Wall clock time and date at job start Tue Mar 31 2020 12:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 5 5 C 1.38245 * 119.99431 * 59.73158 * 4 2 1 6 6 C 1.38235 * 119.99500 * 179.81133 * 5 4 2 7 7 C 1.38234 * 120.00167 * 0.41243 * 6 5 4 8 8 C 1.50697 * 120.00124 * 179.79135 * 7 6 5 9 9 C 1.52992 * 109.47391 * 270.02535 * 8 7 6 10 10 H 1.08997 * 110.27665 * 52.91129 * 9 8 7 11 11 C 1.54603 * 110.31057 * 290.71466 * 9 8 7 12 12 C 1.54934 * 102.92377 * 219.12293 * 11 9 8 13 13 N 1.48542 * 103.22597 * 37.41562 * 12 11 9 14 14 C 1.46895 * 110.99834 * 200.27821 * 13 12 11 15 15 C 1.53000 * 109.47319 * 287.39464 * 14 13 12 16 16 H 1.09003 * 109.47196 * 59.99649 * 15 14 13 17 17 O 1.42908 * 109.47052 * 300.00454 * 15 14 13 18 18 C 1.50697 * 109.47554 * 180.02562 * 15 14 13 19 19 H 1.07998 * 119.99861 * 0.02562 * 18 15 14 20 20 C 1.37879 * 120.00247 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99679 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 119.99957 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47093 * 90.00123 * 22 20 18 24 24 H 1.48492 * 109.47215 * 209.99944 * 22 20 18 25 25 H 1.48499 * 109.47169 * 330.00271 * 22 20 18 26 26 C 1.47903 * 105.81691 * 320.79085 * 13 12 11 27 27 C 1.38237 * 119.99794 * 359.81822 * 7 6 5 28 28 C 1.38228 * 120.00126 * 240.00037 * 4 2 1 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 35 35 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 36 36 H 1.07995 * 119.99936 * 359.97438 * 5 4 2 37 37 H 1.07995 * 120.00067 * 180.20766 * 6 5 4 38 38 H 1.08996 * 109.47038 * 30.02997 * 8 7 6 39 39 H 1.09004 * 109.47081 * 150.02624 * 8 7 6 40 40 H 1.08997 * 110.72221 * 337.48877 * 11 9 8 41 41 H 1.09004 * 110.72142 * 100.76414 * 11 9 8 42 42 H 1.08995 * 110.67324 * 278.97990 * 12 11 9 43 43 H 1.09000 * 110.81105 * 155.91164 * 12 11 9 44 44 H 1.09000 * 109.47408 * 47.39898 * 14 13 12 45 45 H 1.08998 * 109.47006 * 167.39841 * 14 13 12 46 46 H 0.96704 * 113.99746 * 299.99939 * 17 15 14 47 47 H 0.97001 * 119.99543 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.91738 * 265.97533 * 26 13 12 49 49 H 1.09008 * 110.07896 * 144.77465 * 26 13 12 50 50 H 1.08009 * 119.99869 * 179.97438 * 27 7 6 51 51 H 1.07992 * 120.00101 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6938 -0.2414 -2.4860 6 6 2.1578 -0.8908 -3.6146 7 6 2.9533 -2.0142 -3.4878 8 6 3.4552 -2.7248 -4.7182 9 6 2.4476 -3.7984 -5.1339 10 1 1.4526 -3.3646 -5.2326 11 6 2.4334 -4.9494 -4.1018 12 6 2.2930 -6.2104 -4.9909 13 7 3.1240 -5.8836 -6.1779 14 6 2.7503 -6.7177 -7.3279 15 6 3.2430 -8.1484 -7.1018 16 1 2.7870 -8.5511 -6.1974 17 8 4.6648 -8.1453 -6.9575 18 6 2.8603 -9.0040 -8.2818 19 1 2.3199 -8.5706 -9.1104 20 6 3.2007 -10.3399 -8.3041 21 7 3.8600 -10.8673 -7.2957 22 14 2.7256 -11.4006 -9.7665 23 1 3.8112 -11.3625 -10.7791 24 1 2.5178 -12.8002 -9.3161 25 1 1.4702 -10.8822 -10.3669 26 6 2.8794 -4.4523 -6.4595 27 6 3.2879 -2.4859 -2.2323 28 6 2.8271 -1.8343 -1.1035 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.0690 0.6339 -2.5850 37 1 1.8961 -0.5224 -4.5955 38 1 3.5759 -2.0064 -5.5290 39 1 4.4157 -3.1925 -4.5013 40 1 3.3672 -4.9754 -3.5402 41 1 1.5805 -4.8543 -3.4297 42 1 1.2532 -6.3638 -5.2797 43 1 2.6826 -7.0905 -4.4792 44 1 1.6659 -6.7200 -7.4380 45 1 3.2064 -6.3150 -8.2323 46 1 5.1375 -7.7990 -7.7267 47 1 4.0992 -11.8073 -7.3113 48 1 2.0861 -4.3498 -7.1999 49 1 3.7920 -3.9817 -6.8257 50 1 3.9091 -3.3639 -2.1331 51 1 3.0883 -2.2030 -0.1227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646316645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:43 Heat of formation + Delta-G solvation = -48.162949 kcal Electronic energy + Delta-G solvation = -26165.228296 eV Core-core repulsion = 22642.053168 eV Total energy + Delta-G solvation = -3523.175128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.00722 -38.69149 -36.22858 -35.34007 -33.01562 -32.03023 -31.10114 -30.35255 -28.87292 -27.77612 -27.47383 -25.63054 -24.13779 -23.00035 -22.22133 -21.40582 -20.12197 -19.88519 -19.78509 -16.94482 -16.69679 -15.74759 -15.58035 -15.08704 -14.88516 -14.54288 -14.27872 -14.17744 -13.96684 -13.93764 -13.80912 -13.49888 -13.39492 -12.93552 -12.75407 -12.67992 -12.42384 -12.35259 -11.92686 -11.75568 -11.51354 -11.41405 -11.38468 -11.09332 -10.99538 -10.90215 -10.86853 -10.74038 -10.60518 -10.52862 -10.41933 -10.26923 -10.00874 -9.00999 -8.94219 -8.57380 -8.54051 -8.04772 -7.66228 -5.96929 -4.15302 1.23400 1.31114 3.29102 3.35976 3.38475 3.62840 4.37592 4.38479 4.49610 4.61370 4.67525 4.79902 4.87137 4.90095 4.96890 4.98518 5.13868 5.20782 5.28042 5.30151 5.31036 5.35687 5.48714 5.53679 5.60497 5.61352 5.65736 5.66889 5.80586 5.87776 5.89861 5.90108 5.95874 6.02846 6.08578 6.09678 6.13164 6.21512 6.34236 6.36340 6.44464 6.49957 6.52047 6.60745 6.63510 6.86461 6.92084 7.45416 7.66346 7.80707 7.92024 8.24774 8.88863 9.50656 9.67548 11.07129 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.036385 B = 0.002032 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.370519 B =13779.046054 C =13894.958177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.086 4.086 5 C -0.115 4.115 6 C -0.117 4.117 7 C -0.076 4.076 8 C -0.071 4.071 9 C -0.090 4.090 10 H 0.069 0.931 11 C -0.114 4.114 12 C 0.038 3.962 13 N -0.503 5.503 14 C 0.022 3.978 15 C 0.240 3.760 16 H 0.052 0.948 17 O -0.554 6.554 18 C -0.574 4.574 19 H 0.054 0.946 20 C 0.079 3.921 21 N -0.858 5.858 22 Si 0.889 3.111 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.037 3.963 27 C -0.110 4.110 28 C -0.117 4.117 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.083 0.917 44 H 0.027 0.973 45 H 0.061 0.939 46 H 0.342 0.658 47 H 0.260 0.740 48 H 0.036 0.964 49 H 0.073 0.927 50 H 0.123 0.877 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.565 23.733 12.861 27.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.133 4.133 6 C -0.135 4.135 7 C -0.076 4.076 8 C -0.109 4.109 9 C -0.109 4.109 10 H 0.088 0.912 11 C -0.152 4.152 12 C -0.090 4.090 13 N -0.227 5.227 14 C -0.106 4.106 15 C 0.182 3.818 16 H 0.070 0.930 17 O -0.355 6.355 18 C -0.613 4.613 19 H 0.072 0.928 20 C -0.127 4.127 21 N -0.494 5.494 22 Si 0.716 3.284 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.091 4.091 27 C -0.128 4.128 28 C -0.135 4.135 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.102 0.898 44 H 0.045 0.955 45 H 0.079 0.921 46 H 0.184 0.816 47 H 0.070 0.930 48 H 0.054 0.946 49 H 0.092 0.908 50 H 0.141 0.859 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.096 23.205 13.625 27.219 hybrid contribution -1.164 -0.319 -1.685 2.072 sum -5.259 22.886 11.941 26.344 Atomic orbital electron populations 1.21857 0.94420 1.02075 1.01776 1.20115 0.95897 0.95968 0.95536 1.21852 1.01225 0.95210 1.01781 1.19796 0.98246 0.96050 0.94510 1.20894 1.00368 1.00009 0.91987 1.21022 0.98238 0.95862 0.98424 1.19940 0.97347 0.95252 0.95047 1.20705 0.98910 0.96869 0.94399 1.21967 0.98321 0.95188 0.95379 0.91237 1.22563 1.01766 0.93865 0.97012 1.23203 0.95389 0.98146 0.92287 1.64817 1.51657 1.01092 1.05107 1.23254 0.97654 0.97904 0.91774 1.19252 0.79635 0.86420 0.96534 0.92993 1.86562 1.19816 1.87074 1.42070 1.21674 1.39235 0.94951 1.05430 0.92824 1.25028 0.94105 0.97844 0.95704 1.70089 1.36677 1.12696 1.29909 0.86684 0.78914 0.79784 0.83030 1.20524 1.21128 1.19936 1.22947 0.99736 0.90871 0.95570 1.21108 1.00173 0.99679 0.91882 1.21038 0.98296 0.95584 0.98541 0.92504 0.92482 0.92520 0.90620 0.92511 0.92527 0.92560 0.86542 0.86345 0.91160 0.90321 0.90819 0.91845 0.94489 0.89816 0.95453 0.92052 0.81552 0.93038 0.94601 0.90818 0.85918 0.86383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.00 37.16 0.33 -0.62 16 2 C -0.06 -0.41 3.09 -91.77 -0.28 -0.69 16 3 C -0.14 -0.91 9.01 37.16 0.33 -0.57 16 4 C -0.09 -0.78 4.78 -104.62 -0.50 -1.28 16 5 C -0.11 -1.05 8.71 -39.58 -0.34 -1.40 16 6 C -0.12 -1.16 9.70 -39.58 -0.38 -1.55 16 7 C -0.08 -0.81 4.93 -104.63 -0.52 -1.32 16 8 C -0.07 -0.78 4.52 -27.89 -0.13 -0.90 16 9 C -0.09 -1.12 2.98 -89.26 -0.27 -1.39 16 10 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 11 C -0.11 -1.55 5.75 -24.87 -0.14 -1.70 16 12 C 0.04 0.65 5.91 -1.89 -0.01 0.64 16 13 N -0.50 -9.35 5.11 -230.45 -1.18 -10.52 16 14 C 0.02 0.47 4.31 -3.83 -0.02 0.45 16 15 C 0.24 6.20 2.86 -27.88 -0.08 6.12 16 16 H 0.05 1.48 7.37 -51.93 -0.38 1.10 16 17 O -0.55 -14.77 12.59 -35.23 -0.44 -15.22 16 18 C -0.57 -16.01 8.76 -34.44 -0.30 -16.31 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 20 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 21 N -0.86 -25.72 12.84 55.43 0.71 -25.01 16 22 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 26 C 0.04 0.55 6.32 -2.75 -0.02 0.54 16 27 C -0.11 -1.16 8.98 -39.58 -0.36 -1.51 16 28 C -0.12 -1.13 9.67 -39.59 -0.38 -1.51 16 29 H 0.06 0.37 7.37 -51.93 -0.38 -0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.52 7.88 -51.93 -0.41 0.11 16 33 H 0.06 0.35 7.41 -51.93 -0.38 -0.03 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.12 0.89 7.10 -52.49 -0.37 0.52 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.08 0.91 7.94 -51.93 -0.41 0.49 16 40 H 0.07 0.99 6.96 -51.93 -0.36 0.63 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 43 H 0.08 1.59 7.80 -51.93 -0.40 1.18 16 44 H 0.03 0.58 7.83 -51.93 -0.41 0.17 16 45 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 46 H 0.34 8.21 9.04 45.56 0.41 8.62 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.04 0.53 7.77 -51.93 -0.40 0.13 16 49 H 0.07 1.05 7.68 -51.92 -0.40 0.65 16 50 H 0.12 1.23 7.39 -52.48 -0.39 0.84 16 51 H 0.12 0.96 7.95 -52.49 -0.42 0.54 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -30.96 400.52 -11.51 -42.47 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.46 Total: 6.75 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: -3.16 Total: -20.85 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.47 Total: -35.53 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.44 Total: -15.22 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.96 -11.51 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646316645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.698 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds