Wall clock time and date at job start Tue Mar 31 2020 12:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52992 * 109.47189 * 2 1 4 4 C 1.53004 * 109.47101 * 240.00214 * 2 1 3 5 5 C 1.53001 * 109.47323 * 120.00351 * 2 1 3 6 6 C 1.50702 * 109.47084 * 65.59227 * 5 2 1 7 7 C 1.37978 * 120.07556 * 269.76150 * 6 5 2 8 8 C 1.38330 * 120.14665 * 180.25514 * 7 6 5 9 9 C 1.38393 * 120.28995 * 359.44509 * 8 7 6 10 10 C 1.37925 * 120.14389 * 0.55297 * 9 8 7 11 11 C 1.39554 * 120.07169 * 89.74094 * 6 5 2 12 12 C 1.47847 * 120.14496 * 359.97438 * 11 6 5 13 13 O 1.21542 * 120.00122 * 6.04979 * 12 11 6 14 14 N 1.34778 * 119.99760 * 186.04701 * 12 11 6 15 15 C 1.46504 * 120.00005 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47360 * 180.02562 * 15 14 12 17 17 C 1.52998 * 109.47210 * 300.00345 * 16 15 14 18 18 C 1.52998 * 109.46774 * 60.00270 * 16 15 14 19 19 C 1.50695 * 109.47087 * 180.02562 * 16 15 14 20 20 H 1.08001 * 120.00250 * 359.97438 * 19 16 15 21 21 C 1.37877 * 120.00276 * 180.02562 * 19 16 15 22 22 N 1.31515 * 119.99594 * 359.97438 * 21 19 16 23 23 Si 1.86794 * 120.00620 * 179.97438 * 21 19 16 24 24 H 1.48507 * 109.46821 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47460 * 119.99451 * 23 21 19 26 26 H 1.48503 * 109.47348 * 240.00227 * 23 21 19 27 27 H 1.09006 * 109.47141 * 299.99624 * 1 2 3 28 28 H 1.09001 * 109.47672 * 59.99781 * 1 2 3 29 29 H 1.08998 * 109.47363 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47296 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47618 * 300.00313 * 3 2 1 32 32 H 1.09006 * 109.47293 * 60.00207 * 3 2 1 33 33 H 1.09004 * 109.47179 * 293.21848 * 4 2 1 34 34 H 1.08998 * 109.46998 * 53.21265 * 4 2 1 35 35 H 1.09001 * 109.46926 * 173.21421 * 4 2 1 36 36 H 1.09001 * 109.46905 * 305.59669 * 5 2 1 37 37 H 1.08996 * 109.47542 * 185.59307 * 5 2 1 38 38 H 1.07998 * 119.92815 * 359.97438 * 7 6 5 39 39 H 1.08000 * 119.85937 * 179.70499 * 8 7 6 40 40 H 1.08004 * 119.92460 * 180.27988 * 9 8 7 41 41 H 1.08004 * 120.07529 * 179.74750 * 10 9 8 42 42 H 0.96997 * 120.00410 * 0.02562 * 14 12 11 43 43 H 1.08996 * 109.47132 * 300.00505 * 15 14 12 44 44 H 1.09007 * 109.46643 * 59.99990 * 15 14 12 45 45 H 1.09001 * 109.47574 * 59.99611 * 17 16 15 46 46 H 1.09000 * 109.47206 * 180.02562 * 17 16 15 47 47 H 1.09007 * 109.46896 * 300.00235 * 17 16 15 48 48 H 1.08994 * 109.47435 * 60.00458 * 18 16 15 49 49 H 1.09002 * 109.46771 * 180.02562 * 18 16 15 50 50 H 1.08998 * 109.47528 * 299.99523 * 18 16 15 51 51 H 0.97000 * 120.00166 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 6 1.6539 -2.1765 1.1818 7 6 0.4539 -2.5989 1.7159 8 6 0.1004 -3.9351 1.6596 9 6 0.9414 -4.8548 1.0578 10 6 2.1438 -4.4458 0.5200 11 6 2.5092 -3.0997 0.5787 12 6 3.7961 -2.6540 0.0034 13 8 4.1622 -1.5044 0.1511 14 7 4.5634 -3.5224 -0.6847 15 6 5.8390 -3.0809 -1.2543 16 6 6.5059 -4.2513 -1.9798 17 6 6.7567 -5.3895 -0.9887 18 6 5.5899 -4.7444 -3.1017 19 6 7.8182 -3.7973 -2.5651 20 1 8.1439 -2.7760 -2.4333 21 6 8.6028 -4.6853 -3.2700 22 7 8.2061 -5.9288 -3.4310 23 14 10.2292 -4.1225 -3.9961 24 1 10.4438 -2.6881 -3.6769 25 1 11.3345 -4.9291 -3.4193 26 1 10.2019 -4.3023 -5.4700 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1299 1.4424 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.7791 -1.7780 -1.1907 34 1 1.5808 -0.2823 -2.1351 35 1 3.1232 -0.6172 -1.3121 36 1 1.5971 -0.2686 2.1364 37 1 3.1253 -0.6354 1.3007 38 1 -0.2089 -1.8855 2.1830 39 1 -0.8379 -4.2614 2.0833 40 1 0.6574 -5.8959 1.0131 41 1 2.8011 -5.1651 0.0543 42 1 4.2712 -4.4397 -0.8029 43 1 5.6603 -2.2703 -1.9607 44 1 6.4914 -2.7291 -0.4550 45 1 5.8077 -5.7180 -0.5649 46 1 7.2322 -6.2231 -1.5055 47 1 7.4092 -5.0381 -0.1894 48 1 5.4113 -3.9336 -3.8078 49 1 6.0649 -5.5785 -3.6183 50 1 4.6409 -5.0730 -2.6780 51 1 8.7578 -6.5536 -3.9271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528385981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:16 Heat of formation + Delta-G solvation = -39.548872 kcal Electronic energy + Delta-G solvation = -28048.253190 eV Core-core repulsion = 24525.451597 eV Total energy + Delta-G solvation = -3522.801593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.73466 -39.57619 -38.19023 -37.76636 -35.03180 -33.04117 -32.48897 -31.77947 -28.18485 -28.06365 -27.78551 -27.58687 -27.37598 -26.59674 -24.34536 -22.54578 -21.49912 -20.60416 -19.77543 -18.69807 -17.77423 -16.91363 -16.75781 -16.60889 -16.51037 -15.98549 -15.69078 -15.54558 -15.04430 -14.92204 -14.78251 -14.49213 -14.40368 -13.95377 -13.74261 -13.35611 -13.20229 -13.18067 -13.11813 -12.94962 -12.72294 -12.63411 -12.55725 -12.51766 -12.41168 -12.24066 -12.14564 -12.07953 -11.61272 -11.54167 -11.47773 -11.33679 -11.20123 -10.72420 -10.40703 -10.26140 -9.96670 -9.75777 -9.52224 -8.03085 -6.18670 -0.02663 0.46945 1.40595 1.44829 1.54120 1.99272 2.32082 2.50019 2.94876 3.20623 3.80390 3.82340 3.89932 4.02214 4.06791 4.18152 4.29919 4.42389 4.48373 4.51102 4.58498 4.68531 4.71479 4.74137 4.80474 4.87331 4.94835 4.96162 4.97999 5.03055 5.03221 5.10196 5.11154 5.15302 5.17531 5.19440 5.24295 5.39088 5.41868 5.47961 5.52634 5.53936 5.56689 5.63400 5.65171 5.66590 5.86002 6.04822 6.12882 6.20122 6.42467 6.69739 6.85497 7.36880 7.49092 8.96123 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017889 B = 0.003502 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.810534 B = 7993.351643 C = 9051.209352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C -0.135 4.135 4 C -0.144 4.144 5 C -0.100 4.100 6 C -0.025 4.025 7 C -0.130 4.130 8 C -0.088 4.088 9 C -0.134 4.134 10 C -0.097 4.097 11 C -0.153 4.153 12 C 0.545 3.455 13 O -0.557 6.557 14 N -0.710 5.710 15 C 0.152 3.848 16 C 0.051 3.949 17 C -0.119 4.119 18 C -0.119 4.119 19 C -0.527 4.527 20 H 0.044 0.956 21 C 0.029 3.971 22 N -0.899 5.899 23 Si 0.945 3.055 24 H -0.276 1.276 25 H -0.281 1.281 26 H -0.281 1.281 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.148 0.852 39 H 0.158 0.842 40 H 0.152 0.848 41 H 0.128 0.872 42 H 0.403 0.597 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.034 0.966 46 H 0.063 0.937 47 H 0.018 0.982 48 H 0.017 0.983 49 H 0.063 0.937 50 H 0.033 0.967 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.647 4.156 9.878 22.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.048 4.048 3 C -0.192 4.192 4 C -0.201 4.201 5 C -0.136 4.136 6 C -0.026 4.026 7 C -0.148 4.148 8 C -0.106 4.106 9 C -0.152 4.152 10 C -0.115 4.115 11 C -0.156 4.156 12 C 0.335 3.665 13 O -0.439 6.439 14 N -0.361 5.361 15 C 0.028 3.972 16 C 0.050 3.950 17 C -0.177 4.177 18 C -0.177 4.177 19 C -0.565 4.565 20 H 0.062 0.938 21 C -0.171 4.171 22 N -0.538 5.538 23 Si 0.772 3.228 24 H -0.200 1.200 25 H -0.207 1.207 26 H -0.207 1.207 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.170 0.830 41 H 0.146 0.854 42 H 0.241 0.759 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.082 0.918 47 H 0.037 0.963 48 H 0.036 0.964 49 H 0.082 0.918 50 H 0.052 0.948 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.287 4.785 9.867 22.187 hybrid contribution 1.442 -0.258 -0.847 1.692 sum -17.845 4.528 9.021 20.502 Atomic orbital electron populations 1.21935 0.93475 1.02001 1.02157 1.20265 0.95915 0.94863 0.93789 1.21797 1.00254 0.95137 1.02019 1.22134 1.01119 0.99570 0.97247 1.21220 1.04435 0.90147 0.97836 1.20061 0.93356 0.95416 0.93772 1.21310 0.95655 0.97060 1.00779 1.21720 1.00090 0.92547 0.96270 1.21395 0.93607 1.01465 0.98690 1.21517 0.97806 0.93971 0.98255 1.19811 0.95182 0.95288 1.05275 1.18744 0.84609 0.85015 0.78152 1.90556 1.74141 1.19026 1.60166 1.46123 1.21384 1.14396 1.54234 1.21239 0.82862 0.97623 0.95447 1.18359 0.93273 0.91047 0.92302 1.21661 0.98201 1.00567 0.97289 1.21653 0.96577 1.00646 0.98793 1.21281 1.04629 0.96433 1.34194 0.93770 1.25443 1.00362 0.95058 0.96239 1.69911 1.38293 1.04073 1.41496 0.85713 0.80704 0.78277 0.78148 1.20035 1.20688 1.20720 0.91260 0.92753 0.92506 0.94365 0.92453 0.91436 0.93864 0.93643 0.93434 0.90440 0.88930 0.83430 0.82486 0.83030 0.85369 0.75899 0.94330 0.94295 0.94749 0.91797 0.96321 0.96381 0.91811 0.94812 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.07 71.98 0.58 -1.98 16 2 C -0.05 -1.16 0.79 -52.18 -0.04 -1.21 16 3 C -0.13 -3.11 8.47 71.98 0.61 -2.50 16 4 C -0.14 -4.26 6.85 71.98 0.49 -3.76 16 5 C -0.10 -2.55 4.06 29.85 0.12 -2.42 16 6 C -0.03 -0.62 4.02 -19.61 -0.08 -0.70 16 7 C -0.13 -2.35 7.98 22.23 0.18 -2.17 16 8 C -0.09 -1.34 10.04 22.33 0.22 -1.12 16 9 C -0.13 -2.33 10.03 22.23 0.22 -2.11 16 10 C -0.10 -2.25 9.53 22.52 0.21 -2.04 16 11 C -0.15 -4.31 4.57 -20.09 -0.09 -4.40 16 12 C 0.55 19.12 6.24 86.79 0.54 19.66 16 13 O -0.56 -22.13 10.54 -3.85 -0.04 -22.17 16 14 N -0.71 -25.53 4.91 -465.97 -2.29 -27.82 16 15 C 0.15 6.57 4.50 86.38 0.39 6.96 16 16 C 0.05 2.37 0.50 -52.93 -0.03 2.35 16 17 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 18 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 19 C -0.53 -28.07 8.01 25.60 0.21 -27.86 16 20 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 21 C 0.03 1.52 5.15 84.65 0.44 1.95 16 22 N -0.90 -48.04 9.35 21.45 0.20 -47.83 16 23 Si 0.94 42.83 29.54 68.60 2.03 44.86 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 1.05 6.30 -2.39 -0.02 1.03 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.28 8.14 -2.38 -0.02 1.27 16 33 H 0.04 1.32 5.41 -2.38 -0.01 1.31 16 34 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.71 5.78 -2.39 -0.01 1.70 16 36 H 0.08 1.63 8.08 -2.39 -0.02 1.61 16 37 H 0.09 3.03 5.03 -6.78 -0.03 2.99 16 38 H 0.15 1.94 8.05 -2.91 -0.02 1.91 16 39 H 0.16 1.32 8.06 -2.91 -0.02 1.29 16 40 H 0.15 1.81 8.06 -2.91 -0.02 1.78 16 41 H 0.13 2.80 6.45 -2.91 -0.02 2.78 16 42 H 0.40 13.01 4.23 -92.71 -0.39 12.62 16 43 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 45 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 46 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 47 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 48 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 50 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 51 H 0.26 13.35 8.31 -92.71 -0.77 12.58 16 Total: -1.00 -60.22 379.42 5.53 -54.68 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.50 Total: 29.17 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 5.14 Total: -30.89 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -2.09 Total: -75.65 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.04 Total: -22.17 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -60.22 5.53 -54.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528385981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.136 kcal (2) G-P(sol) polarization free energy of solvation -60.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds