Wall clock time and date at job start Tue Mar 31 2020 12:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47068 * 2 1 4 4 C 1.50696 * 109.47511 * 120.00237 * 2 1 3 5 5 C 1.38230 * 120.00309 * 120.00024 * 4 2 1 6 6 C 1.38235 * 120.00326 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.50706 * 120.00196 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.46845 * 90.00215 * 8 7 6 10 10 H 1.09002 * 110.62908 * 305.70038 * 9 8 7 11 11 C 1.55144 * 110.70543 * 68.80711 * 9 8 7 12 12 C 1.55112 * 101.55518 * 153.90539 * 11 9 8 13 13 N 1.47842 * 104.90966 * 323.15689 * 12 11 9 14 14 C 1.46894 * 111.00241 * 146.24048 * 13 12 11 15 15 C 1.53006 * 109.47033 * 69.15751 * 14 13 12 16 16 H 1.09005 * 109.46848 * 60.00382 * 15 14 13 17 17 O 1.42893 * 109.47090 * 300.00072 * 15 14 13 18 18 C 1.50704 * 109.47058 * 179.97438 * 15 14 13 19 19 H 1.07998 * 120.00208 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99766 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00115 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 119.99878 * 180.02562 * 20 18 15 23 23 H 1.48506 * 109.46915 * 59.99832 * 22 20 18 24 24 H 1.48494 * 109.47282 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47216 * 300.00288 * 22 20 18 26 26 C 1.47445 * 108.56522 * 23.97718 * 13 12 11 27 27 C 1.38240 * 120.00061 * 0.07178 * 7 6 5 28 28 C 1.38234 * 120.00081 * 359.88514 * 27 7 6 29 29 H 1.09002 * 109.46963 * 299.99827 * 1 2 3 30 30 H 1.09001 * 109.47529 * 59.99953 * 1 2 3 31 31 H 1.08999 * 109.47147 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47421 * 240.00448 * 2 1 3 33 33 H 1.09001 * 109.47446 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46984 * 300.00380 * 3 2 1 35 35 H 1.09002 * 109.47087 * 60.00249 * 3 2 1 36 36 H 1.08000 * 120.00376 * 359.97438 * 5 4 2 37 37 H 1.08000 * 120.00616 * 179.72578 * 6 5 4 38 38 H 1.08998 * 109.47268 * 210.00355 * 8 7 6 39 39 H 1.08998 * 109.47151 * 330.00502 * 8 7 6 40 40 H 1.09002 * 110.98993 * 272.12559 * 11 9 8 41 41 H 1.08997 * 110.98701 * 35.94389 * 11 9 8 42 42 H 1.09006 * 110.42310 * 204.23990 * 12 11 9 43 43 H 1.09004 * 110.31554 * 82.01896 * 12 11 9 44 44 H 1.09003 * 109.47759 * 189.15784 * 14 13 12 45 45 H 1.08999 * 109.47408 * 309.16127 * 14 13 12 46 46 H 0.96696 * 114.00312 * 299.99892 * 17 15 14 47 47 H 0.96996 * 120.00179 * 179.97438 * 21 20 18 48 48 H 1.09000 * 109.88797 * 239.60596 * 26 13 12 49 49 H 1.08994 * 109.89308 * 118.41907 * 26 13 12 50 50 H 1.08005 * 120.00107 * 179.97438 * 27 7 6 51 51 H 1.07999 * 120.00147 * 180.10835 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8271 -1.8343 1.1035 6 6 3.2884 -2.4856 2.2321 7 6 2.9554 -2.0128 3.4877 8 6 3.4578 -2.7232 4.7182 9 6 4.8062 -2.1315 5.1338 10 1 5.5095 -2.1567 4.3015 11 6 4.6306 -0.6826 5.6600 12 6 5.8521 -0.5456 6.6062 13 7 5.9959 -1.8750 7.2367 14 6 7.4090 -2.1893 7.4862 15 6 7.9468 -1.2775 8.5910 16 1 7.3728 -1.4356 9.5041 17 8 7.8271 0.0867 8.1831 18 6 9.3964 -1.6004 8.8474 19 1 9.8852 -2.3777 8.2790 20 6 10.0984 -0.9033 9.8077 21 7 9.5030 0.0430 10.5002 22 14 11.8954 -1.3029 10.1251 23 1 12.6776 -1.0871 8.8813 24 1 12.4170 -0.4190 11.1982 25 1 12.0199 -2.7209 10.5483 26 6 5.3785 -2.8823 6.3545 27 6 2.1598 -0.8894 3.6146 28 6 1.6992 -0.2375 2.4860 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.0877 -2.2035 0.1226 37 1 3.9057 -3.3663 2.1331 38 1 2.7402 -2.5971 5.5289 39 1 3.5781 -3.7846 4.5013 40 1 4.6824 0.0381 4.8440 41 1 3.6967 -0.5784 6.2124 42 1 5.6630 0.2152 7.3636 43 1 6.7469 -0.2975 6.0354 44 1 7.5004 -3.2299 7.7974 45 1 7.9830 -2.0313 6.5732 46 1 8.3137 0.2998 7.3751 47 1 9.9968 0.5332 11.1760 48 1 4.5758 -3.3962 6.8834 49 1 6.1304 -3.6009 6.0289 50 1 1.8992 -0.5202 4.5956 51 1 1.0791 0.6411 2.5851 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646316646.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:44 Heat of formation + Delta-G solvation = -65.496301 kcal Electronic energy + Delta-G solvation = -26326.149073 eV Core-core repulsion = 22802.222314 eV Total energy + Delta-G solvation = -3523.926758 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.83266 -39.96005 -37.67357 -36.52296 -34.32003 -33.99720 -31.76980 -31.72184 -29.86860 -29.52280 -27.96738 -26.94081 -25.67343 -23.87507 -22.83974 -22.79758 -21.67331 -21.12578 -20.67281 -19.00056 -17.38841 -16.98948 -16.67356 -16.47484 -16.35141 -15.99235 -15.71010 -15.61816 -14.89846 -14.77014 -14.58705 -14.49522 -14.32610 -14.31840 -14.08084 -13.55586 -13.47645 -13.16162 -13.10596 -12.92080 -12.88019 -12.81339 -12.71616 -12.58580 -12.25614 -12.07829 -12.00408 -11.91047 -11.85209 -11.63397 -11.47946 -11.40461 -11.34217 -11.00315 -10.70267 -10.03587 -9.74425 -9.33964 -9.06302 -8.12872 -6.39349 0.49284 0.57547 1.39911 1.41942 1.50115 2.38317 2.88339 3.12307 3.23043 3.61386 3.78150 3.85934 3.89170 3.93908 4.18235 4.21065 4.25643 4.27955 4.34651 4.43708 4.46635 4.53796 4.54967 4.58468 4.60738 4.66568 4.75866 4.78104 4.81657 4.95009 4.97761 5.00030 5.00713 5.05349 5.06313 5.09958 5.16396 5.25209 5.30608 5.31185 5.37477 5.39555 5.45028 5.62008 5.62126 5.75057 5.81120 5.82693 6.01907 6.19935 6.28477 6.29957 6.73792 7.32957 7.54204 8.91336 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.027570 B = 0.002159 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.366398 B =12965.487661 C =13273.899568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C -0.143 4.143 4 C -0.089 4.089 5 C -0.127 4.127 6 C -0.125 4.125 7 C -0.088 4.088 8 C -0.061 4.061 9 C -0.089 4.089 10 H 0.070 0.930 11 C -0.112 4.112 12 C 0.061 3.939 13 N -0.543 5.543 14 C 0.047 3.953 15 C 0.237 3.763 16 H 0.019 0.981 17 O -0.569 6.569 18 C -0.589 4.589 19 H 0.058 0.942 20 C 0.025 3.975 21 N -0.899 5.899 22 Si 0.961 3.039 23 H -0.267 1.267 24 H -0.284 1.284 25 H -0.268 1.268 26 C 0.043 3.957 27 C -0.121 4.121 28 C -0.121 4.121 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.132 0.868 37 H 0.129 0.871 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.032 0.968 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.348 0.652 47 H 0.261 0.739 48 H 0.080 0.920 49 H 0.051 0.949 50 H 0.125 0.875 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.792 -2.644 -22.665 28.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.075 4.075 3 C -0.201 4.201 4 C -0.089 4.089 5 C -0.145 4.145 6 C -0.143 4.143 7 C -0.088 4.088 8 C -0.099 4.099 9 C -0.108 4.108 10 H 0.088 0.912 11 C -0.150 4.150 12 C -0.067 4.067 13 N -0.267 5.267 14 C -0.081 4.081 15 C 0.179 3.821 16 H 0.036 0.964 17 O -0.373 6.373 18 C -0.627 4.627 19 H 0.077 0.923 20 C -0.178 4.178 21 N -0.535 5.535 22 Si 0.786 3.214 23 H -0.192 1.192 24 H -0.210 1.210 25 H -0.193 1.193 26 C -0.084 4.084 27 C -0.139 4.139 28 C -0.139 4.139 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.084 0.916 45 H 0.043 0.957 46 H 0.192 0.808 47 H 0.070 0.930 48 H 0.099 0.901 49 H 0.069 0.931 50 H 0.143 0.857 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.406 -2.499 -21.485 28.402 hybrid contribution 1.980 -0.153 -0.484 2.044 sum -16.426 -2.652 -21.970 27.559 Atomic orbital electron populations 1.21835 0.93747 1.01869 1.02411 1.20155 0.96404 0.96064 0.94831 1.21851 1.00775 0.95017 1.02413 1.20071 0.97760 0.95836 0.95187 1.21257 0.98336 0.95885 0.99025 1.21226 1.00361 1.00653 0.92082 1.19937 0.97729 0.96283 0.94900 1.20516 0.95102 0.99316 0.94952 1.22246 0.96981 0.94983 0.96605 0.91183 1.22795 0.97846 0.96455 0.97914 1.22929 0.96917 0.91178 0.95654 1.63493 1.15245 1.02874 1.45101 1.22815 0.87433 0.99874 0.98027 1.19146 0.92879 0.78850 0.91176 0.96355 1.86561 1.73517 1.30815 1.46370 1.22002 0.97959 1.20961 1.21763 0.92344 1.25922 1.02842 0.94205 0.94812 1.70219 1.38124 1.22452 1.22741 0.85591 0.79523 0.78307 0.77999 1.19201 1.20987 1.19306 1.22981 0.98759 0.94464 0.92220 1.21214 0.98090 0.95550 0.99066 1.21125 1.00537 1.00258 0.92008 0.92577 0.91301 0.92957 0.90057 0.93343 0.91247 0.92605 0.85006 0.85329 0.90431 0.89901 0.90679 0.90574 0.92049 0.94967 0.91604 0.95747 0.80784 0.93002 0.90143 0.93053 0.85733 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.01 71.98 0.65 -0.90 16 2 C -0.06 -0.71 3.09 -11.54 -0.04 -0.75 16 3 C -0.14 -1.75 9.01 71.98 0.65 -1.10 16 4 C -0.09 -1.47 4.78 -19.87 -0.09 -1.57 16 5 C -0.13 -2.17 9.67 22.27 0.22 -1.95 16 6 C -0.13 -2.29 9.70 22.27 0.22 -2.07 16 7 C -0.09 -1.71 4.93 -19.86 -0.10 -1.81 16 8 C -0.06 -1.16 4.72 29.85 0.14 -1.02 16 9 C -0.09 -2.10 2.93 -9.61 -0.03 -2.12 16 10 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 11 C -0.11 -2.93 5.64 32.05 0.18 -2.75 16 12 C 0.06 2.13 5.02 86.85 0.44 2.56 16 13 N -0.54 -20.29 5.16 -885.11 -4.57 -24.86 16 14 C 0.05 2.00 4.36 86.31 0.38 2.38 16 15 C 0.24 12.58 3.08 29.85 0.09 12.67 16 16 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 17 O -0.57 -29.97 10.02 -148.98 -1.49 -31.46 16 18 C -0.59 -33.01 8.76 25.60 0.22 -32.78 16 19 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 20 C 0.02 1.41 5.40 84.66 0.46 1.86 16 21 N -0.90 -54.79 12.84 21.45 0.28 -54.52 16 22 Si 0.96 43.89 29.54 68.60 2.03 45.92 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 C 0.04 1.24 6.46 86.65 0.56 1.80 16 27 C -0.12 -2.31 9.06 22.27 0.20 -2.11 16 28 C -0.12 -2.13 8.71 22.27 0.19 -1.94 16 29 H 0.06 0.63 7.39 -2.39 -0.02 0.61 16 30 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.93 7.88 -2.39 -0.02 0.91 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.70 7.39 -2.39 -0.02 0.68 16 36 H 0.13 1.76 7.95 -2.91 -0.02 1.74 16 37 H 0.13 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.08 1.45 8.00 -2.39 -0.02 1.43 16 39 H 0.08 1.38 8.09 -2.39 -0.02 1.36 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 1.91 7.98 -2.39 -0.02 1.89 16 42 H 0.06 2.47 7.38 -2.38 -0.02 2.45 16 43 H 0.03 1.16 6.83 -2.39 -0.02 1.14 16 44 H 0.07 2.76 8.03 -2.39 -0.02 2.74 16 45 H 0.02 1.02 7.85 -2.39 -0.02 1.00 16 46 H 0.35 16.50 8.41 -74.06 -0.62 15.88 16 47 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 48 H 0.08 2.15 7.82 -2.39 -0.02 2.13 16 49 H 0.05 1.44 7.55 -2.39 -0.02 1.42 16 50 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 51 H 0.13 1.90 7.10 -2.91 -0.02 1.88 16 Total: -1.00 -65.63 398.01 0.83 -64.80 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.26 Total: 31.73 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 4.33 Total: -31.61 kcal Atomic # 7 Polarization: -75.08 SS G_CDS: -4.30 Total: -79.38 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.49 Total: -31.46 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -65.63 0.83 -64.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646316646.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.698 kcal (2) G-P(sol) polarization free energy of solvation -65.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds