Wall clock time and date at job start Tue Mar 31 2020 12:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47491 * 2 1 4 4 C 1.53005 * 109.47042 * 120.00420 * 2 1 3 5 5 C 1.52999 * 109.47147 * 83.82769 * 4 2 1 6 6 C 1.52994 * 109.47678 * 61.59264 * 5 4 2 7 7 C 1.52997 * 109.46829 * 301.59097 * 5 4 2 8 8 C 1.53004 * 109.46942 * 181.59581 * 5 4 2 9 9 N 1.46503 * 109.46889 * 179.97438 * 8 5 4 10 10 C 1.34774 * 119.99710 * 179.97438 * 9 8 5 11 11 O 1.21280 * 120.00228 * 0.02562 * 10 9 8 12 12 C 1.50700 * 120.00000 * 180.02562 * 10 9 8 13 13 H 1.08992 * 109.47499 * 59.99874 * 12 10 9 14 14 C 1.50699 * 109.47029 * 299.99908 * 12 10 9 15 15 H 1.07997 * 120.00580 * 125.68772 * 14 12 10 16 16 C 1.37879 * 119.99973 * 305.41852 * 14 12 10 17 17 N 1.31518 * 120.00209 * 6.84849 * 16 14 12 18 18 Si 1.86797 * 120.00261 * 186.85649 * 16 14 12 19 19 H 1.48502 * 109.47475 * 89.99573 * 18 16 14 20 20 H 1.48498 * 109.47532 * 210.00094 * 18 16 14 21 21 H 1.48503 * 109.47147 * 329.99500 * 18 16 14 22 22 C 1.50705 * 109.47203 * 180.02562 * 12 10 9 23 23 C 1.38239 * 119.99474 * 311.82282 * 22 12 10 24 24 C 1.38232 * 119.99569 * 179.81199 * 23 22 12 25 25 C 1.38238 * 120.00436 * 0.39997 * 24 23 22 26 26 C 1.38235 * 119.99647 * 359.85639 * 25 24 23 27 27 C 1.38226 * 120.00256 * 132.10377 * 22 12 10 28 28 H 1.08997 * 109.47211 * 303.98835 * 1 2 3 29 29 H 1.09004 * 109.47338 * 63.98983 * 1 2 3 30 30 H 1.09000 * 109.47152 * 183.98558 * 1 2 3 31 31 H 1.09005 * 109.47320 * 239.99826 * 2 1 3 32 32 H 1.08999 * 109.47679 * 184.95501 * 3 2 1 33 33 H 1.09003 * 109.47239 * 304.95851 * 3 2 1 34 34 H 1.09004 * 109.46850 * 64.95268 * 3 2 1 35 35 H 1.08999 * 109.47156 * 323.82277 * 4 2 1 36 36 H 1.09007 * 109.46552 * 203.82166 * 4 2 1 37 37 H 1.08999 * 109.47654 * 181.51713 * 6 5 4 38 38 H 1.09007 * 109.47201 * 301.51939 * 6 5 4 39 39 H 1.09000 * 109.47193 * 61.51833 * 6 5 4 40 40 H 1.09004 * 109.47362 * 314.01693 * 7 5 4 41 41 H 1.09000 * 109.47502 * 74.01947 * 7 5 4 42 42 H 1.09007 * 109.47127 * 194.01743 * 7 5 4 43 43 H 1.08996 * 109.46870 * 59.99775 * 8 5 4 44 44 H 1.09004 * 109.46918 * 299.99519 * 8 5 4 45 45 H 0.96996 * 120.00254 * 0.02562 * 9 8 5 46 46 H 0.97002 * 120.00345 * 179.97438 * 17 16 14 47 47 H 1.08001 * 119.99934 * 0.02562 * 23 22 12 48 48 H 1.07999 * 120.00222 * 180.23397 * 24 23 22 49 49 H 1.07998 * 120.00364 * 179.83180 * 25 24 23 50 50 H 1.07997 * 120.00099 * 179.97438 * 26 25 24 51 51 H 1.07999 * 119.99900 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 2.0637 -2.2296 0.9932 6 6 3.0220 -2.5364 -0.1592 7 6 0.6569 -2.7070 0.6275 8 6 2.5358 -2.9537 2.2557 9 7 2.5580 -4.3980 2.0107 10 6 2.9445 -5.2414 2.9884 11 8 3.2735 -4.8048 4.0710 12 6 2.9679 -6.7270 2.7363 13 1 3.6503 -6.9455 1.9151 14 6 1.5821 -7.1973 2.3765 15 1 1.4194 -7.7492 1.4626 16 6 0.5228 -6.9278 3.2169 17 7 0.6941 -6.1475 4.2616 18 14 -1.1558 -7.6711 2.8718 19 1 -1.2669 -8.9831 3.5585 20 1 -2.2142 -6.7584 3.3739 21 1 -1.3210 -7.8628 1.4085 22 6 3.4328 -7.4402 3.9798 23 6 4.5646 -7.0052 4.6437 24 6 4.9889 -7.6571 5.7865 25 6 4.2862 -8.7490 6.2607 26 6 3.1574 -9.1872 5.5938 27 6 2.7309 -8.5329 4.4531 28 1 -0.3633 0.5745 0.8521 29 1 -0.3634 0.4507 -0.9236 30 1 -0.3633 -1.0252 0.0714 31 1 1.8933 -0.5139 -0.8900 32 1 3.1264 1.4437 -0.0888 33 1 1.6060 1.9813 -0.8423 34 1 1.7509 1.9300 0.9311 35 1 1.3790 -0.5056 2.0887 36 1 3.0474 -0.3764 1.4820 37 1 3.0186 -3.6078 -0.3594 38 1 2.7009 -1.9990 -1.0517 39 1 4.0294 -2.2208 0.1121 40 1 -0.0649 -2.2760 1.3214 41 1 0.4183 -2.3907 -0.3879 42 1 0.6149 -3.7945 0.6886 43 1 1.8531 -2.7352 3.0767 44 1 3.5382 -2.6136 2.5162 45 1 2.2953 -4.7472 1.1448 46 1 -0.0512 -5.9576 4.8526 47 1 5.1153 -6.1540 4.2715 48 1 5.8709 -7.3150 6.3074 49 1 4.6192 -9.2599 7.1520 50 1 2.6086 -10.0405 5.9640 51 1 1.8491 -8.8753 3.9321 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001534028234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:57 Heat of formation + Delta-G solvation = -46.977250 kcal Electronic energy + Delta-G solvation = -27887.483819 eV Core-core repulsion = 24364.360107 eV Total energy + Delta-G solvation = -3523.123712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.85141 -39.89642 -38.76652 -35.79733 -35.43824 -33.17535 -32.62641 -31.38485 -29.29380 -29.04625 -27.87325 -27.18807 -26.72776 -25.43436 -22.97029 -22.28491 -21.12846 -20.86594 -19.67816 -18.62964 -17.58678 -17.03828 -16.76887 -16.52421 -16.19097 -15.87419 -15.58808 -15.36051 -15.06431 -14.92917 -14.44398 -14.26487 -14.07227 -14.03219 -13.88733 -13.66191 -13.62058 -13.09973 -13.02342 -12.87958 -12.77888 -12.70669 -12.51898 -12.44670 -12.34889 -12.24824 -11.77655 -11.73222 -11.64587 -11.44743 -11.39368 -11.16930 -11.10682 -10.92677 -10.65281 -10.06972 -9.52083 -9.40608 -9.11651 -8.07945 -6.24555 0.85393 0.89942 1.40638 1.45409 1.51700 2.37074 2.52150 2.89698 3.20744 3.34746 3.74102 3.88729 3.92457 4.20715 4.25392 4.31900 4.33145 4.34627 4.48661 4.59162 4.63356 4.70626 4.71676 4.80741 4.84508 4.86780 4.91932 4.96388 4.98637 4.99831 5.05951 5.11224 5.11977 5.14986 5.16829 5.21044 5.27629 5.36458 5.43982 5.46769 5.52236 5.52952 5.60149 5.68639 5.71279 5.86972 5.92482 5.97422 6.09289 6.41300 6.51167 6.77938 7.19084 7.43759 8.04683 8.92596 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015613 B = 0.003940 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.976680 B = 7104.775441 C = 8340.456084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.099 4.099 5 C -0.062 4.062 6 C -0.138 4.138 7 C -0.142 4.142 8 C 0.144 3.856 9 N -0.720 5.720 10 C 0.552 3.448 11 O -0.590 6.590 12 C 0.045 3.955 13 H 0.066 0.934 14 C -0.534 4.534 15 H 0.071 0.929 16 C 0.046 3.954 17 N -0.873 5.873 18 Si 0.934 3.066 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.259 1.259 22 C -0.038 4.038 23 C -0.118 4.118 24 C -0.145 4.145 25 C -0.142 4.142 26 C -0.150 4.150 27 C -0.098 4.098 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.022 0.978 44 H 0.045 0.955 45 H 0.401 0.599 46 H 0.255 0.745 47 H 0.099 0.901 48 H 0.131 0.869 49 H 0.140 0.860 50 H 0.128 0.872 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 7.785 -9.151 12.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.137 4.137 5 C -0.062 4.062 6 C -0.195 4.195 7 C -0.199 4.199 8 C 0.020 3.980 9 N -0.372 5.372 10 C 0.341 3.659 11 O -0.471 6.471 12 C 0.024 3.976 13 H 0.084 0.916 14 C -0.572 4.572 15 H 0.089 0.911 16 C -0.159 4.159 17 N -0.508 5.508 18 Si 0.761 3.239 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.183 1.183 22 C -0.039 4.039 23 C -0.136 4.136 24 C -0.163 4.163 25 C -0.159 4.159 26 C -0.168 4.168 27 C -0.116 4.116 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.063 0.937 45 H 0.237 0.763 46 H 0.064 0.936 47 H 0.117 0.883 48 H 0.149 0.851 49 H 0.158 0.842 50 H 0.146 0.854 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.682 8.200 -8.223 11.918 hybrid contribution -1.394 -0.348 0.177 1.448 sum 1.288 7.852 -8.045 11.315 Atomic orbital electron populations 1.22350 0.95516 1.03229 1.01473 1.21166 0.95823 0.96197 0.97922 1.21848 1.01041 0.95637 1.01709 1.21645 1.01310 0.92443 0.98283 1.20691 0.96197 0.95400 0.93929 1.21921 0.98456 1.01693 0.97477 1.22132 0.95349 1.00473 1.01929 1.21089 0.98904 0.81032 0.97018 1.45672 1.69748 1.05690 1.16128 1.20881 0.72928 0.89430 0.82634 1.90480 1.51150 1.79603 1.25819 1.18009 0.97644 0.88890 0.93055 0.91625 1.20869 0.90630 1.37804 1.07857 0.91095 1.25517 1.01299 0.94457 0.94605 1.70192 1.31766 1.34109 1.14714 0.85912 0.80599 0.78310 0.79097 1.20343 1.22297 1.18312 1.20015 0.92655 0.94215 0.97040 1.21043 0.97325 0.98284 0.96956 1.21220 1.01066 0.97062 0.96910 1.21203 0.96257 0.97826 1.00652 1.21338 0.97963 1.01064 0.96454 1.21205 0.98597 0.95686 0.96094 0.93621 0.92209 0.91034 0.89844 0.92444 0.92021 0.93287 0.93034 0.91666 0.92907 0.90163 0.92578 0.93403 0.89735 0.93992 0.95961 0.93693 0.76253 0.93600 0.88296 0.85135 0.84246 0.85441 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.63 71.98 0.62 -2.43 16 2 C -0.09 -1.65 2.48 -10.80 -0.03 -1.68 16 3 C -0.15 -2.27 9.06 71.98 0.65 -1.62 16 4 C -0.10 -2.21 3.99 30.60 0.12 -2.09 16 5 C -0.06 -1.59 0.56 -52.18 -0.03 -1.62 16 6 C -0.14 -3.00 8.02 71.98 0.58 -2.43 16 7 C -0.14 -3.73 6.70 71.98 0.48 -3.25 16 8 C 0.14 5.18 4.56 86.38 0.39 5.58 16 9 N -0.72 -29.03 4.72 -463.05 -2.19 -31.22 16 10 C 0.55 26.97 5.21 87.66 0.46 27.43 16 11 O -0.59 -33.04 13.94 -3.03 -0.04 -33.08 16 12 C 0.05 2.18 2.77 -13.03 -0.04 2.14 16 13 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 14 C -0.53 -26.13 7.10 25.60 0.18 -25.94 16 15 H 0.07 3.33 7.82 -2.91 -0.02 3.31 16 16 C 0.05 2.32 3.88 84.65 0.33 2.65 16 17 N -0.87 -48.92 11.12 21.45 0.24 -48.68 16 18 Si 0.93 40.82 29.54 68.60 2.03 42.85 16 19 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 20 H -0.30 -13.34 7.11 99.48 0.71 -12.64 16 21 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 22 C -0.04 -1.87 4.67 -19.87 -0.09 -1.96 16 23 C -0.12 -5.44 8.22 22.27 0.18 -5.25 16 24 C -0.14 -5.77 10.05 22.27 0.22 -5.54 16 25 C -0.14 -5.29 10.05 22.27 0.22 -5.06 16 26 C -0.15 -6.11 10.05 22.27 0.22 -5.88 16 27 C -0.10 -4.62 8.50 22.27 0.19 -4.43 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.39 3.83 -2.39 -0.01 1.39 16 31 H 0.08 1.37 5.66 -2.38 -0.01 1.36 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 35 H 0.05 1.28 7.93 -2.39 -0.02 1.26 16 36 H 0.06 1.42 7.93 -2.38 -0.02 1.40 16 37 H 0.05 1.21 6.91 -2.39 -0.02 1.20 16 38 H 0.08 1.38 6.02 -2.38 -0.01 1.37 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.05 1.33 7.19 -2.39 -0.02 1.32 16 41 H 0.08 1.77 6.31 -2.39 -0.02 1.75 16 42 H 0.04 1.29 6.58 -2.38 -0.02 1.28 16 43 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.40 14.72 6.10 -92.71 -0.57 14.15 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.10 4.62 7.09 -2.91 -0.02 4.59 16 48 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 49 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 50 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 51 H 0.11 5.56 6.00 -2.91 -0.02 5.54 16 Total: -1.00 -63.54 386.27 5.05 -58.49 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: 0.34 Total: 43.03 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: 4.68 Total: -31.39 kcal Atomic # 7 Polarization: -77.95 SS G_CDS: -1.95 Total: -79.90 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -0.04 Total: -33.08 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -63.54 5.05 -58.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001534028234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.511 kcal (2) G-P(sol) polarization free energy of solvation -63.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds