Wall clock time and date at job start Tue Mar 31 2020 11:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38252 * 119.99787 * 2 1 4 4 C 1.38212 * 120.00133 * 179.97438 * 3 2 1 5 5 C 1.38268 * 119.99523 * 359.97438 * 4 3 2 6 6 C 1.38206 * 120.00165 * 0.02562 * 5 4 3 7 7 C 1.38215 * 119.99860 * 179.72119 * 2 1 3 8 8 C 1.50695 * 120.00135 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.47492 * 357.15025 * 8 7 2 10 10 C 1.52992 * 109.47597 * 237.14704 * 8 7 2 11 11 C 1.50703 * 109.46794 * 117.14674 * 8 7 2 12 12 O 1.21275 * 120.00077 * 15.89859 * 11 8 7 13 13 N 1.34780 * 120.00071 * 195.89771 * 11 8 7 14 14 C 1.46504 * 119.99935 * 3.92919 * 13 11 8 15 15 C 1.50707 * 109.46917 * 84.38903 * 14 13 11 16 16 H 1.07999 * 119.99692 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99704 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00413 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99712 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47371 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47192 * 120.00001 * 19 17 15 22 22 H 1.48503 * 109.47467 * 240.00085 * 19 17 15 23 23 C 1.46492 * 120.00218 * 183.93434 * 13 11 8 24 24 C 1.52995 * 109.47651 * 87.59795 * 23 13 11 25 25 C 1.53004 * 109.46919 * 60.92586 * 24 23 13 26 26 C 1.52998 * 109.47335 * 180.92363 * 24 23 13 27 27 C 1.53002 * 109.46863 * 300.92828 * 24 23 13 28 28 H 1.08996 * 109.47061 * 96.48250 * 1 2 3 29 29 H 1.08997 * 109.47590 * 336.48091 * 1 2 3 30 30 H 1.09001 * 109.46981 * 216.48406 * 1 2 3 31 31 H 1.08002 * 120.00467 * 359.97438 * 3 2 1 32 32 H 1.07991 * 120.00319 * 180.02562 * 4 3 2 33 33 H 1.07995 * 119.99457 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.00340 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47134 * 56.07349 * 10 8 7 36 36 H 1.08998 * 109.47631 * 176.07567 * 10 8 7 37 37 H 1.09005 * 109.47288 * 296.08026 * 10 8 7 38 38 H 1.08996 * 109.47524 * 204.39151 * 14 13 11 39 39 H 1.09006 * 109.47326 * 324.39277 * 14 13 11 40 40 H 0.97008 * 120.00383 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.47414 * 207.60175 * 23 13 11 42 42 H 1.09001 * 109.47035 * 327.59494 * 23 13 11 43 43 H 1.08990 * 109.47294 * 60.00166 * 25 24 23 44 44 H 1.09002 * 109.46804 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.46873 * 299.99740 * 25 24 23 46 46 H 1.09000 * 109.46760 * 60.00132 * 26 24 23 47 47 H 1.09002 * 109.46996 * 179.97438 * 26 24 23 48 48 H 1.08996 * 109.47657 * 300.00006 * 26 24 23 49 49 H 1.08995 * 109.46979 * 65.97942 * 27 24 23 50 50 H 1.09004 * 109.46548 * 185.97509 * 27 24 23 51 51 H 1.09002 * 109.46920 * 305.97385 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1969 0.0016 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0128 9 1 0.3741 -2.3033 0.0633 10 6 1.8677 -3.3288 1.2285 11 6 1.7544 -3.2676 -1.2478 12 8 2.7099 -2.9565 -1.9268 13 7 0.9696 -4.2979 -1.6206 14 6 -0.2330 -4.6195 -0.8483 15 6 -1.3750 -3.7528 -1.3128 16 1 -1.2205 -3.0346 -2.1044 17 6 -2.6173 -3.8775 -0.7279 18 7 -2.8056 -4.7524 0.2358 19 14 -4.0330 -2.8036 -1.3041 20 1 -3.5643 -1.9086 -2.3925 21 1 -5.1326 -3.6638 -1.8104 22 1 -4.5278 -1.9851 -0.1681 23 6 1.3192 -5.0964 -2.7981 24 6 2.2615 -6.2287 -2.3851 25 6 1.5587 -7.1325 -1.3702 26 6 2.6449 -7.0487 -3.6186 27 6 3.5233 -5.6373 -1.7534 28 1 -0.3633 -0.1160 -1.0211 29 1 -0.3634 0.9422 0.4101 30 1 -0.3633 -0.8263 0.6111 31 1 1.6583 2.1327 -0.0004 32 1 4.1203 2.1326 0.0010 33 1 5.3516 0.0000 0.0024 34 1 4.1206 -2.1323 0.0029 35 1 1.7082 -2.7474 2.1367 36 1 1.2730 -4.2413 1.2722 37 1 2.9233 -3.5868 1.1430 38 1 -0.4898 -5.6685 -0.9956 39 1 -0.0451 -4.4366 0.2098 40 1 -3.6795 -4.8399 0.6476 41 1 0.4131 -5.5182 -3.2332 42 1 1.8140 -4.4619 -3.5335 43 1 0.6598 -7.5538 -1.8201 44 1 2.2302 -7.9390 -1.0756 45 1 1.2856 -6.5484 -0.4914 46 1 3.1456 -6.4047 -4.3416 47 1 3.3166 -7.8551 -3.3244 48 1 1.7460 -7.4700 -4.0686 49 1 3.2635 -5.1429 -0.8174 50 1 4.2392 -6.4353 -1.5563 51 1 3.9662 -4.9125 -2.4366 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537484853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:20 Heat of formation + Delta-G solvation = -46.251733 kcal Electronic energy + Delta-G solvation = -28834.211289 eV Core-core repulsion = 25311.119038 eV Total energy + Delta-G solvation = -3523.092251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.57221 -40.04813 -38.01492 -36.18555 -34.90381 -34.19473 -33.45312 -30.46611 -29.44747 -28.12848 -28.09204 -27.67962 -27.29128 -25.55634 -24.49857 -22.80022 -21.83784 -20.10811 -19.36140 -18.66659 -17.90413 -17.40502 -16.77988 -16.49481 -16.37541 -16.07863 -15.54707 -15.24275 -14.93078 -14.73733 -14.62603 -14.44453 -14.20478 -14.00250 -13.91831 -13.63620 -13.39187 -13.20760 -13.19151 -13.01104 -12.91968 -12.81287 -12.68511 -12.54107 -12.52608 -12.43389 -12.37413 -12.02728 -11.97291 -11.75377 -11.60640 -11.50641 -11.49152 -11.41196 -10.62453 -10.35406 -9.59221 -9.40868 -9.28824 -8.17385 -6.30798 0.49924 0.59400 1.37698 1.42367 1.51522 1.89224 2.35116 2.49314 2.96994 3.12100 3.74455 3.79070 3.91455 3.95147 4.06868 4.09809 4.12888 4.26292 4.34930 4.42723 4.49141 4.58021 4.61011 4.67372 4.74595 4.77477 4.81878 4.84497 4.86580 4.89749 4.94745 4.99951 5.00313 5.03195 5.06891 5.09875 5.11277 5.24024 5.26047 5.31777 5.35053 5.40212 5.52373 5.53918 5.65292 5.68103 5.71830 5.87563 5.96817 6.13577 6.21593 6.63723 6.89313 7.36987 7.51932 8.87182 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.006877 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.920504 B = 4070.855645 C = 6564.584124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.131 4.131 4 C -0.119 4.119 5 C -0.137 4.137 6 C -0.091 4.091 7 C -0.081 4.081 8 C -0.078 4.078 9 H 0.103 0.897 10 C -0.128 4.128 11 C 0.526 3.474 12 O -0.579 6.579 13 N -0.592 5.592 14 C 0.248 3.752 15 C -0.543 4.543 16 H 0.044 0.956 17 C 0.030 3.970 18 N -0.915 5.915 19 Si 0.943 3.057 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.274 1.274 23 C 0.127 3.873 24 C -0.080 4.080 25 C -0.133 4.133 26 C -0.130 4.130 27 C -0.120 4.120 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.036 0.964 40 H 0.267 0.733 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.040 0.960 46 H 0.054 0.946 47 H 0.071 0.929 48 H 0.059 0.941 49 H 0.031 0.969 50 H 0.062 0.938 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.553 3.513 0.523 11.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.137 4.137 5 C -0.155 4.155 6 C -0.110 4.110 7 C -0.081 4.081 8 C -0.099 4.099 9 H 0.121 0.879 10 C -0.185 4.185 11 C 0.315 3.685 12 O -0.461 6.461 13 N -0.322 5.322 14 C 0.127 3.873 15 C -0.581 4.581 16 H 0.063 0.937 17 C -0.171 4.171 18 N -0.554 5.554 19 Si 0.769 3.231 20 H -0.199 1.199 21 H -0.206 1.206 22 H -0.200 1.200 23 C 0.004 3.996 24 C -0.082 4.082 25 C -0.190 4.190 26 C -0.187 4.187 27 C -0.177 4.177 28 H 0.074 0.926 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.167 0.833 33 H 0.158 0.842 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.078 0.922 49 H 0.050 0.950 50 H 0.081 0.919 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.877 3.571 0.289 11.452 hybrid contribution -1.334 0.230 -0.324 1.392 sum 9.543 3.802 -0.035 10.273 Atomic orbital electron populations 1.20832 0.91232 1.03275 1.01923 1.20004 0.96331 0.93164 1.00045 1.21237 0.94902 0.97207 1.01487 1.21416 0.94079 0.98751 0.99475 1.21359 1.00751 0.92159 1.01257 1.20951 0.93269 0.98519 0.98213 1.19420 0.94128 0.93131 1.01431 1.20308 1.02303 0.93161 0.94096 0.87915 1.21705 1.01270 0.99586 0.95955 1.20416 0.81647 0.79694 0.86721 1.90558 1.30894 1.68547 1.56094 1.48062 1.25327 1.30102 1.28676 1.19283 0.80600 0.95973 0.91428 1.21694 0.95546 1.21165 1.19723 0.93731 1.25481 1.00433 0.96335 0.94848 1.69993 1.24357 1.35639 1.25434 0.85737 0.79738 0.79170 0.78496 1.19863 1.20578 1.19957 1.21468 0.98262 0.92322 0.87583 1.20933 0.95230 0.94989 0.97002 1.21841 0.99903 0.98842 0.98424 1.21736 1.01688 0.99419 0.95906 1.21721 0.96475 0.99807 0.99709 0.92589 0.89489 0.92007 0.84056 0.83306 0.84221 0.87141 0.90670 0.92114 0.92064 0.95365 0.94636 0.92380 0.91399 0.92218 0.93163 0.91465 0.94080 0.92644 0.91039 0.92167 0.94963 0.91915 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.75 9.23 71.24 0.66 -3.09 16 2 C -0.10 -3.15 5.88 -19.87 -0.12 -3.26 16 3 C -0.13 -3.54 9.68 22.27 0.22 -3.33 16 4 C -0.12 -2.94 10.05 22.27 0.22 -2.72 16 5 C -0.14 -3.73 10.05 22.27 0.22 -3.51 16 6 C -0.09 -3.01 7.92 22.27 0.18 -2.84 16 7 C -0.08 -2.89 4.53 -19.87 -0.09 -2.98 16 8 C -0.08 -2.99 1.87 -12.29 -0.02 -3.02 16 9 H 0.10 4.39 4.16 -2.39 -0.01 4.38 16 10 C -0.13 -4.33 8.66 71.98 0.62 -3.71 16 11 C 0.53 22.01 5.09 87.66 0.45 22.45 16 12 O -0.58 -25.62 12.50 -3.02 -0.04 -25.65 16 13 N -0.59 -24.76 2.01 -826.14 -1.66 -26.42 16 14 C 0.25 11.56 3.58 85.63 0.31 11.86 16 15 C -0.54 -27.94 8.59 25.60 0.22 -27.72 16 16 H 0.04 2.40 7.81 -2.91 -0.02 2.37 16 17 C 0.03 1.54 5.46 84.65 0.46 2.00 16 18 N -0.91 -49.23 13.29 21.44 0.28 -48.94 16 19 Si 0.94 41.48 29.54 68.60 2.03 43.50 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 C 0.13 4.74 4.57 86.38 0.39 5.13 16 24 C -0.08 -2.47 0.84 -52.18 -0.04 -2.52 16 25 C -0.13 -4.09 7.34 71.98 0.53 -3.56 16 26 C -0.13 -3.18 8.47 71.98 0.61 -2.57 16 27 C -0.12 -3.76 7.03 71.98 0.51 -3.25 16 28 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 2.25 8.04 -2.39 -0.02 2.23 16 30 H 0.06 2.17 6.41 -2.39 -0.02 2.15 16 31 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 32 H 0.15 2.60 8.06 -2.92 -0.02 2.58 16 33 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 34 H 0.11 3.71 7.19 -2.91 -0.02 3.69 16 35 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.06 2.18 6.03 -2.39 -0.01 2.17 16 37 H 0.06 1.93 7.39 -2.38 -0.02 1.91 16 38 H 0.03 1.39 6.59 -2.39 -0.02 1.37 16 39 H 0.04 1.71 4.73 -2.38 -0.01 1.70 16 40 H 0.27 13.64 8.31 -92.70 -0.77 12.87 16 41 H 0.07 2.57 8.05 -2.38 -0.02 2.55 16 42 H 0.06 2.33 7.44 -2.39 -0.02 2.31 16 43 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 44 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.04 1.44 6.23 -2.39 -0.01 1.43 16 46 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.03 1.12 6.56 -2.39 -0.02 1.10 16 50 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.05 1.61 7.27 -2.39 -0.02 1.60 16 Total: -1.00 -59.05 389.02 6.83 -52.23 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.89 Total: 31.89 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 5.32 Total: -26.61 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.37 Total: -75.36 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.04 Total: -25.65 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -59.05 6.83 -52.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537484853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.974 kcal (2) G-P(sol) polarization free energy of solvation -59.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds