Wall clock time and date at job start Tue Mar 31 2020 12:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47352 * 2 1 4 4 C 1.53005 * 109.46838 * 240.00358 * 2 1 3 5 5 C 1.53002 * 109.46937 * 277.82389 * 4 2 1 6 6 C 1.53004 * 109.87638 * 62.33309 * 5 4 2 7 7 C 1.54312 * 109.89123 * 301.29529 * 5 4 2 8 8 C 1.55395 * 102.90319 * 218.40823 * 7 5 4 9 9 C 1.54910 * 101.73717 * 35.48183 * 8 7 5 10 10 N 1.47446 * 109.88489 * 183.35876 * 5 4 2 11 11 C 1.46899 * 111.00222 * 356.15010 * 10 5 4 12 12 C 1.50698 * 109.47291 * 189.99716 * 11 10 5 13 13 C 1.38306 * 119.93287 * 269.73060 * 12 11 10 14 14 C 1.38101 * 120.06829 * 179.72217 * 13 12 11 15 15 C 1.38876 * 119.93138 * 0.56914 * 14 13 12 16 16 O 1.35748 * 120.07038 * 179.68296 * 15 14 13 17 17 C 1.34828 * 117.00030 * 186.40878 * 16 15 14 18 18 H 1.07999 * 120.00243 * 5.70456 * 17 16 15 19 19 C 1.38651 * 120.00210 * 185.70946 * 17 16 15 20 20 N 1.31561 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00447 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46953 * 59.99934 * 21 19 17 23 23 H 1.48494 * 109.47313 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47375 * 300.00088 * 21 19 17 25 25 C 1.38885 * 119.86006 * 359.70303 * 15 14 13 26 26 C 1.38090 * 119.93213 * 0.02562 * 25 15 14 27 27 H 1.09003 * 109.47332 * 68.80910 * 1 2 3 28 28 H 1.09000 * 109.46958 * 188.80792 * 1 2 3 29 29 H 1.09001 * 109.47103 * 308.81205 * 1 2 3 30 30 H 1.08991 * 109.47477 * 120.00714 * 2 1 3 31 31 H 1.09002 * 109.47173 * 300.00312 * 3 2 1 32 32 H 1.08998 * 109.46700 * 59.99973 * 3 2 1 33 33 H 1.08998 * 109.47401 * 180.02562 * 3 2 1 34 34 H 1.08994 * 109.47374 * 37.82750 * 4 2 1 35 35 H 1.09002 * 109.46803 * 157.82600 * 4 2 1 36 36 H 1.08992 * 109.47085 * 45.27084 * 6 5 4 37 37 H 1.09003 * 109.46567 * 165.27175 * 6 5 4 38 38 H 1.09002 * 109.46527 * 285.26879 * 6 5 4 39 39 H 1.08998 * 110.70777 * 336.69969 * 7 5 4 40 40 H 1.09001 * 110.70090 * 99.92998 * 7 5 4 41 41 H 1.09001 * 110.87013 * 277.39787 * 8 7 5 42 42 H 1.08996 * 111.05805 * 153.65229 * 8 7 5 43 43 H 1.09002 * 110.36927 * 204.18937 * 9 8 7 44 44 H 1.08999 * 110.46427 * 81.90117 * 9 8 7 45 45 H 1.08993 * 109.46959 * 310.00033 * 11 10 5 46 46 H 1.09007 * 109.47108 * 70.00205 * 11 10 5 47 47 H 1.07998 * 119.96534 * 359.97438 * 13 12 11 48 48 H 1.07993 * 120.03428 * 180.27178 * 14 13 12 49 49 H 0.97004 * 120.00252 * 179.97438 * 20 19 17 50 50 H 1.08000 * 120.02946 * 180.02562 * 25 15 14 51 51 H 1.07999 * 119.96842 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0247 -2.2320 -1.0080 6 6 0.5907 -2.7050 -0.7611 7 6 2.9086 -2.5782 0.2087 8 6 3.5925 -3.9043 -0.2254 9 6 3.7943 -3.6725 -1.7437 10 7 2.5898 -2.9322 -2.1760 11 6 2.9117 -1.9856 -3.2523 12 6 3.2517 -2.7481 -4.5069 13 6 4.5615 -3.1143 -4.7584 14 6 4.8753 -3.8181 -5.9044 15 6 3.8759 -4.1478 -6.8106 16 8 4.1823 -4.8340 -7.9412 17 6 3.1922 -5.0059 -8.8401 18 1 2.2358 -4.5278 -8.6881 19 6 3.4018 -5.7966 -9.9596 20 7 4.5669 -6.3787 -10.1450 21 14 2.0299 -6.0354 -11.2047 22 1 1.6349 -4.7179 -11.7648 23 1 2.5046 -6.9168 -12.3014 24 1 0.8596 -6.6606 -10.5379 25 6 2.5625 -3.7738 -6.5579 26 6 2.2542 -3.0751 -5.4074 27 1 -0.3634 0.3715 -0.9582 28 1 -0.3633 -1.0156 0.1574 29 1 -0.3633 0.6441 0.8008 30 1 1.8933 -0.5139 0.8898 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.3958 -0.4819 -2.0954 35 1 3.0583 -0.3979 -1.4652 36 1 -0.0730 -2.2523 -1.4977 37 1 0.5459 -3.7904 -0.8500 38 1 0.2780 -2.4091 0.2403 39 1 3.6520 -1.7995 0.3790 40 1 2.2973 -2.7301 1.0982 41 1 2.9374 -4.7565 -0.0442 42 1 4.5492 -4.0353 0.2801 43 1 3.8619 -4.6261 -2.2674 44 1 4.6900 -3.0778 -1.9227 45 1 2.0520 -1.3425 -3.4397 46 1 3.7647 -1.3749 -2.9560 47 1 5.3390 -2.8531 -4.0558 48 1 5.8976 -4.1075 -6.0981 49 1 4.7135 -6.9322 -10.9280 50 1 1.7831 -4.0292 -7.2606 51 1 1.2330 -2.7843 -5.2102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001618069264.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:51 Heat of formation + Delta-G solvation = -21.625547 kcal Electronic energy + Delta-G solvation = -27161.338948 eV Core-core repulsion = 23639.314568 eV Total energy + Delta-G solvation = -3522.024380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.36004 -40.55813 -38.34024 -36.73671 -34.44107 -33.59078 -32.17703 -31.74583 -30.24212 -28.78230 -27.55495 -27.30313 -25.98706 -25.30237 -23.66407 -22.63761 -21.71263 -21.05269 -19.83463 -19.29670 -18.75563 -16.99299 -16.79748 -16.49268 -16.31959 -16.00493 -15.76309 -15.49197 -15.36147 -14.94228 -14.75538 -14.57217 -14.33125 -14.16996 -13.85997 -13.70311 -13.48106 -13.38312 -13.18364 -12.95160 -12.91904 -12.82519 -12.48904 -12.42411 -12.27298 -12.16124 -12.09874 -11.92740 -11.80106 -11.54996 -11.48488 -11.36838 -11.28299 -11.17381 -10.98309 -10.77027 -9.75790 -9.14685 -8.85351 -8.46888 -6.14881 0.61457 0.70393 1.34367 1.45254 1.50747 2.18097 2.76429 3.05623 3.30446 3.51920 3.66400 3.79134 3.92843 4.04885 4.08621 4.13918 4.17768 4.22816 4.26627 4.42789 4.44512 4.48388 4.57067 4.62548 4.66608 4.78458 4.80653 4.86724 4.89898 4.91952 4.94180 5.00047 5.04540 5.09543 5.11561 5.13513 5.15224 5.17400 5.20994 5.26250 5.32207 5.34361 5.40688 5.51255 5.57451 5.60613 5.65380 5.73211 5.84005 6.03094 6.21566 6.23432 6.35209 6.97823 7.79380 8.76371 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.022054 B = 0.002636 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.305516 B =10618.447463 C =11028.025446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.122 4.122 5 C 0.098 3.902 6 C -0.128 4.128 7 C -0.124 4.124 8 C -0.126 4.126 9 C 0.043 3.957 10 N -0.529 5.529 11 C 0.112 3.888 12 C -0.150 4.150 13 C -0.059 4.059 14 C -0.204 4.204 15 C 0.113 3.887 16 O -0.233 6.233 17 C -0.413 4.413 18 H 0.099 0.901 19 C -0.023 4.023 20 N -0.922 5.922 21 Si 1.018 2.982 22 H -0.257 1.257 23 H -0.271 1.271 24 H -0.258 1.258 25 C -0.242 4.242 26 C -0.052 4.052 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.088 0.912 46 H 0.048 0.952 47 H 0.139 0.861 48 H 0.111 0.889 49 H 0.273 0.727 50 H 0.116 0.884 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 12.826 24.029 28.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.161 4.161 5 C 0.009 3.991 6 C -0.185 4.185 7 C -0.162 4.162 8 C -0.164 4.164 9 C -0.085 4.085 10 N -0.253 5.253 11 C -0.015 4.015 12 C -0.151 4.151 13 C -0.078 4.078 14 C -0.223 4.223 15 C 0.063 3.937 16 O -0.140 6.140 17 C -0.489 4.489 18 H 0.116 0.884 19 C -0.220 4.220 20 N -0.560 5.560 21 Si 0.837 3.163 22 H -0.181 1.181 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.261 4.261 26 C -0.071 4.071 27 H 0.066 0.934 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.066 0.934 47 H 0.157 0.843 48 H 0.129 0.871 49 H 0.082 0.918 50 H 0.134 0.866 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.302 12.256 23.604 27.580 hybrid contribution 0.410 -0.021 -0.972 1.056 sum -6.892 12.235 22.631 26.634 Atomic orbital electron populations 1.22271 0.95027 1.03103 1.01462 1.21100 0.96165 0.95885 0.97803 1.21863 1.00750 0.96048 1.01764 1.22287 1.01211 0.93961 0.98591 1.21826 0.95704 0.92230 0.89309 1.22056 0.94400 1.00663 1.01429 1.22920 0.98720 0.96882 0.97704 1.22725 1.01361 0.98233 0.94119 1.23012 0.91553 0.98113 0.95792 1.63599 1.27859 1.25916 1.07899 1.21036 1.00284 0.92327 0.87861 1.19652 0.92650 1.04996 0.97804 1.20817 0.96671 0.95592 0.94707 1.20402 0.97736 1.07294 0.96877 1.19918 0.94415 0.91981 0.87404 1.83946 1.38952 1.65634 1.25488 1.21747 0.94345 1.31770 1.01047 0.88358 1.26587 1.00802 0.94882 0.99776 1.70181 1.24764 1.31556 1.29488 0.84663 0.76169 0.79225 0.76257 1.18142 1.19523 1.18211 1.21238 0.95606 1.07797 1.01479 1.20856 0.99377 0.95052 0.91813 0.93438 0.90774 0.92611 0.90406 0.93199 0.92177 0.92921 0.91731 0.92117 0.93089 0.93717 0.90181 0.90839 0.89510 0.91259 0.89842 0.92648 0.93469 0.89398 0.93388 0.84329 0.87083 0.91842 0.86629 0.84934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.49 71.98 0.61 -1.30 16 2 C -0.09 -1.11 2.60 -10.79 -0.03 -1.13 16 3 C -0.15 -1.73 9.07 71.98 0.65 -1.08 16 4 C -0.12 -1.88 2.60 30.60 0.08 -1.80 16 5 C 0.10 1.69 0.90 3.87 0.00 1.69 16 6 C -0.13 -2.14 7.14 71.98 0.51 -1.62 16 7 C -0.12 -1.78 4.59 31.86 0.15 -1.64 16 8 C -0.13 -2.16 7.08 32.07 0.23 -1.93 16 9 C 0.04 0.97 5.62 86.77 0.49 1.46 16 10 N -0.53 -12.23 4.78 -841.00 -4.02 -16.25 16 11 C 0.11 2.73 3.84 85.56 0.33 3.05 16 12 C -0.15 -4.86 5.09 -19.83 -0.10 -4.97 16 13 C -0.06 -2.06 8.92 22.25 0.20 -1.86 16 14 C -0.20 -8.97 9.99 22.39 0.22 -8.74 16 15 C 0.11 5.82 6.64 22.58 0.15 5.97 16 16 O -0.23 -14.45 9.76 -22.71 -0.22 -14.67 16 17 C -0.41 -24.67 9.43 67.92 0.64 -24.03 16 18 H 0.10 5.42 5.32 -2.91 -0.02 5.40 16 19 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 20 N -0.92 -57.62 13.67 21.61 0.30 -57.32 16 21 Si 1.02 43.71 29.55 68.60 2.03 45.74 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 23 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 24 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 25 C -0.24 -11.00 9.13 22.39 0.20 -10.79 16 26 C -0.05 -1.91 9.69 22.25 0.22 -1.70 16 27 H 0.05 0.62 7.93 -2.39 -0.02 0.60 16 28 H 0.07 0.84 4.40 -2.39 -0.01 0.83 16 29 H 0.05 0.58 8.12 -2.39 -0.02 0.57 16 30 H 0.08 0.88 6.49 -2.39 -0.02 0.86 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 34 H 0.06 1.10 6.20 -2.39 -0.01 1.09 16 35 H 0.06 0.99 6.59 -2.39 -0.02 0.97 16 36 H 0.05 0.90 7.72 -2.39 -0.02 0.88 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 1.01 5.62 -2.39 -0.01 1.00 16 39 H 0.07 0.98 7.71 -2.39 -0.02 0.97 16 40 H 0.09 1.02 7.57 -2.39 -0.02 1.00 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.03 7.00 -2.39 -0.02 1.01 16 45 H 0.09 2.00 6.07 -2.39 -0.01 1.98 16 46 H 0.05 1.07 6.70 -2.38 -0.02 1.05 16 47 H 0.14 3.87 7.49 -2.91 -0.02 3.85 16 48 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 49 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 50 H 0.12 5.37 5.73 -2.91 -0.02 5.35 16 51 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -69.87 383.47 4.00 -65.86 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.90 Total: 27.95 kcal Atomic # 6 Polarization: -56.33 SS G_CDS: 5.02 Total: -51.31 kcal Atomic # 7 Polarization: -69.85 SS G_CDS: -3.72 Total: -73.57 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.22 Total: -14.67 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -69.87 4.00 -65.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001618069264.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.239 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds