Wall clock time and date at job start Tue Mar 31 2020 12:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.50698 * 109.47184 * 239.99667 * 2 1 3 5 5 C 1.38245 * 119.99431 * 59.73158 * 4 2 1 6 6 C 1.38235 * 119.99500 * 179.81133 * 5 4 2 7 7 C 1.38234 * 120.00167 * 0.41243 * 6 5 4 8 8 C 1.50697 * 120.00124 * 179.79135 * 7 6 5 9 9 C 1.52992 * 109.47391 * 270.02535 * 8 7 6 10 10 H 1.08997 * 110.27665 * 52.91129 * 9 8 7 11 11 C 1.54603 * 110.31057 * 290.71466 * 9 8 7 12 12 C 1.54934 * 102.92377 * 219.12293 * 11 9 8 13 13 N 1.48542 * 103.22597 * 37.41562 * 12 11 9 14 14 C 1.46895 * 110.99834 * 200.27821 * 13 12 11 15 15 C 1.53000 * 109.47319 * 287.39464 * 14 13 12 16 16 H 1.09003 * 109.47196 * 59.99649 * 15 14 13 17 17 O 1.42908 * 109.47052 * 300.00454 * 15 14 13 18 18 C 1.50697 * 109.47554 * 180.02562 * 15 14 13 19 19 H 1.07998 * 119.99861 * 0.02562 * 18 15 14 20 20 C 1.37879 * 120.00247 * 179.97438 * 18 15 14 21 21 N 1.31516 * 119.99679 * 359.97438 * 20 18 15 22 22 Si 1.86796 * 119.99957 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.47093 * 90.00123 * 22 20 18 24 24 H 1.48492 * 109.47215 * 209.99944 * 22 20 18 25 25 H 1.48499 * 109.47169 * 330.00271 * 22 20 18 26 26 C 1.47903 * 105.81691 * 320.79085 * 13 12 11 27 27 C 1.38237 * 119.99794 * 359.81822 * 7 6 5 28 28 C 1.38228 * 120.00126 * 240.00037 * 4 2 1 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 35 35 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 36 36 H 1.07995 * 119.99936 * 359.97438 * 5 4 2 37 37 H 1.07995 * 120.00067 * 180.20766 * 6 5 4 38 38 H 1.08996 * 109.47038 * 30.02997 * 8 7 6 39 39 H 1.09004 * 109.47081 * 150.02624 * 8 7 6 40 40 H 1.08997 * 110.72221 * 337.48877 * 11 9 8 41 41 H 1.09004 * 110.72142 * 100.76414 * 11 9 8 42 42 H 1.08995 * 110.67324 * 278.97990 * 12 11 9 43 43 H 1.09000 * 110.81105 * 155.91164 * 12 11 9 44 44 H 1.09000 * 109.47408 * 47.39898 * 14 13 12 45 45 H 1.08998 * 109.47006 * 167.39841 * 14 13 12 46 46 H 0.96704 * 113.99746 * 299.99939 * 17 15 14 47 47 H 0.97001 * 119.99543 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.91738 * 265.97533 * 26 13 12 49 49 H 1.09008 * 110.07896 * 144.77465 * 26 13 12 50 50 H 1.08009 * 119.99869 * 179.97438 * 27 7 6 51 51 H 1.07992 * 120.00101 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6938 -0.2414 -2.4860 6 6 2.1578 -0.8908 -3.6146 7 6 2.9533 -2.0142 -3.4878 8 6 3.4552 -2.7248 -4.7182 9 6 2.4476 -3.7984 -5.1339 10 1 1.4526 -3.3646 -5.2326 11 6 2.4334 -4.9494 -4.1018 12 6 2.2930 -6.2104 -4.9909 13 7 3.1240 -5.8836 -6.1779 14 6 2.7503 -6.7177 -7.3279 15 6 3.2430 -8.1484 -7.1018 16 1 2.7870 -8.5511 -6.1974 17 8 4.6648 -8.1453 -6.9575 18 6 2.8603 -9.0040 -8.2818 19 1 2.3199 -8.5706 -9.1104 20 6 3.2007 -10.3399 -8.3041 21 7 3.8600 -10.8673 -7.2957 22 14 2.7256 -11.4006 -9.7665 23 1 3.8112 -11.3625 -10.7791 24 1 2.5178 -12.8002 -9.3161 25 1 1.4702 -10.8822 -10.3669 26 6 2.8794 -4.4523 -6.4595 27 6 3.2879 -2.4859 -2.2323 28 6 2.8271 -1.8343 -1.1035 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.0690 0.6339 -2.5850 37 1 1.8961 -0.5224 -4.5955 38 1 3.5759 -2.0064 -5.5290 39 1 4.4157 -3.1925 -4.5013 40 1 3.3672 -4.9754 -3.5402 41 1 1.5805 -4.8543 -3.4297 42 1 1.2532 -6.3638 -5.2797 43 1 2.6826 -7.0905 -4.4792 44 1 1.6659 -6.7200 -7.4380 45 1 3.2064 -6.3150 -8.2323 46 1 5.1375 -7.7990 -7.7267 47 1 4.0992 -11.8073 -7.3113 48 1 2.0861 -4.3498 -7.1999 49 1 3.7920 -3.9817 -6.8257 50 1 3.9091 -3.3639 -2.1331 51 1 3.0883 -2.2030 -0.1227 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646316645.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:42 Heat of formation + Delta-G solvation = -66.130447 kcal Electronic energy + Delta-G solvation = -26166.007425 eV Core-core repulsion = 22642.053168 eV Total energy + Delta-G solvation = -3523.954257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.83084 -39.89331 -37.65619 -36.55762 -34.29476 -34.08734 -31.89994 -31.49212 -30.03575 -29.45907 -27.96039 -26.92824 -25.68298 -23.75997 -23.22271 -22.82173 -21.53395 -20.91034 -20.72195 -19.03492 -17.49517 -16.82353 -16.69315 -16.50699 -16.22036 -16.00311 -15.93456 -15.53917 -14.95364 -14.84919 -14.62868 -14.46170 -14.37891 -14.30610 -13.93265 -13.65835 -13.52847 -13.23326 -13.17236 -12.91223 -12.84170 -12.76932 -12.65753 -12.43995 -12.15908 -12.11124 -12.00969 -11.95579 -11.89114 -11.64926 -11.51959 -11.42777 -11.32976 -10.97980 -10.71271 -10.08303 -9.73953 -9.31117 -9.18229 -8.13381 -6.40007 0.50018 0.58141 1.39822 1.40415 1.51376 2.38008 2.89293 3.11720 3.19160 3.61324 3.77998 3.81913 3.86786 3.96392 4.19083 4.21956 4.23587 4.33403 4.34611 4.35307 4.39824 4.54379 4.55891 4.58689 4.60131 4.66761 4.73786 4.78858 4.82402 4.90810 4.95714 4.99289 5.00206 5.01036 5.05953 5.11792 5.13487 5.16747 5.27234 5.29946 5.37924 5.40430 5.40790 5.59327 5.62771 5.74020 5.81869 5.83816 6.00152 6.15000 6.20577 6.23174 6.73823 7.34346 7.62690 8.91114 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.036385 B = 0.002032 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.370519 B =13779.046054 C =13894.958177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.057 4.057 3 C -0.141 4.141 4 C -0.088 4.088 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.088 4.088 8 C -0.063 4.063 9 C -0.078 4.078 10 H 0.080 0.920 11 C -0.102 4.102 12 C 0.035 3.965 13 N -0.519 5.519 14 C 0.041 3.959 15 C 0.240 3.760 16 H 0.015 0.985 17 O -0.570 6.570 18 C -0.590 4.590 19 H 0.059 0.941 20 C 0.024 3.976 21 N -0.899 5.899 22 Si 0.962 3.038 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.265 1.265 26 C 0.037 3.963 27 C -0.123 4.123 28 C -0.128 4.128 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.034 0.966 43 H 0.055 0.945 44 H 0.025 0.975 45 H 0.068 0.932 46 H 0.352 0.648 47 H 0.261 0.739 48 H 0.040 0.960 49 H 0.083 0.917 50 H 0.120 0.880 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.465 25.733 12.420 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 C -0.198 4.198 4 C -0.088 4.088 5 C -0.137 4.137 6 C -0.141 4.141 7 C -0.088 4.088 8 C -0.100 4.100 9 C -0.097 4.097 10 H 0.099 0.901 11 C -0.140 4.140 12 C -0.093 4.093 13 N -0.243 5.243 14 C -0.088 4.088 15 C 0.182 3.818 16 H 0.033 0.967 17 O -0.373 6.373 18 C -0.628 4.628 19 H 0.077 0.923 20 C -0.178 4.178 21 N -0.536 5.536 22 Si 0.787 3.213 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.189 1.189 26 C -0.091 4.091 27 C -0.141 4.141 28 C -0.146 4.146 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.196 0.804 47 H 0.070 0.930 48 H 0.059 0.941 49 H 0.101 0.899 50 H 0.138 0.862 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.000 25.229 13.179 28.900 hybrid contribution -0.872 -0.904 -1.473 1.935 sum -5.872 24.325 11.707 27.627 Atomic orbital electron populations 1.21843 0.93889 1.01716 1.02493 1.20161 0.96283 0.96346 0.94770 1.21833 1.00846 0.94657 1.02490 1.20065 0.97610 0.95755 0.95376 1.21129 1.00357 1.00432 0.91827 1.21230 0.97913 0.95581 0.99368 1.19933 0.98203 0.95901 0.94758 1.20600 0.97813 0.96512 0.95121 1.21888 0.99394 0.94970 0.93439 0.90142 1.22482 1.02344 0.92339 0.96828 1.23182 0.94708 0.98945 0.92514 1.64709 1.52260 1.02967 1.04413 1.22842 0.97189 0.95628 0.93110 1.19100 0.79202 0.89134 0.94358 0.96745 1.86503 1.20448 1.87517 1.42842 1.22062 1.39043 0.95684 1.05994 0.92300 1.25935 0.93922 0.99343 0.98641 1.70236 1.38113 1.13100 1.32181 0.85524 0.78946 0.77639 0.79237 1.19668 1.20853 1.18939 1.23025 1.00480 0.88484 0.97101 1.21208 1.00568 0.99949 0.92362 1.21245 0.98543 0.95945 0.98865 0.92328 0.93360 0.91299 0.90358 0.92321 0.91330 0.93133 0.84972 0.85014 0.89756 0.91207 0.90853 0.90515 0.94778 0.92688 0.95663 0.91359 0.80398 0.92998 0.94132 0.89905 0.86162 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.00 71.98 0.65 -0.97 16 2 C -0.06 -0.72 3.09 -11.54 -0.04 -0.76 16 3 C -0.14 -1.50 9.01 71.98 0.65 -0.86 16 4 C -0.09 -1.46 4.78 -19.87 -0.09 -1.56 16 5 C -0.12 -1.96 8.71 22.27 0.19 -1.76 16 6 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 7 C -0.09 -1.73 4.93 -19.87 -0.10 -1.83 16 8 C -0.06 -1.26 4.52 29.84 0.13 -1.13 16 9 C -0.08 -1.82 2.98 -9.91 -0.03 -1.85 16 10 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 11 C -0.10 -2.71 5.75 31.80 0.18 -2.53 16 12 C 0.03 1.22 5.91 86.65 0.51 1.73 16 13 N -0.52 -19.35 5.11 -883.01 -4.51 -23.87 16 14 C 0.04 1.74 4.31 86.30 0.37 2.11 16 15 C 0.24 12.78 2.86 29.85 0.09 12.86 16 16 H 0.01 0.88 7.37 -2.39 -0.02 0.86 16 17 O -0.57 -31.22 12.59 -148.98 -1.88 -33.09 16 18 C -0.59 -33.18 8.76 25.60 0.22 -32.96 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 20 C 0.02 1.37 5.40 84.65 0.46 1.82 16 21 N -0.90 -55.03 12.84 21.45 0.28 -54.76 16 22 Si 0.96 43.97 29.54 68.60 2.03 45.99 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.04 1.05 6.32 86.45 0.55 1.59 16 27 C -0.12 -2.47 8.98 22.27 0.20 -2.27 16 28 C -0.13 -2.34 9.67 22.27 0.22 -2.13 16 29 H 0.06 0.64 7.37 -2.39 -0.02 0.62 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.94 7.88 -2.39 -0.02 0.92 16 33 H 0.06 0.60 7.41 -2.39 -0.02 0.58 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.13 1.69 7.10 -2.91 -0.02 1.67 16 37 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 39 H 0.07 1.53 7.94 -2.38 -0.02 1.51 16 40 H 0.07 1.96 6.96 -2.39 -0.02 1.95 16 41 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.03 1.20 7.81 -2.39 -0.02 1.18 16 43 H 0.05 2.22 7.80 -2.39 -0.02 2.20 16 44 H 0.03 1.07 7.83 -2.39 -0.02 1.05 16 45 H 0.07 2.79 8.08 -2.39 -0.02 2.77 16 46 H 0.35 17.20 9.04 -74.05 -0.67 16.53 16 47 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 48 H 0.04 1.13 7.77 -2.39 -0.02 1.11 16 49 H 0.08 2.21 7.68 -2.38 -0.02 2.19 16 50 H 0.12 2.38 7.39 -2.91 -0.02 2.36 16 51 H 0.13 1.97 7.95 -2.91 -0.02 1.95 16 Total: -1.00 -66.73 400.52 0.51 -66.22 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.21 Total: 31.95 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: 4.38 Total: -32.45 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -4.24 Total: -78.63 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.88 Total: -33.09 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.73 0.51 -66.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646316645.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.091 kcal (2) G-P(sol) polarization free energy of solvation -66.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds