Wall clock time and date at job start Tue Mar 31 2020 11:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38252 * 119.99787 * 2 1 4 4 C 1.38212 * 120.00133 * 179.97438 * 3 2 1 5 5 C 1.38268 * 119.99523 * 359.97438 * 4 3 2 6 6 C 1.38206 * 120.00165 * 0.02562 * 5 4 3 7 7 C 1.38215 * 119.99860 * 179.72119 * 2 1 3 8 8 C 1.50695 * 120.00135 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.47492 * 357.15025 * 8 7 2 10 10 C 1.52992 * 109.47597 * 237.14704 * 8 7 2 11 11 C 1.50703 * 109.46794 * 117.14674 * 8 7 2 12 12 O 1.21275 * 120.00077 * 15.89859 * 11 8 7 13 13 N 1.34780 * 120.00071 * 195.89771 * 11 8 7 14 14 C 1.46504 * 119.99935 * 3.92919 * 13 11 8 15 15 C 1.50707 * 109.46917 * 84.38903 * 14 13 11 16 16 H 1.07999 * 119.99692 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99704 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00413 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99712 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47371 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47192 * 120.00001 * 19 17 15 22 22 H 1.48503 * 109.47467 * 240.00085 * 19 17 15 23 23 C 1.46492 * 120.00218 * 183.93434 * 13 11 8 24 24 C 1.52995 * 109.47651 * 87.59795 * 23 13 11 25 25 C 1.53004 * 109.46919 * 60.92586 * 24 23 13 26 26 C 1.52998 * 109.47335 * 180.92363 * 24 23 13 27 27 C 1.53002 * 109.46863 * 300.92828 * 24 23 13 28 28 H 1.08996 * 109.47061 * 96.48250 * 1 2 3 29 29 H 1.08997 * 109.47590 * 336.48091 * 1 2 3 30 30 H 1.09001 * 109.46981 * 216.48406 * 1 2 3 31 31 H 1.08002 * 120.00467 * 359.97438 * 3 2 1 32 32 H 1.07991 * 120.00319 * 180.02562 * 4 3 2 33 33 H 1.07995 * 119.99457 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.00340 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47134 * 56.07349 * 10 8 7 36 36 H 1.08998 * 109.47631 * 176.07567 * 10 8 7 37 37 H 1.09005 * 109.47288 * 296.08026 * 10 8 7 38 38 H 1.08996 * 109.47524 * 204.39151 * 14 13 11 39 39 H 1.09006 * 109.47326 * 324.39277 * 14 13 11 40 40 H 0.97008 * 120.00383 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.47414 * 207.60175 * 23 13 11 42 42 H 1.09001 * 109.47035 * 327.59494 * 23 13 11 43 43 H 1.08990 * 109.47294 * 60.00166 * 25 24 23 44 44 H 1.09002 * 109.46804 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.46873 * 299.99740 * 25 24 23 46 46 H 1.09000 * 109.46760 * 60.00132 * 26 24 23 47 47 H 1.09002 * 109.46996 * 179.97438 * 26 24 23 48 48 H 1.08996 * 109.47657 * 300.00006 * 26 24 23 49 49 H 1.08995 * 109.46979 * 65.97942 * 27 24 23 50 50 H 1.09004 * 109.46548 * 185.97509 * 27 24 23 51 51 H 1.09002 * 109.46920 * 305.97385 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0128 9 1 0.3741 -2.3033 0.0633 10 6 1.8677 -3.3288 1.2285 11 6 1.7544 -3.2676 -1.2478 12 8 2.7099 -2.9565 -1.9268 13 7 0.9696 -4.2979 -1.6206 14 6 -0.2330 -4.6195 -0.8483 15 6 -1.3750 -3.7528 -1.3128 16 1 -1.2205 -3.0346 -2.1044 17 6 -2.6173 -3.8775 -0.7279 18 7 -2.8056 -4.7524 0.2358 19 14 -4.0330 -2.8036 -1.3041 20 1 -3.5643 -1.9086 -2.3925 21 1 -5.1326 -3.6638 -1.8104 22 1 -4.5278 -1.9851 -0.1681 23 6 1.3192 -5.0964 -2.7981 24 6 2.2615 -6.2287 -2.3851 25 6 1.5587 -7.1325 -1.3702 26 6 2.6449 -7.0487 -3.6186 27 6 3.5233 -5.6373 -1.7534 28 1 -0.3633 -0.1160 -1.0211 29 1 -0.3634 0.9422 0.4101 30 1 -0.3633 -0.8263 0.6111 31 1 1.6583 2.1327 -0.0004 32 1 4.1203 2.1326 0.0010 33 1 5.3516 0.0000 0.0024 34 1 4.1206 -2.1323 0.0029 35 1 1.7082 -2.7474 2.1367 36 1 1.2730 -4.2413 1.2722 37 1 2.9233 -3.5868 1.1430 38 1 -0.4898 -5.6685 -0.9956 39 1 -0.0451 -4.4366 0.2098 40 1 -3.6795 -4.8399 0.6476 41 1 0.4131 -5.5182 -3.2332 42 1 1.8140 -4.4619 -3.5335 43 1 0.6598 -7.5538 -1.8201 44 1 2.2302 -7.9390 -1.0756 45 1 1.2856 -6.5484 -0.4914 46 1 3.1456 -6.4047 -4.3416 47 1 3.3166 -7.8551 -3.3244 48 1 1.7460 -7.4700 -4.0686 49 1 3.2635 -5.1429 -0.8174 50 1 4.2392 -6.4353 -1.5563 51 1 3.9662 -4.9125 -2.4366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001537484853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:21 Heat of formation + Delta-G solvation = -35.931793 kcal Electronic energy + Delta-G solvation = -28833.763783 eV Core-core repulsion = 25311.119038 eV Total energy + Delta-G solvation = -3522.644745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.10007 -38.73566 -36.61356 -34.50204 -33.50817 -32.34949 -32.21110 -29.21158 -27.67011 -26.94234 -26.75582 -26.43291 -25.77286 -24.06762 -22.79048 -21.50155 -20.56797 -18.75770 -17.84616 -16.78644 -16.38322 -15.97540 -15.34896 -15.01776 -14.81755 -14.55541 -14.21549 -13.92295 -13.61635 -13.36347 -13.24081 -13.05734 -12.71658 -12.58978 -12.39091 -12.24029 -12.00672 -11.91086 -11.83697 -11.65706 -11.54111 -11.31525 -11.25376 -11.15802 -10.99191 -10.94044 -10.82455 -10.52344 -10.48517 -10.36580 -10.22187 -10.17137 -10.00260 -9.63944 -8.85479 -8.54853 -8.39006 -8.16436 -7.60173 -6.19965 -4.26887 1.70855 1.79254 3.18935 3.28562 3.32232 3.50403 3.93159 4.21441 4.34522 5.07985 5.11012 5.15297 5.20327 5.21414 5.28687 5.30549 5.38080 5.51793 5.65120 5.70345 5.78360 5.87321 5.89143 5.91539 5.94316 6.01458 6.10706 6.12496 6.15357 6.20190 6.24000 6.24322 6.32861 6.35125 6.41724 6.44920 6.51094 6.57318 6.58586 6.60767 6.71502 6.82748 6.83150 6.87543 6.89921 7.13811 7.23569 7.39482 7.60633 7.76911 8.07161 8.40283 8.80727 9.11791 9.41333 10.86093 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.006877 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.920504 B = 4070.855645 C = 6564.584124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.075 4.075 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.136 4.136 6 C -0.076 4.076 7 C -0.058 4.058 8 C -0.082 4.082 9 H 0.125 0.875 10 C -0.137 4.137 11 C 0.528 3.472 12 O -0.565 6.565 13 N -0.591 5.591 14 C 0.229 3.771 15 C -0.537 4.537 16 H 0.060 0.940 17 C 0.067 3.933 18 N -0.890 5.890 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.281 1.281 23 C 0.131 3.869 24 C -0.085 4.085 25 C -0.139 4.139 26 C -0.136 4.136 27 C -0.129 4.129 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.264 0.736 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.043 0.957 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.051 0.949 50 H 0.039 0.961 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.456 2.510 0.565 9.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.075 4.075 3 C -0.148 4.148 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.094 4.094 7 C -0.058 4.058 8 C -0.103 4.103 9 H 0.143 0.857 10 C -0.194 4.194 11 C 0.316 3.684 12 O -0.445 6.445 13 N -0.321 5.321 14 C 0.110 3.890 15 C -0.575 4.575 16 H 0.078 0.922 17 C -0.136 4.136 18 N -0.528 5.528 19 Si 0.717 3.283 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.207 1.207 23 C 0.007 3.993 24 C -0.086 4.086 25 C -0.196 4.196 26 C -0.193 4.193 27 C -0.186 4.186 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.070 0.930 50 H 0.058 0.942 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.775 2.574 0.338 10.114 hybrid contribution -1.046 0.502 -0.318 1.203 sum 8.729 3.076 0.020 9.256 Atomic orbital electron populations 1.20893 0.91076 1.02564 1.03195 1.19826 0.96135 0.92543 0.98980 1.20896 0.94164 0.97073 1.02678 1.20993 0.94265 0.97618 1.01381 1.21015 0.99323 0.92660 1.02458 1.20908 0.93625 0.97740 0.97152 1.19379 0.93506 0.93373 0.99579 1.20392 1.03400 0.92188 0.94283 0.85749 1.21780 1.01124 1.00328 0.96158 1.20108 0.82010 0.79907 0.86328 1.90583 1.30308 1.68152 1.55469 1.48090 1.25938 1.29648 1.28381 1.19645 0.80437 0.97366 0.91594 1.21573 0.94457 1.21278 1.20219 0.92163 1.24897 0.98520 0.95371 0.94784 1.69920 1.23738 1.34534 1.24615 0.86572 0.82313 0.80570 0.78891 1.19610 1.20892 1.20733 1.21334 0.97916 0.91730 0.88336 1.20964 0.96135 0.95747 0.95743 1.21914 0.99555 0.98630 0.99484 1.21782 1.00958 0.99325 0.97280 1.21830 0.96034 0.99631 1.01150 0.90851 0.92125 0.90313 0.86629 0.86844 0.86796 0.86345 0.91993 0.90821 0.92925 0.94113 0.94013 0.92604 0.90793 0.91253 0.92753 0.93750 0.91749 0.92883 0.92988 0.92767 0.93017 0.94229 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 9.23 36.01 0.33 -1.60 16 2 C -0.07 -1.25 5.88 -104.62 -0.62 -1.86 16 3 C -0.13 -1.92 9.68 -39.59 -0.38 -2.30 16 4 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 5 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 6 C -0.08 -1.27 7.92 -39.59 -0.31 -1.58 16 7 C -0.06 -1.02 4.53 -104.62 -0.47 -1.50 16 8 C -0.08 -1.52 1.87 -92.93 -0.17 -1.69 16 9 H 0.12 2.52 4.16 -51.93 -0.22 2.30 16 10 C -0.14 -2.24 8.66 37.15 0.32 -1.91 16 11 C 0.53 10.65 5.09 -10.98 -0.06 10.59 16 12 O -0.56 -12.15 12.50 5.56 0.07 -12.08 16 13 N -0.59 -11.86 2.01 -175.06 -0.35 -12.21 16 14 C 0.23 5.13 3.58 -5.19 -0.02 5.11 16 15 C -0.54 -13.38 8.59 -34.44 -0.30 -13.67 16 16 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 17 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -23.57 13.29 55.43 0.74 -22.83 16 19 Si 0.89 20.02 29.54 -169.99 -5.02 15.00 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 23 C 0.13 2.38 4.57 -4.05 -0.02 2.36 16 24 C -0.08 -1.32 0.84 -154.51 -0.13 -1.45 16 25 C -0.14 -2.16 7.34 37.16 0.27 -1.88 16 26 C -0.14 -1.77 8.47 37.16 0.31 -1.46 16 27 C -0.13 -2.05 7.03 37.16 0.26 -1.79 16 28 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.06 0.81 8.04 -51.93 -0.42 0.40 16 30 H 0.08 1.33 6.41 -51.93 -0.33 0.99 16 31 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 33 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.12 1.97 7.19 -52.49 -0.38 1.59 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.26 6.03 -51.93 -0.31 0.95 16 37 H 0.05 0.80 7.39 -51.93 -0.38 0.42 16 38 H 0.04 0.96 6.59 -51.93 -0.34 0.62 16 39 H 0.04 0.96 4.73 -51.93 -0.25 0.71 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16 42 H 0.07 1.31 7.44 -51.93 -0.39 0.92 16 43 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 1.11 6.23 -51.93 -0.32 0.79 16 46 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.05 0.89 6.56 -51.93 -0.34 0.55 16 50 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.06 1.07 7.27 -51.93 -0.38 0.69 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -27.21 389.02 -9.24 -36.45 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -8.67 Total: 7.36 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -1.87 Total: -17.55 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.38 Total: -35.05 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -27.21 -9.24 -36.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537484853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.519 kcal (2) G-P(sol) polarization free energy of solvation -27.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds