Wall clock time and date at job start Tue Mar 31 2020 11:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38259 * 119.99804 * 2 1 4 4 C 1.38208 * 119.99770 * 179.74205 * 3 2 1 5 5 C 1.38254 * 120.00285 * 0.55576 * 4 3 2 6 6 C 1.38215 * 119.99499 * 359.70318 * 5 4 3 7 7 C 1.38213 * 120.00026 * 180.27715 * 2 1 3 8 8 C 1.50693 * 119.99928 * 0.02562 * 7 2 1 9 9 H 1.09008 * 109.47535 * 5.45972 * 8 7 2 10 10 C 1.53000 * 109.47099 * 125.45913 * 8 7 2 11 11 C 1.50701 * 109.47235 * 245.45887 * 8 7 2 12 12 O 1.21278 * 119.99774 * 332.94904 * 11 8 7 13 13 N 1.34777 * 120.00188 * 152.94356 * 11 8 7 14 14 C 1.46506 * 119.99676 * 5.10912 * 13 11 8 15 15 C 1.50703 * 109.46902 * 84.92974 * 14 13 11 16 16 H 1.07997 * 120.00280 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99419 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00432 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99527 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47136 * 90.00249 * 19 17 15 21 21 H 1.48503 * 109.47036 * 209.99956 * 19 17 15 22 22 H 1.48505 * 109.47483 * 329.99778 * 19 17 15 23 23 C 1.46502 * 120.00003 * 185.10716 * 13 11 8 24 24 C 1.52994 * 109.47035 * 91.83272 * 23 13 11 25 25 C 1.52998 * 109.47333 * 62.54597 * 24 23 13 26 26 C 1.52998 * 109.47209 * 182.55035 * 24 23 13 27 27 C 1.53005 * 109.47284 * 302.54688 * 24 23 13 28 28 H 1.08996 * 109.46922 * 263.91170 * 1 2 3 29 29 H 1.09008 * 109.46615 * 143.91117 * 1 2 3 30 30 H 1.08999 * 109.46938 * 23.91655 * 1 2 3 31 31 H 1.08002 * 119.99734 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.00138 * 180.28319 * 4 3 2 33 33 H 1.08002 * 120.00334 * 179.72319 * 5 4 3 34 34 H 1.08011 * 120.00084 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.47332 * 181.73058 * 10 8 7 36 36 H 1.08995 * 109.47710 * 301.73428 * 10 8 7 37 37 H 1.09005 * 109.47274 * 61.73905 * 10 8 7 38 38 H 1.09007 * 109.46722 * 204.92213 * 14 13 11 39 39 H 1.08994 * 109.47359 * 324.92469 * 14 13 11 40 40 H 0.97003 * 120.00473 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.46657 * 211.82979 * 23 13 11 42 42 H 1.08999 * 109.47122 * 331.83363 * 23 13 11 43 43 H 1.09001 * 109.47090 * 60.00184 * 25 24 23 44 44 H 1.09008 * 109.47292 * 180.02562 * 25 24 23 45 45 H 1.08990 * 109.47503 * 300.00121 * 25 24 23 46 46 H 1.09001 * 109.47095 * 59.99822 * 26 24 23 47 47 H 1.09001 * 109.47476 * 179.97438 * 26 24 23 48 48 H 1.09001 * 109.46887 * 299.99615 * 26 24 23 49 49 H 1.09004 * 109.46707 * 65.74245 * 27 24 23 50 50 H 1.08995 * 109.47561 * 185.74292 * 27 24 23 51 51 H 1.09005 * 109.47229 * 305.74714 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0054 5 6 4.2718 0.0001 -0.0008 6 6 3.5807 -1.1968 -0.0062 7 6 2.1982 -1.1969 -0.0058 8 6 1.4447 -2.5020 -0.0127 9 1 0.3770 -2.3047 -0.1099 10 6 1.9148 -3.3561 -1.1918 11 6 1.7041 -3.2386 1.2762 12 8 2.7378 -3.0537 1.8828 13 7 0.7872 -4.1028 1.7547 14 6 -0.4097 -4.4109 0.9681 15 6 -0.0960 -5.5098 -0.0143 16 1 0.8958 -5.9358 -0.0496 17 6 -1.0753 -5.9713 -0.8682 18 7 -2.2831 -5.4529 -0.8250 19 14 -0.6863 -7.3329 -2.0864 20 1 -0.9601 -8.6510 -1.4596 21 1 -1.5349 -7.1735 -3.2946 22 1 0.7454 -7.2567 -2.4736 23 6 0.9875 -4.7341 3.0615 24 6 0.3200 -3.8855 4.1455 25 6 -1.1878 -3.8282 3.8920 26 6 0.5832 -4.5108 5.5169 27 6 0.8970 -2.4689 4.1117 28 1 -0.3633 -0.1090 1.0218 29 1 -0.3633 -0.8305 -0.6054 30 1 -0.3633 0.9394 -0.4166 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1327 0.0100 33 1 5.3518 0.0002 -0.0011 34 1 4.1207 -2.1322 -0.0115 35 1 1.3482 -4.2870 -1.2149 36 1 1.7556 -2.8107 -2.1219 37 1 2.9758 -3.5793 -1.0786 38 1 -1.2086 -4.7365 1.6345 39 1 -0.7283 -3.5199 0.4271 40 1 -2.9720 -5.7773 -1.4259 41 1 0.5446 -5.7300 3.0555 42 1 2.0550 -4.8124 3.2674 43 1 -1.5989 -4.8374 3.9161 44 1 -1.6633 -3.2233 4.6641 45 1 -1.3753 -3.3828 2.9151 46 1 1.6574 -4.5515 5.6974 47 1 0.1080 -3.9060 6.2892 48 1 0.1721 -5.5200 5.5410 49 1 0.6215 -1.9867 3.1737 50 1 0.4974 -1.8937 4.9469 51 1 1.9831 -2.5169 4.1903 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001537484854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:23 Heat of formation + Delta-G solvation = -44.612999 kcal Electronic energy + Delta-G solvation = -28850.394894 eV Core-core repulsion = 25327.373703 eV Total energy + Delta-G solvation = -3523.021190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55808 -40.05026 -38.09920 -36.17767 -34.85374 -34.19512 -33.45321 -30.41054 -29.45826 -28.19897 -28.09340 -27.67761 -27.44155 -25.21052 -24.72050 -22.80785 -21.84208 -20.06096 -19.44117 -18.48729 -18.07187 -17.46748 -16.79924 -16.58405 -16.15197 -16.10797 -15.60576 -15.20825 -14.95857 -14.72338 -14.59147 -14.34640 -14.28693 -14.07613 -13.91835 -13.58603 -13.38490 -13.19085 -13.11237 -13.03730 -12.92595 -12.74344 -12.65927 -12.62988 -12.49195 -12.43201 -12.42240 -12.01747 -11.92206 -11.73726 -11.67195 -11.54077 -11.43535 -11.41557 -10.61663 -10.35775 -9.60386 -9.42177 -9.29063 -8.15792 -6.26654 0.48603 0.58208 1.40618 1.44445 1.51974 1.87452 2.34888 2.49312 2.95949 3.13845 3.78993 3.79548 3.90766 3.94004 4.04660 4.08887 4.12660 4.20861 4.34490 4.43391 4.49630 4.57715 4.60828 4.70337 4.75664 4.77032 4.81474 4.83635 4.90466 4.92755 4.92883 4.97349 5.00221 5.05951 5.06658 5.08356 5.20706 5.22160 5.27599 5.33855 5.34914 5.46405 5.48203 5.53048 5.64504 5.68670 5.71628 5.85745 5.96398 6.14149 6.20618 6.63741 6.89042 7.37629 7.50893 8.88910 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009719 B = 0.005926 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.272816 B = 4723.927654 C = 6399.353613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.095 4.095 3 C -0.128 4.128 4 C -0.119 4.119 5 C -0.138 4.138 6 C -0.097 4.097 7 C -0.083 4.083 8 C -0.066 4.066 9 H 0.097 0.903 10 C -0.142 4.142 11 C 0.527 3.473 12 O -0.583 6.583 13 N -0.593 5.593 14 C 0.251 3.749 15 C -0.534 4.534 16 H 0.051 0.949 17 C 0.029 3.971 18 N -0.915 5.915 19 Si 0.943 3.057 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.125 3.875 24 C -0.080 4.080 25 C -0.135 4.135 26 C -0.130 4.130 27 C -0.119 4.119 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.146 0.854 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.035 0.965 39 H 0.023 0.977 40 H 0.266 0.734 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.041 0.959 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.027 0.973 50 H 0.064 0.936 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.071 9.964 4.803 12.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.137 4.137 5 C -0.156 4.156 6 C -0.115 4.115 7 C -0.084 4.084 8 C -0.087 4.087 9 H 0.115 0.885 10 C -0.199 4.199 11 C 0.316 3.684 12 O -0.465 6.465 13 N -0.322 5.322 14 C 0.130 3.870 15 C -0.573 4.573 16 H 0.069 0.931 17 C -0.172 4.172 18 N -0.554 5.554 19 Si 0.769 3.231 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.196 1.196 23 C 0.002 3.998 24 C -0.081 4.081 25 C -0.192 4.192 26 C -0.187 4.187 27 C -0.176 4.176 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.164 0.836 32 H 0.167 0.833 33 H 0.155 0.845 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.040 0.960 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.046 0.954 50 H 0.083 0.917 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.393 10.017 5.037 12.442 hybrid contribution -0.071 -1.224 -0.892 1.516 sum 5.322 8.793 4.145 11.083 Atomic orbital electron populations 1.20862 0.90735 1.03477 1.02204 1.20019 0.96680 0.92781 0.99983 1.21261 0.94729 0.97353 1.01213 1.21424 0.94315 0.98554 0.99414 1.21346 1.00691 0.92216 1.01333 1.20985 0.93649 0.98419 0.98434 1.19462 0.94042 0.93243 1.01606 1.20188 1.01545 0.93057 0.93888 0.88469 1.21870 1.00912 1.01195 0.95949 1.20440 0.82684 0.79156 0.86122 1.90548 1.27227 1.67148 1.61533 1.48084 1.22782 1.42480 1.18820 1.19213 0.82458 0.95187 0.90098 1.21590 0.96800 1.19872 1.18999 0.93101 1.25475 0.94727 0.98359 0.98595 1.69985 1.03041 1.43216 1.39166 0.85787 0.78284 0.80041 0.79011 1.20328 1.20729 1.19590 1.21482 1.00212 0.95847 0.82231 1.20919 0.95792 0.95665 0.95706 1.21894 0.94466 1.01604 1.01257 1.21735 1.01725 1.00911 0.94354 1.21669 1.00005 0.95686 1.00268 0.91696 0.92214 0.89202 0.83647 0.83268 0.84509 0.87683 0.90149 0.91449 0.93324 0.94725 0.95957 0.92441 0.91234 0.91810 0.92951 0.91540 0.93949 0.92644 0.91081 0.91977 0.95409 0.91740 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 9.28 71.24 0.66 -2.56 16 2 C -0.09 -2.89 5.88 -19.86 -0.12 -3.01 16 3 C -0.13 -3.22 9.68 22.27 0.22 -3.01 16 4 C -0.12 -2.84 10.05 22.27 0.22 -2.62 16 5 C -0.14 -3.79 10.05 22.27 0.22 -3.57 16 6 C -0.10 -3.28 7.98 22.27 0.18 -3.11 16 7 C -0.08 -2.93 4.61 -19.87 -0.09 -3.02 16 8 C -0.07 -2.57 2.03 -12.29 -0.02 -2.59 16 9 H 0.10 3.91 3.54 -2.38 -0.01 3.91 16 10 C -0.14 -5.51 8.86 71.98 0.64 -4.87 16 11 C 0.53 22.21 5.08 87.66 0.45 22.66 16 12 O -0.58 -26.15 13.21 -3.02 -0.04 -26.19 16 13 N -0.59 -24.71 2.00 -826.14 -1.66 -26.37 16 14 C 0.25 11.61 3.79 85.63 0.32 11.94 16 15 C -0.53 -26.82 6.83 25.60 0.17 -26.64 16 16 H 0.05 2.64 7.49 -2.91 -0.02 2.62 16 17 C 0.03 1.49 5.46 84.65 0.46 1.95 16 18 N -0.91 -48.82 13.29 21.45 0.28 -48.54 16 19 Si 0.94 41.12 29.54 68.60 2.03 43.14 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 C 0.13 4.66 4.60 86.38 0.40 5.05 16 24 C -0.08 -2.47 0.85 -52.18 -0.04 -2.51 16 25 C -0.14 -4.20 7.28 71.98 0.52 -3.68 16 26 C -0.13 -3.18 8.47 71.98 0.61 -2.57 16 27 C -0.12 -3.85 7.20 71.98 0.52 -3.33 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.06 1.83 6.34 -2.38 -0.02 1.81 16 30 H 0.09 1.94 8.04 -2.39 -0.02 1.92 16 31 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 34 H 0.11 3.82 6.94 -2.91 -0.02 3.80 16 35 H 0.08 3.52 4.93 -2.38 -0.01 3.51 16 36 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.05 1.82 7.17 -2.38 -0.02 1.81 16 38 H 0.03 1.67 6.05 -2.38 -0.01 1.66 16 39 H 0.02 1.10 5.98 -2.39 -0.01 1.08 16 40 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 41 H 0.07 2.59 8.09 -2.39 -0.02 2.58 16 42 H 0.06 2.46 7.31 -2.39 -0.02 2.44 16 43 H 0.05 1.63 8.13 -2.39 -0.02 1.61 16 44 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.04 1.52 5.88 -2.39 -0.01 1.50 16 46 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 47 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.03 1.00 6.80 -2.38 -0.02 0.99 16 50 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.04 1.54 7.46 -2.38 -0.02 1.53 16 Total: -1.00 -58.29 386.92 6.83 -51.46 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.90 Total: 31.98 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 5.32 Total: -25.49 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -1.37 Total: -74.90 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.04 Total: -26.19 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -58.29 6.83 -51.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001537484854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.846 kcal (2) G-P(sol) polarization free energy of solvation -58.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds