Wall clock time and date at job start Tue Mar 31 2020 12:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47121 * 2 1 4 4 C 1.50704 * 109.46695 * 120.00078 * 2 1 3 5 5 C 1.38261 * 119.99857 * 299.99884 * 4 2 1 6 6 C 1.38211 * 119.99521 * 180.02562 * 5 4 2 7 7 C 1.38255 * 120.00280 * 359.95302 * 6 5 4 8 8 C 1.50704 * 119.99944 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.47018 * 260.00056 * 8 7 6 10 10 C 1.47957 * 111.00079 * 170.00106 * 9 8 7 11 11 C 1.53937 * 86.18208 * 222.41605 * 10 9 8 12 12 O 1.42896 * 113.73148 * 269.25755 * 11 10 9 13 13 C 1.50694 * 113.73443 * 138.07827 * 11 10 9 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 11 10 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 11 10 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.47958 * 111.00224 * 70.63784 * 9 8 7 22 22 C 1.38213 * 119.99804 * 0.27878 * 7 6 5 23 23 C 1.50705 * 119.99571 * 179.72371 * 22 7 6 24 24 C 1.53008 * 109.46678 * 119.99864 * 23 22 7 25 25 C 1.52998 * 109.47244 * 239.99563 * 23 22 7 26 26 C 1.38207 * 120.00030 * 119.97793 * 4 2 1 27 27 H 1.09006 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47419 * 300.00119 * 1 2 3 29 29 H 1.08997 * 109.47145 * 59.99909 * 1 2 3 30 30 H 1.08996 * 109.46653 * 239.99509 * 2 1 3 31 31 H 1.08993 * 109.47023 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47185 * 300.00067 * 3 2 1 33 33 H 1.09002 * 109.47071 * 59.99668 * 3 2 1 34 34 H 1.07996 * 119.99993 * 359.97438 * 5 4 2 35 35 H 1.08009 * 119.99665 * 179.97438 * 6 5 4 36 36 H 1.08997 * 109.47128 * 140.00100 * 8 7 6 37 37 H 1.08999 * 109.47288 * 19.99358 * 8 7 6 38 38 H 1.08999 * 113.76060 * 108.09601 * 10 9 8 39 39 H 1.09001 * 113.85944 * 336.74419 * 10 9 8 40 40 H 0.96709 * 114.00030 * 178.09403 * 12 11 10 41 41 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 42 42 H 1.09003 * 113.76031 * 23.26533 * 21 9 8 43 43 H 1.08999 * 113.76380 * 251.90073 * 21 9 8 44 44 H 1.08999 * 109.47303 * 0.02562 * 23 22 7 45 45 H 1.08999 * 109.46785 * 60.00257 * 24 23 22 46 46 H 1.09003 * 109.46816 * 179.97438 * 24 23 22 47 47 H 1.09003 * 109.47280 * 299.99658 * 24 23 22 48 48 H 1.08997 * 109.47032 * 300.01005 * 25 23 22 49 49 H 1.09007 * 109.46566 * 60.00409 * 25 23 22 50 50 H 1.09003 * 109.47211 * 180.02562 * 25 23 22 51 51 H 1.08005 * 119.99772 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6982 -0.2381 2.4862 6 6 2.1593 -0.8894 3.6147 7 6 2.9537 -2.0138 3.4879 8 6 3.4559 -2.7242 4.7184 9 7 4.8464 -2.3283 4.9791 10 6 5.2967 -2.8137 6.3023 11 6 5.9506 -1.4305 6.4725 12 8 7.3015 -1.3723 6.0103 13 6 5.7747 -0.8416 7.8484 14 1 5.2300 -1.3880 8.6042 15 6 6.3092 0.3949 8.1425 16 7 6.9729 1.0601 7.2224 17 14 6.0905 1.1252 9.8479 18 1 6.7544 2.4523 9.9069 19 1 4.6425 1.2823 10.1371 20 1 6.7013 0.2215 10.8554 21 6 4.9199 -0.9264 5.4463 22 6 3.2916 -2.4831 2.2326 23 6 4.1627 -3.7051 2.0944 24 6 3.4029 -4.7888 1.3266 25 6 5.4377 -3.3390 1.3321 26 6 2.8264 -1.8345 1.1038 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.0777 0.6403 2.5853 35 1 1.8986 -0.5201 4.5957 36 1 3.4084 -3.8017 4.5607 37 1 2.8351 -2.4542 5.5727 38 1 6.0122 -3.6342 6.2489 39 1 4.4831 -3.0039 7.0024 40 1 7.7066 -0.4977 6.0885 41 1 7.3486 1.9302 7.4293 42 1 3.9949 -0.5638 5.8947 43 1 5.3344 -0.2389 4.7090 44 1 4.4251 -4.0781 3.0844 45 1 3.1401 -4.4161 0.3366 46 1 4.0331 -5.6725 1.2263 47 1 2.4945 -5.0497 1.8697 48 1 5.1748 -2.9662 0.3422 49 1 5.9789 -2.5669 1.8791 50 1 6.0676 -4.2230 1.2318 51 1 3.0874 -2.2034 0.1228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642834252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:11 Heat of formation + Delta-G solvation = -17.099839 kcal Electronic energy + Delta-G solvation = -27737.021097 eV Core-core repulsion = 24215.192967 eV Total energy + Delta-G solvation = -3521.828130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.07196 -38.68091 -36.39527 -34.58244 -33.97256 -32.04635 -31.02566 -29.62927 -27.63583 -27.22053 -26.92475 -25.61500 -25.02000 -23.42380 -22.86987 -21.22200 -20.57034 -18.74569 -18.52466 -17.22920 -16.39697 -15.63546 -15.12323 -14.98343 -14.73937 -14.54078 -14.14873 -13.85915 -13.84674 -13.59349 -13.38278 -13.29357 -13.09018 -12.71255 -12.40533 -12.38144 -12.14032 -11.97974 -11.85134 -11.69168 -11.53528 -11.37165 -11.22526 -11.14359 -10.94797 -10.86308 -10.82803 -10.76297 -10.56109 -10.40666 -10.29487 -10.03441 -9.90331 -9.32939 -8.64021 -8.46357 -8.27685 -8.04033 -7.75726 -6.24154 -4.34111 1.61434 1.68981 3.21213 3.26837 3.29125 3.95806 4.26675 4.65366 4.77171 4.89485 4.94665 5.02295 5.09445 5.13735 5.24470 5.29154 5.41643 5.43192 5.49610 5.52571 5.59405 5.70001 5.73989 5.79149 5.80668 5.87219 5.89086 5.91622 5.99083 6.02682 6.07173 6.10643 6.12431 6.17289 6.23882 6.32961 6.35310 6.37535 6.48398 6.52627 6.58796 6.72182 6.78268 6.84378 7.05002 7.10219 7.23226 7.31533 7.39061 7.78309 8.00640 8.04415 8.67097 9.35790 9.68442 10.81410 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.013677 B = 0.003830 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.677485 B = 7309.832230 C = 8459.422978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.083 4.083 5 C -0.121 4.121 6 C -0.107 4.107 7 C -0.068 4.068 8 C 0.054 3.946 9 N -0.467 5.467 10 C 0.006 3.994 11 C 0.245 3.755 12 O -0.572 6.572 13 C -0.539 4.539 14 H 0.064 0.936 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.902 3.098 18 H -0.285 1.285 19 H -0.276 1.276 20 H -0.274 1.274 21 C -0.006 4.006 22 C -0.050 4.050 23 C -0.059 4.059 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.117 4.117 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.388 0.612 41 H 0.271 0.729 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.046 0.954 49 H 0.065 0.935 50 H 0.052 0.948 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.752 -4.162 -13.341 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.083 4.083 5 C -0.139 4.139 6 C -0.125 4.125 7 C -0.068 4.068 8 C -0.074 4.074 9 N -0.189 5.189 10 C -0.123 4.123 11 C 0.204 3.796 12 O -0.384 6.384 13 C -0.577 4.577 14 H 0.082 0.918 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.729 3.271 18 H -0.210 1.210 19 H -0.201 1.201 20 H -0.200 1.200 21 C -0.135 4.135 22 C -0.051 4.051 23 C -0.077 4.077 24 C -0.200 4.200 25 C -0.193 4.193 26 C -0.135 4.135 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.243 0.757 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.071 0.929 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.412 -4.825 -14.090 18.172 hybrid contribution -0.674 1.402 1.732 2.327 sum -11.085 -3.423 -12.359 16.951 Atomic orbital electron populations 1.21847 0.94677 1.01785 1.01654 1.20073 0.95632 0.95991 0.95519 1.21853 1.01469 0.95177 1.01633 1.19707 0.98411 0.95894 0.94328 1.20802 1.01197 0.99980 0.91919 1.21036 0.97873 0.95156 0.98448 1.19657 0.96943 0.95882 0.94332 1.21607 0.92675 0.99079 0.94007 1.68667 1.15408 1.07515 1.27343 1.24164 0.98536 1.00209 0.89369 1.19725 0.80623 0.88962 0.90304 1.86034 1.26850 1.38892 1.86603 1.21633 1.35371 1.02960 0.97739 0.91822 1.25039 0.94008 0.96397 0.97532 1.69344 1.36253 1.14660 1.33514 0.86500 0.78465 0.78247 0.83897 1.21017 1.20114 1.19970 1.24616 1.00530 0.89756 0.98565 1.19607 0.96670 0.96675 0.92117 1.20163 0.94047 0.92356 1.01174 1.21872 0.99975 0.98180 0.99933 1.21752 0.96639 1.01671 0.99286 1.20763 0.98953 0.95889 0.97920 0.92691 0.92482 0.92728 0.90884 0.92418 0.92732 0.92430 0.86741 0.86481 0.90749 0.94116 0.90714 0.91866 0.75687 0.91874 0.92551 0.91315 0.89025 0.92978 0.92690 0.93005 0.93512 0.91597 0.92942 0.86752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.01 37.16 0.33 -0.96 16 2 C -0.05 -0.56 3.09 -91.77 -0.28 -0.85 16 3 C -0.14 -1.46 9.01 37.16 0.33 -1.12 16 4 C -0.08 -1.09 4.78 -104.62 -0.50 -1.59 16 5 C -0.12 -1.69 8.71 -39.58 -0.34 -2.03 16 6 C -0.11 -1.67 9.48 -39.59 -0.38 -2.05 16 7 C -0.07 -1.11 4.97 -104.62 -0.52 -1.63 16 8 C 0.05 0.94 4.06 -4.97 -0.02 0.92 16 9 N -0.47 -9.56 6.09 -239.69 -1.46 -11.03 16 10 C 0.01 0.13 7.36 -2.77 -0.02 0.11 16 11 C 0.25 6.20 1.44 -90.84 -0.13 6.07 16 12 O -0.57 -15.56 13.48 -35.23 -0.47 -16.03 16 13 C -0.54 -14.40 8.62 -34.44 -0.30 -14.69 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 16 N -0.90 -24.20 11.09 55.43 0.61 -23.58 16 17 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 21 C -0.01 -0.13 6.70 -2.77 -0.02 -0.15 16 22 C -0.05 -0.75 4.78 -104.62 -0.50 -1.25 16 23 C -0.06 -0.82 2.89 -91.77 -0.27 -1.09 16 24 C -0.14 -1.61 9.00 37.16 0.33 -1.28 16 25 C -0.14 -1.87 9.01 37.16 0.33 -1.54 16 26 C -0.12 -1.60 8.34 -39.59 -0.33 -1.93 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.52 7.39 -51.93 -0.38 0.14 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.71 7.88 -51.93 -0.41 0.31 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.59 7.39 -51.93 -0.38 0.21 16 34 H 0.11 1.40 7.10 -52.49 -0.37 1.03 16 35 H 0.12 1.80 8.04 -52.48 -0.42 1.38 16 36 H 0.07 1.18 6.71 -51.93 -0.35 0.83 16 37 H 0.04 0.71 7.55 -51.93 -0.39 0.31 16 38 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.06 1.29 7.75 -51.93 -0.40 0.88 16 40 H 0.39 10.77 6.46 45.56 0.29 11.07 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.06 1.30 7.73 -51.93 -0.40 0.90 16 43 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.09 1.42 5.57 -51.93 -0.29 1.13 16 45 H 0.05 0.55 7.38 -51.93 -0.38 0.16 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.05 0.57 7.40 -51.93 -0.38 0.19 16 49 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 50 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.11 1.38 6.99 -52.48 -0.37 1.01 16 LS Contribution 397.05 15.07 5.98 5.98 Total: -1.00 -27.50 397.05 -11.14 -38.64 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -8.42 Total: 13.83 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -2.36 Total: -23.25 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: -0.85 Total: -34.61 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.47 Total: -16.03 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -27.50 -11.14 -38.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642834252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.540 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds