Wall clock time and date at job start Tue Mar 31 2020 12:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47068 * 2 1 4 4 C 1.50696 * 109.47511 * 120.00237 * 2 1 3 5 5 C 1.38230 * 120.00309 * 120.00024 * 4 2 1 6 6 C 1.38235 * 120.00326 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00196 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46845 * 90.00215 * 8 7 6 10 10 H 1.09002 * 110.62908 * 305.70038 * 9 8 7 11 11 C 1.55144 * 110.70543 * 68.80711 * 9 8 7 12 12 C 1.55112 * 101.55518 * 153.90539 * 11 9 8 13 13 N 1.47842 * 104.90966 * 323.15689 * 12 11 9 14 14 C 1.46894 * 111.00241 * 146.24048 * 13 12 11 15 15 C 1.53006 * 109.47033 * 69.15751 * 14 13 12 16 16 H 1.09005 * 109.46848 * 60.00382 * 15 14 13 17 17 O 1.42893 * 109.47090 * 300.00072 * 15 14 13 18 18 C 1.50704 * 109.47058 * 179.97438 * 15 14 13 19 19 H 1.07998 * 120.00208 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99766 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00115 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 119.99878 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46915 * 59.99832 * 22 20 18 24 24 H 1.48494 * 109.47282 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47216 * 300.00288 * 22 20 18 26 26 C 1.47445 * 108.56522 * 23.97718 * 13 12 11 27 27 C 1.38240 * 120.00061 * 0.07178 * 7 6 5 28 28 C 1.38234 * 120.00081 * 359.88514 * 27 7 6 29 29 H 1.09002 * 109.46963 * 299.99827 * 1 2 3 30 30 H 1.09001 * 109.47529 * 59.99953 * 1 2 3 31 31 H 1.08999 * 109.47147 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47421 * 240.00448 * 2 1 3 33 33 H 1.09001 * 109.47446 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46984 * 300.00380 * 3 2 1 35 35 H 1.09002 * 109.47087 * 60.00249 * 3 2 1 36 36 H 1.08000 * 120.00376 * 359.97438 * 5 4 2 37 37 H 1.08000 * 120.00616 * 179.72578 * 6 5 4 38 38 H 1.08998 * 109.47268 * 210.00355 * 8 7 6 39 39 H 1.08998 * 109.47151 * 330.00502 * 8 7 6 40 40 H 1.09002 * 110.98993 * 272.12559 * 11 9 8 41 41 H 1.08997 * 110.98701 * 35.94389 * 11 9 8 42 42 H 1.09006 * 110.42310 * 204.23990 * 12 11 9 43 43 H 1.09004 * 110.31554 * 82.01896 * 12 11 9 44 44 H 1.09003 * 109.47759 * 189.15784 * 14 13 12 45 45 H 1.08999 * 109.47408 * 309.16127 * 14 13 12 46 46 H 0.96696 * 114.00312 * 299.99892 * 17 15 14 47 47 H 0.96996 * 120.00179 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.88797 * 239.60596 * 26 13 12 49 49 H 1.08994 * 109.89308 * 118.41907 * 26 13 12 50 50 H 1.08005 * 120.00107 * 179.97438 * 27 7 6 51 51 H 1.07999 * 120.00147 * 180.10835 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8271 -1.8343 1.1035 6 6 3.2884 -2.4856 2.2321 7 6 2.9554 -2.0128 3.4877 8 6 3.4578 -2.7232 4.7182 9 6 4.8062 -2.1315 5.1338 10 1 5.5095 -2.1567 4.3015 11 6 4.6306 -0.6826 5.6600 12 6 5.8521 -0.5456 6.6062 13 7 5.9959 -1.8750 7.2367 14 6 7.4090 -2.1893 7.4862 15 6 7.9468 -1.2775 8.5910 16 1 7.3728 -1.4356 9.5041 17 8 7.8271 0.0867 8.1831 18 6 9.3964 -1.6004 8.8474 19 1 9.8852 -2.3777 8.2790 20 6 10.0984 -0.9033 9.8077 21 7 9.5030 0.0430 10.5002 22 14 11.8954 -1.3029 10.1251 23 1 12.6776 -1.0871 8.8813 24 1 12.4170 -0.4190 11.1982 25 1 12.0199 -2.7209 10.5483 26 6 5.3785 -2.8823 6.3545 27 6 2.1598 -0.8894 3.6146 28 6 1.6992 -0.2375 2.4860 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.0877 -2.2035 0.1226 37 1 3.9057 -3.3663 2.1331 38 1 2.7402 -2.5971 5.5289 39 1 3.5781 -3.7846 4.5013 40 1 4.6824 0.0381 4.8440 41 1 3.6967 -0.5784 6.2124 42 1 5.6630 0.2152 7.3636 43 1 6.7469 -0.2975 6.0354 44 1 7.5004 -3.2299 7.7974 45 1 7.9830 -2.0313 6.5732 46 1 8.3137 0.2998 7.3751 47 1 9.9968 0.5332 11.1760 48 1 4.5758 -3.3962 6.8834 49 1 6.1304 -3.6009 6.0289 50 1 1.8992 -0.5202 4.5956 51 1 1.0791 0.6411 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646316646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:45 Heat of formation + Delta-G solvation = -48.406501 kcal Electronic energy + Delta-G solvation = -26325.408003 eV Core-core repulsion = 22802.222314 eV Total energy + Delta-G solvation = -3523.185689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.00943 -38.72882 -36.28614 -35.34474 -32.94536 -32.06420 -31.05857 -30.46083 -28.78550 -27.79159 -27.46262 -25.66054 -24.09781 -23.13978 -22.07231 -21.08170 -20.29158 -20.02512 -19.86353 -16.91450 -16.59517 -16.05063 -15.34287 -15.10595 -14.91846 -14.55775 -14.26095 -14.17204 -13.95138 -13.90434 -13.81156 -13.51815 -13.29308 -13.14683 -12.72604 -12.63873 -12.30713 -12.24738 -11.96266 -11.80746 -11.59474 -11.38409 -11.35631 -11.16321 -10.97639 -10.90992 -10.85892 -10.80514 -10.64440 -10.52086 -10.35472 -10.26733 -9.97805 -9.02174 -8.94430 -8.59130 -8.53298 -8.05830 -7.57487 -5.96951 -4.15267 1.22001 1.29818 3.30343 3.35691 3.37297 3.61382 4.37715 4.38380 4.49119 4.62793 4.68048 4.78372 4.87494 4.88973 4.96811 5.00532 5.12295 5.26217 5.29478 5.29537 5.30903 5.34464 5.50157 5.52731 5.58733 5.61790 5.66349 5.72112 5.82510 5.85291 5.87671 5.91253 5.94842 6.01743 6.05386 6.12923 6.22427 6.25710 6.33329 6.37093 6.48920 6.51049 6.55509 6.59680 6.74440 6.90394 6.93607 7.60298 7.70948 7.79743 7.99578 8.25263 8.88192 9.43016 9.62079 11.07111 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.002159 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.366398 B =12965.487661 C =13273.899568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.085 4.085 5 C -0.118 4.118 6 C -0.117 4.117 7 C -0.076 4.076 8 C -0.070 4.070 9 C -0.102 4.102 10 H 0.070 0.930 11 C -0.126 4.126 12 C 0.060 3.940 13 N -0.525 5.525 14 C 0.028 3.972 15 C 0.236 3.764 16 H 0.062 0.938 17 O -0.560 6.560 18 C -0.574 4.574 19 H 0.053 0.947 20 C 0.080 3.920 21 N -0.858 5.858 22 Si 0.889 3.111 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.044 3.956 27 C -0.111 4.111 28 C -0.113 4.113 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.021 0.979 46 H 0.338 0.662 47 H 0.260 0.740 48 H 0.070 0.930 49 H 0.047 0.953 50 H 0.121 0.879 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 -1.878 -20.691 27.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.085 4.085 5 C -0.136 4.136 6 C -0.135 4.135 7 C -0.076 4.076 8 C -0.108 4.108 9 C -0.122 4.122 10 H 0.089 0.911 11 C -0.164 4.164 12 C -0.067 4.067 13 N -0.249 5.249 14 C -0.100 4.100 15 C 0.178 3.822 16 H 0.080 0.920 17 O -0.362 6.362 18 C -0.612 4.612 19 H 0.071 0.929 20 C -0.126 4.126 21 N -0.493 5.493 22 Si 0.716 3.284 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.084 4.084 27 C -0.129 4.129 28 C -0.131 4.131 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.058 0.942 44 H 0.083 0.917 45 H 0.039 0.961 46 H 0.181 0.819 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.065 0.935 50 H 0.139 0.861 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.164 -1.719 -19.490 26.698 hybrid contribution 1.977 -0.421 -1.074 2.289 sum -16.187 -2.140 -20.564 26.258 Atomic orbital electron populations 1.21854 0.94443 1.01924 1.01867 1.20113 0.95862 0.96074 0.95435 1.21862 1.01354 0.95092 1.01874 1.19802 0.98245 0.95922 0.94578 1.20997 0.98405 0.95783 0.98382 1.21024 1.00221 1.00201 0.92035 1.19913 0.97000 0.95892 0.94784 1.20610 0.96618 0.98767 0.94773 1.22368 0.95770 0.96195 0.97824 0.91110 1.22901 0.99556 0.95347 0.98577 1.23041 0.95421 0.92394 0.95874 1.63611 1.16935 1.01363 1.42951 1.23229 0.85793 1.01278 0.99721 1.19347 0.93881 0.77883 0.91042 0.92018 1.86612 1.73287 1.30628 1.45662 1.21608 0.96904 1.20982 1.21705 0.92892 1.25024 0.98024 0.94468 0.95133 1.70071 1.36162 1.21140 1.21949 0.86745 0.85388 0.78334 0.77914 1.20250 1.21206 1.20182 1.22911 0.98585 0.95151 0.91728 1.21070 0.97846 0.95374 0.98582 1.20936 1.00369 0.99866 0.91944 0.92429 0.92503 0.92614 0.90708 0.92478 0.92505 0.92382 0.86497 0.86316 0.90659 0.91138 0.91639 0.91193 0.89243 0.94220 0.91687 0.96101 0.81863 0.92980 0.91174 0.93458 0.86052 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.01 37.15 0.33 -0.58 16 2 C -0.06 -0.41 3.09 -91.77 -0.28 -0.69 16 3 C -0.14 -1.00 9.01 37.16 0.33 -0.67 16 4 C -0.09 -0.78 4.78 -104.63 -0.50 -1.28 16 5 C -0.12 -1.11 9.67 -39.59 -0.38 -1.49 16 6 C -0.12 -1.18 9.70 -39.58 -0.38 -1.56 16 7 C -0.08 -0.80 4.93 -104.62 -0.52 -1.31 16 8 C -0.07 -0.74 4.72 -27.88 -0.13 -0.87 16 9 C -0.10 -1.29 2.93 -88.79 -0.26 -1.55 16 10 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.13 -1.71 5.64 -24.48 -0.14 -1.85 16 12 C 0.06 1.04 5.02 -2.19 -0.01 1.03 16 13 N -0.52 -9.80 5.16 -231.11 -1.19 -10.99 16 14 C 0.03 0.59 4.36 -3.82 -0.02 0.57 16 15 C 0.24 6.08 3.08 -27.88 -0.09 5.99 16 16 H 0.06 1.79 8.14 -51.93 -0.42 1.37 16 17 O -0.56 -14.27 10.02 -35.23 -0.35 -14.63 16 18 C -0.57 -15.92 8.76 -34.44 -0.30 -16.22 16 19 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 20 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 21 N -0.86 -25.62 12.84 55.43 0.71 -24.91 16 22 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C 0.04 0.67 6.46 -2.83 -0.02 0.65 16 27 C -0.11 -1.13 9.06 -39.58 -0.36 -1.49 16 28 C -0.11 -1.07 8.71 -39.58 -0.34 -1.42 16 29 H 0.06 0.37 7.39 -51.93 -0.38 -0.02 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.50 7.88 -51.93 -0.41 0.10 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.40 7.39 -51.93 -0.38 0.02 16 36 H 0.12 0.90 7.95 -52.49 -0.42 0.49 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.07 0.78 8.00 -51.93 -0.42 0.37 16 39 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 0.92 7.98 -51.93 -0.41 0.51 16 42 H 0.09 1.74 7.38 -51.93 -0.38 1.35 16 43 H 0.04 0.71 6.83 -51.93 -0.35 0.35 16 44 H 0.06 1.36 8.03 -51.93 -0.42 0.94 16 45 H 0.02 0.44 7.85 -51.93 -0.41 0.03 16 46 H 0.34 7.82 8.41 45.56 0.38 8.20 16 47 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.07 1.00 7.82 -51.93 -0.41 0.59 16 49 H 0.05 0.70 7.55 -51.93 -0.39 0.31 16 50 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 51 H 0.12 0.95 7.10 -52.49 -0.37 0.58 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -30.39 398.01 -11.56 -41.95 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -8.54 Total: 6.83 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.16 Total: -20.59 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.48 Total: -35.90 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.35 Total: -14.63 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.39 -11.56 -41.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646316646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.456 kcal (2) G-P(sol) polarization free energy of solvation -30.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds