Wall clock time and date at job start Tue Mar 31 2020 11:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99757 * 2 1 4 4 C 1.53004 * 109.47151 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.46966 * 67.71595 * 4 3 2 6 6 C 1.46901 * 111.00507 * 289.11289 * 5 4 3 7 7 C 1.50696 * 109.47048 * 289.65665 * 6 5 4 8 8 C 1.38253 * 120.00289 * 275.56006 * 7 6 5 9 9 C 1.38216 * 120.00191 * 179.76745 * 8 7 6 10 10 C 1.38248 * 119.99819 * 0.50855 * 9 8 7 11 11 C 1.50700 * 120.00224 * 179.72513 * 10 9 8 12 12 C 1.38222 * 120.00329 * 359.74855 * 10 9 8 13 13 C 1.50690 * 120.00364 * 179.97438 * 12 10 9 14 14 C 1.38212 * 119.99838 * 95.83789 * 7 6 5 15 15 C 1.46905 * 111.00195 * 53.06969 * 5 4 3 16 16 C 1.53007 * 109.46950 * 70.83525 * 15 5 4 17 17 C 1.50695 * 115.54693 * 54.77125 * 16 15 5 18 18 H 1.08006 * 120.00236 * 274.71849 * 17 16 15 19 19 C 1.37875 * 119.99950 * 94.44580 * 17 16 15 20 20 N 1.31515 * 120.00020 * 175.06270 * 19 17 16 21 21 Si 1.86802 * 120.00150 * 355.05910 * 19 17 16 22 22 H 1.48500 * 109.46708 * 94.91060 * 21 19 17 23 23 H 1.48500 * 109.47241 * 214.91191 * 21 19 17 24 24 H 1.48495 * 109.46872 * 334.91490 * 21 19 17 25 25 C 1.52996 * 117.49960 * 200.44012 * 16 15 5 26 26 C 1.52999 * 117.49835 * 269.09991 * 16 15 5 27 27 H 1.09004 * 109.47676 * 300.00164 * 1 2 3 28 28 H 1.09008 * 109.47000 * 60.00152 * 1 2 3 29 29 H 1.09009 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47254 * 60.00065 * 3 2 1 31 31 H 1.08993 * 109.47379 * 299.99929 * 3 2 1 32 32 H 1.09006 * 109.46944 * 307.72077 * 4 3 2 33 33 H 1.08995 * 109.47084 * 187.72617 * 4 3 2 34 34 H 1.09004 * 109.46989 * 49.66005 * 6 5 4 35 35 H 1.09000 * 109.46931 * 169.65190 * 6 5 4 36 36 H 1.08005 * 120.00068 * 0.02562 * 8 7 6 37 37 H 1.07999 * 119.99824 * 180.23624 * 9 8 7 38 38 H 1.09003 * 109.47175 * 270.02576 * 11 10 9 39 39 H 1.09001 * 109.46759 * 30.02212 * 11 10 9 40 40 H 1.08998 * 109.47311 * 150.02493 * 11 10 9 41 41 H 1.08999 * 109.47536 * 270.02147 * 13 12 10 42 42 H 1.09000 * 109.47186 * 30.01961 * 13 12 10 43 43 H 1.09003 * 109.47247 * 150.02069 * 13 12 10 44 44 H 1.08001 * 120.00416 * 0.02562 * 14 7 6 45 45 H 1.09002 * 109.46978 * 310.84315 * 15 5 4 46 46 H 1.08997 * 109.47531 * 190.83664 * 15 5 4 47 47 H 0.97003 * 119.99813 * 179.97438 * 20 19 17 48 48 H 1.08997 * 117.49846 * 215.00699 * 25 16 15 49 49 H 1.09006 * 117.49607 * 0.02562 * 25 16 15 50 50 H 1.08999 * 117.50080 * 359.97438 * 26 16 15 51 51 H 1.09000 * 117.49657 * 144.97702 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9826 0.6223 -1.2806 6 6 3.6216 -0.7977 -1.3869 7 6 4.4658 -1.6034 -0.4335 8 6 5.7283 -2.0212 -0.8118 9 6 6.5045 -2.7561 0.0645 10 6 6.0143 -3.0823 1.3153 11 6 6.8582 -3.8888 2.2685 12 6 4.7501 -2.6691 1.6916 13 6 4.2157 -3.0252 3.0548 14 6 3.9758 -1.9295 0.8170 15 6 3.4405 1.3894 -2.4101 16 6 4.1252 2.7562 -2.4738 17 6 5.6305 2.7267 -2.5363 18 1 6.2077 2.6630 -1.6257 19 6 6.2709 2.7754 -3.7564 20 7 7.5830 2.8477 -3.8079 21 14 5.2748 2.7385 -5.3362 22 1 5.0358 4.1278 -5.8032 23 1 6.0238 1.9885 -6.3763 24 1 3.9729 2.0699 -5.0849 25 6 3.4080 3.8706 -3.2384 26 6 3.4722 3.9097 -1.7095 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8477 0.5294 0.8138 33 1 3.9779 2.1712 0.1388 34 1 2.5684 -0.9246 -1.1361 35 1 3.7961 -1.1415 -2.4065 36 1 6.1096 -1.7698 -1.7905 37 1 7.4921 -3.0792 -0.2297 38 1 6.6644 -4.9506 2.1160 39 1 7.9124 -3.6818 2.0847 40 1 6.6080 -3.6174 3.2941 41 1 3.6899 -3.9785 3.0014 42 1 5.0430 -3.1057 3.7598 43 1 3.5274 -2.2490 3.3894 44 1 2.9877 -1.6073 1.1107 45 1 2.3676 1.5265 -2.2746 46 1 3.6233 0.8478 -3.3382 47 1 8.0336 2.8815 -4.6663 48 1 4.0251 4.5824 -3.7867 49 1 2.4482 3.6301 -3.6957 50 1 2.5547 3.6949 -1.1617 51 1 4.1316 4.6470 -1.2516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001648342276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:50 Heat of formation + Delta-G solvation = 16.261713 kcal Electronic energy + Delta-G solvation = -28163.471503 eV Core-core repulsion = 24643.090038 eV Total energy + Delta-G solvation = -3520.381465 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.65552 -38.62025 -37.07119 -35.41754 -33.11077 -31.91936 -31.83160 -29.59690 -28.20001 -26.84690 -26.42213 -25.61376 -24.84411 -23.57339 -21.75079 -21.60437 -20.96125 -19.36466 -18.67183 -16.57587 -16.37624 -16.11129 -15.53661 -15.40876 -15.03709 -14.80369 -14.65501 -14.28321 -14.04941 -13.88841 -13.77847 -12.91432 -12.76557 -12.73355 -12.61120 -12.55585 -12.08707 -12.05468 -11.94236 -11.79012 -11.73120 -11.62930 -11.28853 -11.12802 -10.99699 -10.81267 -10.63777 -10.41503 -10.40561 -10.32001 -9.93815 -9.55519 -9.37199 -8.86451 -8.44969 -8.38428 -8.34645 -8.06367 -7.34170 -5.94162 -3.91508 1.70684 1.78972 3.35791 3.46010 3.49760 3.82373 4.05217 4.54367 4.67504 5.00877 5.03661 5.09292 5.20403 5.23240 5.26132 5.28137 5.34435 5.39668 5.45596 5.50365 5.55568 5.56230 5.58404 5.66264 5.73540 5.83639 5.88054 5.94604 5.95479 6.00502 6.03690 6.05432 6.12381 6.23178 6.26201 6.37751 6.45108 6.49901 6.54636 6.57929 6.61840 6.76661 6.85310 6.95767 7.10054 7.15472 7.21425 7.23671 7.43458 7.77189 7.88933 7.97151 8.70507 9.13988 9.69998 11.18699 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.004820 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.933150 B = 5807.448626 C = 7385.103560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.380 6.380 3 C 0.015 3.985 4 C 0.060 3.940 5 N -0.496 5.496 6 C 0.075 3.925 7 C -0.061 4.061 8 C -0.094 4.094 9 C -0.121 4.121 10 C -0.098 4.098 11 C -0.113 4.113 12 C -0.099 4.099 13 C -0.111 4.111 14 C -0.107 4.107 15 C 0.090 3.910 16 C 0.016 3.984 17 C -0.453 4.453 18 H 0.080 0.920 19 C 0.073 3.927 20 N -0.904 5.904 21 Si 0.878 3.122 22 H -0.285 1.285 23 H -0.298 1.298 24 H -0.262 1.262 25 C -0.205 4.205 26 C -0.189 4.189 27 H 0.036 0.964 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.124 0.876 45 H 0.015 0.985 46 H 0.065 0.935 47 H 0.260 0.740 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.066 0.934 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.946 -10.499 10.637 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.299 6.299 3 C -0.063 4.063 4 C -0.068 4.068 5 N -0.217 5.217 6 C -0.052 4.052 7 C -0.062 4.062 8 C -0.113 4.113 9 C -0.139 4.139 10 C -0.098 4.098 11 C -0.169 4.169 12 C -0.099 4.099 13 C -0.168 4.168 14 C -0.126 4.126 15 C -0.037 4.037 16 C 0.015 3.985 17 C -0.491 4.491 18 H 0.098 0.902 19 C -0.128 4.128 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.211 1.211 23 H -0.226 1.226 24 H -0.187 1.187 25 C -0.243 4.243 26 C -0.226 4.226 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.141 0.859 37 H 0.134 0.866 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.141 0.859 45 H 0.033 0.967 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.087 0.913 50 H 0.084 0.916 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.150 -10.626 10.479 18.048 hybrid contribution -1.535 0.382 -1.096 1.924 sum -11.684 -10.244 9.383 18.152 Atomic orbital electron populations 1.22720 0.82542 1.02154 0.99615 1.87965 1.18661 1.28322 1.94965 1.23651 0.97459 0.84754 1.00457 1.22340 0.88823 1.02165 0.93522 1.61880 1.58541 1.00067 1.01199 1.21445 0.97907 0.88375 0.97478 1.19781 0.94853 0.96790 0.94757 1.21101 0.93653 0.96453 1.00058 1.20955 0.99623 0.99706 0.93630 1.19636 0.94718 1.00086 0.95376 1.20800 0.98953 0.98911 0.98267 1.19633 0.94309 0.99662 0.96333 1.20781 1.00862 1.01317 0.93835 1.21007 0.99787 0.98433 0.93327 1.21954 0.93532 0.95447 0.92757 1.19419 0.95500 0.85432 0.98151 1.20114 0.86128 1.48578 0.94241 0.90243 1.24934 0.94527 0.94765 0.98556 1.69902 1.07753 1.51339 1.25230 0.86901 0.80812 0.77830 0.83711 1.21128 1.22561 1.18661 1.22951 1.01059 1.05801 0.94508 1.22940 1.01238 1.05348 0.93069 0.94500 0.94482 0.90109 0.93726 0.92126 0.90542 0.88487 0.90840 0.91332 0.85894 0.86624 0.91791 0.91932 0.91598 0.91828 0.91625 0.91998 0.85856 0.96712 0.91617 0.92974 0.89456 0.91341 0.91579 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -5.17 6.63 -35.23 -0.23 -5.40 16 3 C 0.01 0.21 5.31 37.16 0.20 0.41 16 4 C 0.06 1.01 5.34 -3.83 -0.02 0.99 16 5 N -0.50 -9.44 4.32 -236.07 -1.02 -10.46 16 6 C 0.07 1.27 4.92 -4.98 -0.02 1.25 16 7 C -0.06 -1.01 4.88 -104.63 -0.51 -1.52 16 8 C -0.09 -1.59 9.72 -39.58 -0.38 -1.97 16 9 C -0.12 -1.83 9.70 -39.59 -0.38 -2.21 16 10 C -0.10 -1.35 5.88 -104.62 -0.62 -1.96 16 11 C -0.11 -1.19 9.60 36.01 0.35 -0.84 16 12 C -0.10 -1.36 5.88 -104.63 -0.62 -1.97 16 13 C -0.11 -1.17 9.60 36.00 0.35 -0.82 16 14 C -0.11 -1.59 7.88 -39.58 -0.31 -1.91 16 15 C 0.09 1.83 4.45 -3.82 -0.02 1.81 16 16 C 0.02 0.36 0.59 -155.66 -0.09 0.27 16 17 C -0.45 -12.38 9.14 -34.44 -0.31 -12.70 16 18 H 0.08 2.43 8.06 -52.48 -0.42 2.01 16 19 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 20 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 21 Si 0.88 21.87 24.73 -169.99 -4.20 17.66 16 22 H -0.28 -7.01 7.09 56.52 0.40 -6.61 16 23 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 24 H -0.26 -6.16 5.80 56.52 0.33 -5.83 16 25 C -0.21 -4.33 7.34 -26.70 -0.20 -4.53 16 26 C -0.19 -3.71 8.57 -26.69 -0.23 -3.94 16 27 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.92 4.54 -51.93 -0.24 0.68 16 32 H 0.08 1.28 6.04 -51.93 -0.31 0.96 16 33 H 0.10 1.76 6.75 -51.93 -0.35 1.41 16 34 H 0.07 1.19 4.71 -51.93 -0.24 0.95 16 35 H 0.07 1.19 7.76 -51.93 -0.40 0.79 16 36 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 37 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.07 0.62 5.95 -51.93 -0.31 0.31 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.61 5.95 -51.93 -0.31 0.30 16 43 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 44 H 0.12 1.76 7.11 -52.49 -0.37 1.39 16 45 H 0.02 0.28 5.39 -51.93 -0.28 0.00 16 46 H 0.07 1.42 6.75 -51.93 -0.35 1.07 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.09 1.97 6.68 -51.93 -0.35 1.63 16 49 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 50 H 0.07 1.13 6.57 -51.93 -0.34 0.79 16 51 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -30.26 382.91 -9.28 -39.54 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -8.56 Total: 6.05 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -1.81 Total: -26.29 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.25 Total: -37.34 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.23 Total: -5.40 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.20 Total: 17.66 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.26 -9.28 -39.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648342276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.800 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds