 -2.4793 17 7 6.2145 3.5021 -2.5955 18 14 5.1766 5.6475 -4.0082 19 1 5.8922 6.9487 -4.0073 20 1 5.5563 4.8741 -5.2177 21 1 3.7113 5.8884 -4.0152 22 6 7.3928 4.4907 0.0022 23 6 8.0836 3.6726 0.8765 24 6 9.4659 3.6697 0.8745 25 6 10.1575 4.4909 0.0038 26 6 9.4667 5.3129 -0.8669 27 6 8.0844 5.3129 -0.8675 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8937 3.1912 1.2496 34 1 0.4400 2.1637 1.2493 35 1 1.6770 1.9565 3.3885 36 1 1.6766 0.4147 2.4985 37 1 3.1300 1.4424 2.4985 38 1 0.4400 2.1638 -1.2492 39 1 1.8930 3.1916 -1.2489 40 1 1.6767 0.4149 -2.4985 41 1 1.6764 1.9562 -3.3884 42 1 3.1300 1.4425 -2.4985 43 1 3.9337 0.9285 -0.8891 44 1 3.9330 0.9287 0.8909 45 1 3.4280 3.5609 0.0008 46 1 6.3955 3.1355 -3.4751 47 1 7.5432 3.0338 1.5594 48 1 10.0056 3.0278 1.5550 49 1 11.2375 4.4906 0.0040 50 1 10.0071 5.9548 -1.5469 51 1 7.5448 5.9549 -1.5481 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001517365488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:51 Heat of formation + Delta-G solvation = -49.890230 kcal Electronic energy + Delta-G solvation = -28565.067080 eV Core-core repulsion = 25041.817052 eV Total energy + Delta-G solvation = -3523.250028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98887 -40.03092 -38.68804 -35.42923 -34.52556 -33.11468 -32.63304 -31.52025 -31.37171 -29.47678 -28.18140 -26.34071 -25.66591 -24.01082 -22.95048 -22.79599 -22.06386 -20.83132 -19.05253 -18.54349 -17.57083 -17.03820 -16.81193 -16.67924 -16.37339 -16.03494 -15.78601 -15.50217 -15.33201 -14.80946 -14.23192 -13.99514 -13.95159 -13.92114 -13.82289 -13.62106 -13.55059 -13.49984 -13.04878 -12.83483 -12.74304 -12.69102 -12.56531 -12.38038 -12.29254 -12.23046 -12.12852 -11.77092 -11.47288 -11.40348 -11.21918 -11.13383 -11.03466 -10.96116 -10.63606 -10.05090 -9.46253 -9.39087 -9.10416 -8.06234 -6.22968 0.86586 0.90867 1.41227 1.44770 1.49423 2.37975 2.53687 2.92627 3.22010 3.36126 3.75240 3.88754 3.90094 4.29483 4.31324 4.33361 4.34938 4.49160 4.52853 4.59239 4.62501 4.63817 4.64757 4.73272 4.76510 4.81090 4.91977 4.93803 5.00557 5.03994 5.07117 5.11430 5.16485 5.17226 5.21141 5.27824 5.35775 5.39428 5.45096 5.46954 5.50212 5.52078 5.53873 5.71789 5.75352 5.87819 5.93431 5.98542 6.12293 6.42410 6.51968 6.78619 7.21119 7.44991 8.06897 8.93534 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013940 B = 0.004906 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.154177 B = 5706.018697 C = 7043.842919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.113 4.113 3 C -0.055 4.055 4 C -0.110 4.110 5 C -0.152 4.152 6 C -0.108 4.108 7 C -0.149 4.149 8 C 0.142 3.858 9 N -0.717 5.717 10 C 0.552 3.448 11 O -0.590 6.590 12 C 0.046 3.954 13 H 0.063 0.937 14 C -0.535 4.535 15 H 0.069 0.931 16 C 0.048 3.952 17 N -0.869 5.869 18 Si 0.932 3.068 19 H -0.269 1.269 20 H -0.299 1.299 21 H -0.267 1.267 22 C -0.036 4.036 23 C -0.117 4.117 24 C -0.145 4.145 25 C -0.142 4.142 26 C -0.151 4.151 27 C -0.097 4.097 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.035 0.965 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.046 0.954 45 H 0.399 0.601 46 H 0.254 0.746 47 H 0.098 0.902 48 H 0.130 0.870 49 H 0.139 0.861 50 H 0.128 0.872 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.732 -2.504 6.080 11.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.056 4.056 4 C -0.148 4.148 5 C -0.209 4.209 6 C -0.146 4.146 7 C -0.206 4.206 8 C 0.018 3.982 9 N -0.369 5.369 10 C 0.341 3.659 11 O -0.471 6.471 12 C 0.025 3.975 13 H 0.081 0.919 14 C -0.572 4.572 15 H 0.087 0.913 16 C -0.157 4.157 17 N -0.503 5.503 18 Si 0.758 3.242 19 H -0.194 1.194 20 H -0.225 1.225 21 H -0.192 1.192 22 C -0.037 4.037 23 C -0.135 4.135 24 C -0.163 4.163 25 C -0.160 4.160 26 C -0.169 4.169 27 C -0.115 4.115 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.105 0.895 39 H 0.068 0.932 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.235 0.765 46 H 0.063 0.937 47 H 0.117 0.883 48 H 0.148 0.852 49 H 0.157 0.843 50 H 0.146 0.854 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.111 -3.315 5.947 11.374 hybrid contribution -0.041 0.530 -1.415 1.512 sum -9.152 -2.784 4.532 10.585 Atomic orbital electron populations 1.21819 0.93996 1.02071 1.02548 1.21553 0.97382 0.94214 1.01883 1.20749 0.91826 0.97128 0.95877 1.21576 1.01462 0.98689 0.93027 1.21835 1.00335 1.01135 0.97563 1.21551 1.01213 0.98563 0.93258 1.21786 0.99962 1.00975 0.97926 1.21172 0.94236 0.83729 0.99039 1.45628 1.06777 1.07781 1.76720 1.20853 0.81660 0.91645 0.71705 1.90482 1.56462 1.48133 1.51987 1.17989 0.90262 0.91191 0.98050 0.91871 1.20801 1.37476 1.09475 0.89481 0.91281 1.25481 0.94323 0.94930 1.00979 1.70195 1.40339 1.16327 1.23484 0.86013 0.79194 0.79215 0.79754 1.19393 1.22519 1.19160 1.19988 0.96239 0.93988 0.93442 1.21043 0.94690 0.98052 0.99743 1.21212 0.93909 1.00439 1.00760 1.21188 1.00138 0.97607 0.97019 1.21329 0.94268 1.00969 1.00292 1.21183 0.93754 0.99137 0.97452 0.92269 0.92159 0.91520 0.92619 0.91523 0.92712 0.89593 0.91986 0.91567 0.94582 0.89508 0.93248 0.91396 0.93316 0.95487 0.95508 0.93601 0.76514 0.93681 0.88342 0.85243 0.84317 0.85450 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.21 71.98 0.66 -1.73 16 2 C -0.11 -2.41 4.28 30.59 0.13 -2.28 16 3 C -0.06 -1.40 0.11 -52.18 -0.01 -1.41 16 4 C -0.11 -2.40 4.46 30.59 0.14 -2.26 16 5 C -0.15 -3.25 9.21 71.98 0.66 -2.59 16 6 C -0.11 -2.84 4.46 30.60 0.14 -2.71 16 7 C -0.15 -4.43 9.21 71.98 0.66 -3.76 16 8 C 0.14 5.05 3.86 86.38 0.33 5.38 16 9 N -0.72 -28.69 4.86 -463.05 -2.25 -30.94 16 10 C 0.55 26.82 5.28 87.65 0.46 27.28 16 11 O -0.59 -32.85 13.86 -3.04 -0.04 -32.90 16 12 C 0.05 2.23 2.78 -13.03 -0.04 2.19 16 13 H 0.06 2.82 8.14 -2.38 -0.02 2.80 16 14 C -0.53 -26.24 7.11 25.60 0.18 -26.06 16 15 H 0.07 3.26 7.82 -2.91 -0.02 3.23 16 16 C 0.05 2.43 3.90 84.65 0.33 2.76 16 17 N -0.87 -48.57 11.12 21.45 0.24 -48.34 16 18 Si 0.93 41.05 29.54 68.60 2.03 43.07 16 19 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 20 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 22 C -0.04 -1.74 4.63 -19.86 -0.09 -1.83 16 23 C -0.12 -5.43 8.21 22.27 0.18 -5.25 16 24 C -0.15 -5.83 10.05 22.27 0.22 -5.61 16 25 C -0.14 -5.32 10.05 22.27 0.22 -5.10 16 26 C -0.15 -6.15 10.05 22.27 0.22 -5.92 16 27 C -0.10 -4.60 8.46 22.27 0.19 -4.41 16 28 H 0.06 0.95 6.43 -2.39 -0.02 0.94 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.97 6.43 -2.39 -0.02 0.95 16 31 H 0.06 1.30 6.43 -2.38 -0.02 1.29 16 32 H 0.07 1.40 6.43 -2.39 -0.02 1.38 16 33 H 0.05 1.31 6.86 -2.39 -0.02 1.29 16 34 H 0.09 1.50 6.43 -2.38 -0.02 1.49 16 35 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.07 1.25 6.43 -2.39 -0.02 1.24 16 37 H 0.04 0.95 6.43 -2.39 -0.02 0.93 16 38 H 0.09 1.82 6.43 -2.39 -0.02 1.80 16 39 H 0.05 1.48 6.86 -2.39 -0.02 1.46 16 40 H 0.07 1.73 6.43 -2.39 -0.02 1.71 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.03 1.01 6.43 -2.39 -0.02 0.99 16 43 H 0.03 1.13 6.43 -2.39 -0.02 1.11 16 44 H 0.05 1.68 6.43 -2.38 -0.02 1.66 16 45 H 0.40 14.73 6.05 -92.71 -0.56 14.17 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.10 4.64 6.99 -2.91 -0.02 4.62 16 48 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 49 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 50 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 51 H 0.11 5.54 6.05 -2.91 -0.02 5.53 16 Total: -1.00 -63.40 378.83 4.95 -58.46 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: 0.36 Total: 43.96 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 4.61 Total: -33.31 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -2.01 Total: -79.28 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: -0.04 Total: -32.90 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -63.40 4.95 -58.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001517365488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.565 kcal (2) G-P(sol) polarization free energy of solvation -63.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds