Wall clock time and date at job start Tue Mar 31 2020 12:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47352 * 2 1 4 4 C 1.53005 * 109.46838 * 240.00358 * 2 1 3 5 5 C 1.53002 * 109.46937 * 277.82389 * 4 2 1 6 6 C 1.53004 * 109.87638 * 62.33309 * 5 4 2 7 7 C 1.54312 * 109.89123 * 301.29529 * 5 4 2 8 8 C 1.55395 * 102.90319 * 218.40823 * 7 5 4 9 9 C 1.54910 * 101.73717 * 35.48183 * 8 7 5 10 10 N 1.47446 * 109.88489 * 183.35876 * 5 4 2 11 11 C 1.46899 * 111.00222 * 356.15010 * 10 5 4 12 12 C 1.50698 * 109.47291 * 189.99716 * 11 10 5 13 13 C 1.38306 * 119.93287 * 269.73060 * 12 11 10 14 14 C 1.38101 * 120.06829 * 179.72217 * 13 12 11 15 15 C 1.38876 * 119.93138 * 0.56914 * 14 13 12 16 16 O 1.35748 * 120.07038 * 179.68296 * 15 14 13 17 17 C 1.34828 * 117.00030 * 186.40878 * 16 15 14 18 18 H 1.07999 * 120.00243 * 5.70456 * 17 16 15 19 19 C 1.38651 * 120.00210 * 185.70946 * 17 16 15 20 20 N 1.31561 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00447 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46953 * 59.99934 * 21 19 17 23 23 H 1.48494 * 109.47313 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47375 * 300.00088 * 21 19 17 25 25 C 1.38885 * 119.86006 * 359.70303 * 15 14 13 26 26 C 1.38090 * 119.93213 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.47332 * 68.80910 * 1 2 3 28 28 H 1.09000 * 109.46958 * 188.80792 * 1 2 3 29 29 H 1.09001 * 109.47103 * 308.81205 * 1 2 3 30 30 H 1.08991 * 109.47477 * 120.00714 * 2 1 3 31 31 H 1.09002 * 109.47173 * 300.00312 * 3 2 1 32 32 H 1.08998 * 109.46700 * 59.99973 * 3 2 1 33 33 H 1.08998 * 109.47401 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47374 * 37.82750 * 4 2 1 35 35 H 1.09002 * 109.46803 * 157.82600 * 4 2 1 36 36 H 1.08992 * 109.47085 * 45.27084 * 6 5 4 37 37 H 1.09003 * 109.46567 * 165.27175 * 6 5 4 38 38 H 1.09002 * 109.46527 * 285.26879 * 6 5 4 39 39 H 1.08998 * 110.70777 * 336.69969 * 7 5 4 40 40 H 1.09001 * 110.70090 * 99.92998 * 7 5 4 41 41 H 1.09001 * 110.87013 * 277.39787 * 8 7 5 42 42 H 1.08996 * 111.05805 * 153.65229 * 8 7 5 43 43 H 1.09002 * 110.36927 * 204.18937 * 9 8 7 44 44 H 1.08999 * 110.46427 * 81.90117 * 9 8 7 45 45 H 1.08993 * 109.46959 * 310.00033 * 11 10 5 46 46 H 1.09007 * 109.47108 * 70.00205 * 11 10 5 47 47 H 1.07998 * 119.96534 * 359.97438 * 13 12 11 48 48 H 1.07993 * 120.03428 * 180.27178 * 14 13 12 49 49 H 0.97004 * 120.00252 * 179.97438 * 20 19 17 50 50 H 1.08000 * 120.02946 * 180.02562 * 25 15 14 51 51 H 1.07999 * 119.96842 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0247 -2.2320 -1.0080 6 6 0.5907 -2.7050 -0.7611 7 6 2.9086 -2.5782 0.2087 8 6 3.5925 -3.9043 -0.2254 9 6 3.7943 -3.6725 -1.7437 10 7 2.5898 -2.9322 -2.1760 11 6 2.9117 -1.9856 -3.2523 12 6 3.2517 -2.7481 -4.5069 13 6 4.5615 -3.1143 -4.7584 14 6 4.8753 -3.8181 -5.9044 15 6 3.8759 -4.1478 -6.8106 16 8 4.1823 -4.8340 -7.9412 17 6 3.1922 -5.0059 -8.8401 18 1 2.2358 -4.5278 -8.6881 19 6 3.4018 -5.7966 -9.9596 20 7 4.5669 -6.3787 -10.1450 21 14 2.0299 -6.0354 -11.2047 22 1 1.6349 -4.7179 -11.7648 23 1 2.5046 -6.9168 -12.3014 24 1 0.8596 -6.6606 -10.5379 25 6 2.5625 -3.7738 -6.5579 26 6 2.2542 -3.0751 -5.4074 27 1 -0.3634 0.3715 -0.9582 28 1 -0.3633 -1.0156 0.1574 29 1 -0.3633 0.6441 0.8008 30 1 1.8933 -0.5139 0.8898 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.3958 -0.4819 -2.0954 35 1 3.0583 -0.3979 -1.4652 36 1 -0.0730 -2.2523 -1.4977 37 1 0.5459 -3.7904 -0.8500 38 1 0.2780 -2.4091 0.2403 39 1 3.6520 -1.7995 0.3790 40 1 2.2973 -2.7301 1.0982 41 1 2.9374 -4.7565 -0.0442 42 1 4.5492 -4.0353 0.2801 43 1 3.8619 -4.6261 -2.2674 44 1 4.6900 -3.0778 -1.9227 45 1 2.0520 -1.3425 -3.4397 46 1 3.7647 -1.3749 -2.9560 47 1 5.3390 -2.8531 -4.0558 48 1 5.8976 -4.1075 -6.0981 49 1 4.7135 -6.9322 -10.9280 50 1 1.7831 -4.0292 -7.2606 51 1 1.2330 -2.7843 -5.2102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001618069264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:52 Heat of formation + Delta-G solvation = -5.395794 kcal Electronic energy + Delta-G solvation = -27160.635173 eV Core-core repulsion = 23639.314568 eV Total energy + Delta-G solvation = -3521.320605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.39166 -38.86425 -36.72981 -35.88722 -32.80648 -32.04539 -31.37203 -30.10681 -28.81592 -28.10004 -26.70822 -25.62213 -25.01178 -24.04889 -22.10674 -21.49108 -20.38114 -20.25199 -18.42829 -17.93156 -16.89119 -16.08757 -15.81130 -15.38917 -14.82091 -14.58197 -14.42571 -14.20057 -13.97841 -13.73058 -13.55136 -13.39431 -13.13799 -12.83350 -12.75193 -12.63212 -12.42827 -12.29323 -12.16136 -12.01679 -11.68292 -11.52142 -11.44389 -11.19691 -11.07622 -10.88111 -10.83521 -10.79122 -10.66159 -10.59494 -10.49365 -10.42784 -10.33885 -10.20907 -9.31519 -8.78701 -8.14097 -8.09218 -7.11200 -6.41579 -4.00197 2.28043 2.35874 3.15423 3.16289 3.19104 3.99607 4.00424 4.39886 4.58340 4.63485 4.74727 4.76152 4.81119 4.97942 5.15210 5.18186 5.22017 5.29576 5.31228 5.41198 5.42190 5.46070 5.49376 5.56158 5.57002 5.64188 5.68515 5.71645 5.75045 5.79472 5.82668 5.88224 5.90206 5.92341 6.01450 6.04409 6.12541 6.15126 6.17496 6.22713 6.27770 6.39358 6.49275 6.76212 6.96141 7.09999 7.15334 7.27382 7.34460 7.48303 7.50169 7.89306 8.03709 9.04238 9.75472 10.76602 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.002636 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.305516 B =10618.447463 C =11028.025446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.127 4.127 5 C 0.099 3.901 6 C -0.131 4.131 7 C -0.130 4.130 8 C -0.131 4.131 9 C 0.048 3.952 10 N -0.513 5.513 11 C 0.107 3.893 12 C -0.176 4.176 13 C -0.068 4.068 14 C -0.194 4.194 15 C 0.154 3.846 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.090 0.910 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.940 3.060 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.234 4.234 26 C -0.051 4.051 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.105 0.895 48 H 0.114 0.886 49 H 0.270 0.730 50 H 0.125 0.875 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.647 10.874 21.135 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.165 4.165 5 C 0.009 3.991 6 C -0.188 4.188 7 C -0.169 4.169 8 C -0.169 4.169 9 C -0.080 4.080 10 N -0.237 5.237 11 C -0.020 4.020 12 C -0.177 4.177 13 C -0.087 4.087 14 C -0.213 4.213 15 C 0.101 3.899 16 O -0.083 6.083 17 C -0.467 4.467 18 H 0.108 0.892 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.253 4.253 26 C -0.070 4.070 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.051 0.949 47 H 0.123 0.877 48 H 0.132 0.868 49 H 0.080 0.920 50 H 0.143 0.857 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.693 10.267 20.649 23.753 hybrid contribution -0.088 0.419 -0.418 0.598 sum -5.782 10.686 20.231 23.599 Atomic orbital electron populations 1.22284 0.95289 1.02879 1.01480 1.21135 0.96018 0.95806 0.98455 1.21869 1.00728 0.96300 1.01561 1.22345 1.01518 0.94629 0.98000 1.21749 0.95520 0.91885 0.89931 1.22057 0.94716 1.01723 1.00333 1.22932 0.98714 0.97417 0.97818 1.22756 1.00498 0.97737 0.95946 1.23018 0.91520 0.99294 0.94140 1.63705 1.27572 1.25580 1.06801 1.21052 0.99091 0.92572 0.89275 1.19123 0.93482 1.07881 0.97231 1.20464 0.95219 0.97265 0.95747 1.20149 0.98233 1.06779 0.96154 1.19397 0.92512 0.90767 0.87244 1.83989 1.37861 1.62865 1.23590 1.21259 0.93948 1.31176 1.00277 0.89216 1.25277 0.97894 0.95572 0.97787 1.70032 1.22061 1.29662 1.28190 0.85798 0.79709 0.78714 0.79317 1.19527 1.20311 1.19511 1.21155 0.96702 1.07156 1.00310 1.20540 0.97485 0.96025 0.92946 0.92828 0.90920 0.93354 0.91081 0.92751 0.92963 0.92948 0.90982 0.91797 0.92592 0.92252 0.92188 0.91602 0.91067 0.90886 0.91267 0.90126 0.93820 0.90598 0.94878 0.87731 0.86772 0.92027 0.85722 0.87689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 8.49 37.16 0.32 -0.90 16 2 C -0.10 -0.75 2.60 -90.62 -0.24 -0.98 16 3 C -0.15 -1.09 9.07 37.16 0.34 -0.76 16 4 C -0.13 -1.19 2.60 -26.73 -0.07 -1.26 16 5 C 0.10 1.01 0.90 -130.61 -0.12 0.89 16 6 C -0.13 -1.28 7.14 37.16 0.27 -1.01 16 7 C -0.13 -1.18 4.59 -24.77 -0.11 -1.30 16 8 C -0.13 -1.31 7.08 -24.45 -0.17 -1.48 16 9 C 0.05 0.60 5.62 -2.30 -0.01 0.58 16 10 N -0.51 -6.63 4.78 -217.17 -1.04 -7.66 16 11 C 0.11 1.47 3.84 -4.98 -0.02 1.45 16 12 C -0.18 -3.04 5.09 -104.57 -0.53 -3.57 16 13 C -0.07 -1.23 8.92 -39.61 -0.35 -1.58 16 14 C -0.19 -4.16 9.99 -39.40 -0.39 -4.56 16 15 C 0.15 3.80 6.64 -39.11 -0.26 3.54 16 16 O -0.18 -5.21 9.76 0.06 0.00 -5.21 16 17 C -0.39 -11.06 9.43 30.88 0.29 -10.77 16 18 H 0.09 2.36 5.32 -52.49 -0.28 2.08 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.65 13.67 55.48 0.76 -24.89 16 21 Si 0.94 20.77 29.55 -169.99 -5.02 15.75 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 C -0.23 -5.20 9.13 -39.40 -0.36 -5.56 16 26 C -0.05 -0.97 9.69 -39.61 -0.38 -1.35 16 27 H 0.05 0.42 7.93 -51.93 -0.41 0.01 16 28 H 0.07 0.53 4.40 -51.93 -0.23 0.30 16 29 H 0.05 0.33 8.12 -51.93 -0.42 -0.09 16 30 H 0.07 0.55 6.49 -51.93 -0.34 0.21 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 34 H 0.07 0.73 6.20 -51.93 -0.32 0.41 16 35 H 0.06 0.64 6.59 -51.93 -0.34 0.30 16 36 H 0.06 0.57 7.72 -51.93 -0.40 0.16 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.48 5.62 -51.93 -0.29 0.19 16 39 H 0.07 0.58 7.71 -51.93 -0.40 0.18 16 40 H 0.07 0.57 7.57 -51.93 -0.39 0.18 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.04 0.54 7.00 -51.93 -0.36 0.18 16 45 H 0.08 1.00 6.07 -51.93 -0.32 0.69 16 46 H 0.03 0.44 6.70 -51.92 -0.35 0.09 16 47 H 0.10 1.61 7.49 -52.49 -0.39 1.22 16 48 H 0.11 2.38 8.06 -52.49 -0.42 1.96 16 49 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.13 2.79 5.73 -52.49 -0.30 2.49 16 51 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -30.05 383.47 -9.92 -39.98 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.49 Total: 3.88 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -1.91 Total: -27.63 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: -0.28 Total: -32.55 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: 0.00 Total: -5.21 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.05 -9.92 -39.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618069264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.582 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds