Wall clock time and date at job start Tue Mar 31 2020 12:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47042 * 2 1 4 4 C 1.52999 * 109.46571 * 119.99871 * 2 1 3 5 5 C 1.53003 * 109.46987 * 172.43814 * 4 2 1 6 6 C 1.53003 * 109.87690 * 306.99614 * 5 4 2 7 7 C 1.54320 * 109.89098 * 68.19475 * 5 4 2 8 8 C 1.55140 * 103.01739 * 141.68835 * 7 5 4 9 9 C 1.54907 * 101.65644 * 324.35264 * 8 7 5 10 10 N 1.47445 * 109.88835 * 185.96749 * 5 4 2 11 11 C 1.46892 * 111.00088 * 3.85058 * 10 5 4 12 12 C 1.50705 * 109.47243 * 175.33461 * 11 10 5 13 13 C 1.38305 * 119.92633 * 89.99737 * 12 11 10 14 14 C 1.38104 * 120.06478 * 179.97438 * 13 12 11 15 15 C 1.38881 * 119.92840 * 359.97438 * 14 13 12 16 16 O 1.35752 * 120.06699 * 179.97438 * 15 14 13 17 17 C 1.34838 * 117.00142 * 5.61654 * 16 15 14 18 18 H 1.08000 * 119.99574 * 354.91982 * 17 16 15 19 19 C 1.38652 * 120.00040 * 174.91437 * 17 16 15 20 20 N 1.31559 * 119.99557 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 120.00064 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47219 * 269.99448 * 21 19 17 23 23 H 1.48498 * 109.47261 * 29.99578 * 21 19 17 24 24 H 1.48506 * 109.47185 * 149.99799 * 21 19 17 25 25 C 1.38881 * 119.86683 * 0.25616 * 15 14 13 26 26 C 1.38104 * 119.92390 * 359.48747 * 25 15 14 27 27 H 1.08998 * 109.47550 * 300.00581 * 1 2 3 28 28 H 1.09006 * 109.46693 * 60.00063 * 1 2 3 29 29 H 1.09001 * 109.47251 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47421 * 239.99942 * 2 1 3 31 31 H 1.09001 * 109.47413 * 72.76491 * 3 2 1 32 32 H 1.09001 * 109.47131 * 192.76030 * 3 2 1 33 33 H 1.08998 * 109.47402 * 312.75925 * 3 2 1 34 34 H 1.08998 * 109.47394 * 52.43464 * 4 2 1 35 35 H 1.09000 * 109.47143 * 292.43431 * 4 2 1 36 36 H 1.08995 * 109.47295 * 298.96786 * 6 5 4 37 37 H 1.09008 * 109.46892 * 58.97096 * 6 5 4 38 38 H 1.09001 * 109.46879 * 178.96812 * 6 5 4 39 39 H 1.08995 * 110.70877 * 260.07488 * 7 5 4 40 40 H 1.09005 * 110.70489 * 23.13725 * 7 5 4 41 41 H 1.09004 * 110.98749 * 82.43921 * 8 7 5 42 42 H 1.08998 * 110.99297 * 206.21804 * 8 7 5 43 43 H 1.09006 * 110.36794 * 278.23700 * 9 8 7 44 44 H 1.08994 * 110.37430 * 155.89961 * 9 8 7 45 45 H 1.09005 * 109.47406 * 55.33823 * 11 10 5 46 46 H 1.09001 * 109.47330 * 295.33744 * 11 10 5 47 47 H 1.07994 * 119.96909 * 359.95845 * 13 12 11 48 48 H 1.07996 * 120.03659 * 180.02562 * 14 13 12 49 49 H 0.97003 * 119.99388 * 180.02562 * 20 19 17 50 50 H 1.07999 * 120.03407 * 179.72598 * 25 15 14 51 51 H 1.07999 * 119.95927 * 180.23121 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5581 -0.8878 1.1581 6 6 3.9294 -1.5566 -0.1670 7 6 4.2448 0.4900 1.2652 8 6 5.5064 0.1865 2.1156 9 6 4.9731 -0.8901 3.0935 10 7 4.0416 -1.7057 2.2856 11 6 2.9214 -2.1902 3.1030 12 6 3.4432 -3.1128 4.1742 13 6 3.8173 -2.6011 5.4034 14 6 4.2954 -3.4441 6.3873 15 6 4.3999 -4.8069 6.1415 16 8 4.8700 -5.6381 7.1064 17 6 5.1083 -5.0965 8.3180 18 1 5.0031 -4.0315 8.4635 19 6 5.4881 -5.9068 9.3771 20 7 5.7201 -5.3783 10.5593 21 14 5.6704 -7.7487 9.1252 22 1 4.3737 -8.4171 9.4030 23 1 6.0759 -8.0187 7.7224 24 1 6.7065 -8.2746 10.0499 25 6 4.0280 -5.3171 4.9044 26 6 3.5456 -4.4696 3.9265 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8740 1.8866 0.9815 32 1 3.1061 1.4509 -0.2270 33 1 1.5033 2.0176 -0.7545 34 1 1.5703 -1.7024 1.3195 35 1 1.7912 -0.1352 2.1341 36 1 3.4709 -2.5442 -0.2165 37 1 3.5689 -0.9466 -0.9954 38 1 5.0129 -1.6553 -0.2330 39 1 4.5247 0.8589 0.2785 40 1 3.5973 1.2049 1.7731 41 1 6.3087 -0.2127 1.4951 42 1 5.8372 1.0746 2.6542 43 1 4.4447 -0.4206 3.9232 44 1 5.7928 -1.5054 3.4641 45 1 2.2167 -2.7300 2.4703 46 1 2.4172 -1.3427 3.5674 47 1 3.7357 -1.5412 5.5940 48 1 4.5870 -3.0440 7.3472 49 1 5.9862 -5.9452 11.3001 50 1 4.1123 -6.3758 4.7088 51 1 3.2527 -4.8662 2.9656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618069251.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:48 Heat of formation + Delta-G solvation = -15.375730 kcal Electronic energy + Delta-G solvation = -27250.287205 eV Core-core repulsion = 23728.533837 eV Total energy + Delta-G solvation = -3521.753367 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.45796 -40.69163 -38.47650 -36.69312 -34.54797 -33.75402 -32.26388 -31.76025 -30.45452 -28.26201 -27.74875 -27.42365 -26.23376 -25.30478 -23.70446 -22.36419 -21.64768 -21.20419 -19.80067 -19.34398 -18.98156 -17.06630 -16.90326 -16.67825 -16.10541 -16.07716 -15.67054 -15.63799 -15.33502 -15.16137 -14.57828 -14.51310 -14.38060 -14.17677 -14.08661 -13.88209 -13.68612 -13.41046 -13.20146 -13.04274 -12.91650 -12.81755 -12.53228 -12.43689 -12.34531 -12.20147 -12.10588 -11.95323 -11.78206 -11.51350 -11.48591 -11.37547 -11.24537 -11.10848 -11.04042 -10.89654 -9.79158 -9.18991 -8.92440 -8.50848 -6.23261 0.57564 0.63580 1.30501 1.34710 1.51449 2.27567 2.70922 2.98060 3.11957 3.27278 3.67862 3.75848 3.90101 3.98942 4.03798 4.12615 4.17024 4.21735 4.26796 4.42036 4.44936 4.48620 4.56651 4.60700 4.69783 4.72709 4.78635 4.82856 4.86311 4.93518 4.96752 4.98433 4.99646 5.06607 5.11489 5.14501 5.16708 5.20499 5.25111 5.27814 5.35836 5.36629 5.40628 5.49360 5.55351 5.58392 5.68977 5.76444 5.81276 5.90781 6.19225 6.22677 6.33266 6.83684 7.58694 8.60962 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.026348 B = 0.002625 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.438335 B =10664.176375 C =10934.592850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.159 4.159 4 C -0.124 4.124 5 C 0.098 3.902 6 C -0.126 4.126 7 C -0.126 4.126 8 C -0.130 4.130 9 C 0.044 3.956 10 N -0.524 5.524 11 C 0.110 3.890 12 C -0.144 4.144 13 C -0.066 4.066 14 C -0.236 4.236 15 C 0.120 3.880 16 O -0.246 6.246 17 C -0.399 4.399 18 H 0.079 0.921 19 C 0.009 3.991 20 N -0.924 5.924 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.267 1.267 25 C -0.192 4.192 26 C -0.051 4.051 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.054 0.946 45 H 0.095 0.905 46 H 0.043 0.957 47 H 0.124 0.876 48 H 0.105 0.895 49 H 0.285 0.715 50 H 0.127 0.873 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 12.735 -25.015 29.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.216 4.216 4 C -0.162 4.162 5 C 0.010 3.990 6 C -0.183 4.183 7 C -0.164 4.164 8 C -0.168 4.168 9 C -0.084 4.084 10 N -0.248 5.248 11 C -0.017 4.017 12 C -0.145 4.145 13 C -0.084 4.084 14 C -0.255 4.255 15 C 0.071 3.929 16 O -0.154 6.154 17 C -0.475 4.475 18 H 0.097 0.903 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.188 1.188 24 H -0.191 1.191 25 C -0.211 4.211 26 C -0.069 4.069 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.113 0.887 46 H 0.061 0.939 47 H 0.142 0.858 48 H 0.123 0.877 49 H 0.094 0.906 50 H 0.145 0.855 51 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.346 12.034 -24.994 28.696 hybrid contribution -0.044 0.109 1.486 1.490 sum -7.390 12.143 -23.508 27.472 Atomic orbital electron populations 1.21852 0.95290 1.01654 1.01683 1.21171 0.95528 0.96570 0.97985 1.22273 1.02393 0.95545 1.01350 1.22259 0.94620 1.00951 0.98376 1.21807 0.93593 0.91699 0.91942 1.21810 1.01142 1.00401 0.94993 1.23201 0.95932 0.96352 1.00929 1.22744 0.98341 0.98056 0.97698 1.22971 0.95802 0.94062 0.95580 1.63634 1.15288 1.36851 1.09018 1.21070 0.92421 0.95936 0.92286 1.19697 1.05449 0.94520 0.94837 1.20859 0.96390 0.98660 0.92540 1.21217 1.09493 0.93584 1.01222 1.19656 0.93483 0.90014 0.89762 1.83517 1.75209 1.37110 1.19529 1.20698 1.47677 0.94881 0.84257 0.90321 1.25287 0.95604 1.04773 0.93230 1.69735 1.46769 1.38578 1.01452 0.85208 0.78889 0.77700 0.78855 1.19001 1.18775 1.19137 1.20517 1.07772 1.00963 0.91844 1.20875 0.95864 0.92367 0.97799 0.93322 0.92161 0.92850 0.90069 0.93348 0.90843 0.92728 0.91240 0.92575 0.93036 0.90624 0.93290 0.88987 0.90720 0.90993 0.90261 0.94155 0.92726 0.88706 0.93914 0.85773 0.87698 0.90576 0.85464 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.15 71.98 0.66 -1.04 16 2 C -0.09 -1.10 2.60 -10.79 -0.03 -1.12 16 3 C -0.16 -1.69 7.73 71.98 0.56 -1.13 16 4 C -0.12 -1.83 2.67 30.60 0.08 -1.75 16 5 C 0.10 1.62 0.91 3.87 0.00 1.62 16 6 C -0.13 -1.92 8.21 71.98 0.59 -1.33 16 7 C -0.13 -1.83 4.00 31.78 0.13 -1.70 16 8 C -0.13 -2.31 7.08 31.98 0.23 -2.08 16 9 C 0.04 1.03 5.47 86.77 0.47 1.50 16 10 N -0.52 -11.69 4.82 -841.00 -4.05 -15.74 16 11 C 0.11 2.57 3.83 85.56 0.33 2.90 16 12 C -0.14 -4.45 4.99 -19.83 -0.10 -4.55 16 13 C -0.07 -2.36 8.72 22.25 0.19 -2.16 16 14 C -0.24 -10.69 9.17 22.39 0.21 -10.48 16 15 C 0.12 5.76 6.65 22.58 0.15 5.91 16 16 O -0.25 -13.70 8.59 -22.84 -0.20 -13.90 16 17 C -0.40 -24.02 9.95 67.92 0.68 -23.35 16 18 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 19 C 0.01 0.54 5.49 84.83 0.47 1.01 16 20 N -0.92 -56.08 13.96 21.61 0.30 -55.78 16 21 Si 0.97 46.24 28.62 68.60 1.96 48.20 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 25 C -0.19 -7.56 9.99 22.39 0.22 -7.34 16 26 C -0.05 -1.62 9.69 22.25 0.22 -1.41 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.89 5.90 -2.39 -0.01 0.88 16 31 H 0.05 0.57 7.31 -2.39 -0.02 0.55 16 32 H 0.07 0.71 4.84 -2.39 -0.01 0.70 16 33 H 0.05 0.53 8.08 -2.39 -0.02 0.51 16 34 H 0.07 1.09 6.07 -2.39 -0.01 1.08 16 35 H 0.06 0.92 6.96 -2.39 -0.02 0.91 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.87 6.14 -2.38 -0.01 0.85 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 1.06 6.21 -2.39 -0.01 1.05 16 40 H 0.07 1.06 6.19 -2.38 -0.01 1.04 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 43 H 0.04 0.97 6.65 -2.38 -0.02 0.96 16 44 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.09 1.96 6.22 -2.38 -0.01 1.94 16 46 H 0.04 0.97 6.78 -2.39 -0.02 0.95 16 47 H 0.12 3.88 7.24 -2.91 -0.02 3.86 16 48 H 0.11 5.24 5.64 -2.91 -0.02 5.23 16 49 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 50 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 51 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -65.77 378.83 3.97 -61.79 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.91 Total: 21.93 kcal Atomic # 6 Polarization: -51.56 SS G_CDS: 5.05 Total: -46.51 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -3.75 Total: -71.52 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.20 Total: -13.90 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.96 Total: 48.20 kcal Total: -65.77 3.97 -61.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618069251.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.417 kcal (2) G-P(sol) polarization free energy of solvation -65.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds