Wall clock time and date at job start Tue Mar 31 2020 11:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99757 * 2 1 4 4 C 1.53004 * 109.47151 * 179.97438 * 3 2 1 5 5 N 1.46891 * 109.46966 * 67.71595 * 4 3 2 6 6 C 1.46901 * 111.00507 * 289.11289 * 5 4 3 7 7 C 1.50696 * 109.47048 * 289.65665 * 6 5 4 8 8 C 1.38253 * 120.00289 * 275.56006 * 7 6 5 9 9 C 1.38216 * 120.00191 * 179.76745 * 8 7 6 10 10 C 1.38248 * 119.99819 * 0.50855 * 9 8 7 11 11 C 1.50700 * 120.00224 * 179.72513 * 10 9 8 12 12 C 1.38222 * 120.00329 * 359.74855 * 10 9 8 13 13 C 1.50690 * 120.00364 * 179.97438 * 12 10 9 14 14 C 1.38212 * 119.99838 * 95.83789 * 7 6 5 15 15 C 1.46905 * 111.00195 * 53.06969 * 5 4 3 16 16 C 1.53007 * 109.46950 * 70.83525 * 15 5 4 17 17 C 1.50695 * 115.54693 * 54.77125 * 16 15 5 18 18 H 1.08006 * 120.00236 * 274.71849 * 17 16 15 19 19 C 1.37875 * 119.99950 * 94.44580 * 17 16 15 20 20 N 1.31515 * 120.00020 * 175.06270 * 19 17 16 21 21 Si 1.86802 * 120.00150 * 355.05910 * 19 17 16 22 22 H 1.48500 * 109.46708 * 94.91060 * 21 19 17 23 23 H 1.48500 * 109.47241 * 214.91191 * 21 19 17 24 24 H 1.48495 * 109.46872 * 334.91490 * 21 19 17 25 25 C 1.52996 * 117.49960 * 200.44012 * 16 15 5 26 26 C 1.52999 * 117.49835 * 269.09991 * 16 15 5 27 27 H 1.09004 * 109.47676 * 300.00164 * 1 2 3 28 28 H 1.09008 * 109.47000 * 60.00152 * 1 2 3 29 29 H 1.09009 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47254 * 60.00065 * 3 2 1 31 31 H 1.08993 * 109.47379 * 299.99929 * 3 2 1 32 32 H 1.09006 * 109.46944 * 307.72077 * 4 3 2 33 33 H 1.08995 * 109.47084 * 187.72617 * 4 3 2 34 34 H 1.09004 * 109.46989 * 49.66005 * 6 5 4 35 35 H 1.09000 * 109.46931 * 169.65190 * 6 5 4 36 36 H 1.08005 * 120.00068 * 0.02562 * 8 7 6 37 37 H 1.07999 * 119.99824 * 180.23624 * 9 8 7 38 38 H 1.09003 * 109.47175 * 270.02576 * 11 10 9 39 39 H 1.09001 * 109.46759 * 30.02212 * 11 10 9 40 40 H 1.08998 * 109.47311 * 150.02493 * 11 10 9 41 41 H 1.08999 * 109.47536 * 270.02147 * 13 12 10 42 42 H 1.09000 * 109.47186 * 30.01961 * 13 12 10 43 43 H 1.09003 * 109.47247 * 150.02069 * 13 12 10 44 44 H 1.08001 * 120.00416 * 0.02562 * 14 7 6 45 45 H 1.09002 * 109.46978 * 310.84315 * 15 5 4 46 46 H 1.08997 * 109.47531 * 190.83664 * 15 5 4 47 47 H 0.97003 * 119.99813 * 179.97438 * 20 19 17 48 48 H 1.08997 * 117.49846 * 215.00699 * 25 16 15 49 49 H 1.09006 * 117.49607 * 0.02562 * 25 16 15 50 50 H 1.08999 * 117.50080 * 359.97438 * 26 16 15 51 51 H 1.09000 * 117.49657 * 144.97702 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9826 0.6223 -1.2806 6 6 3.6216 -0.7977 -1.3869 7 6 4.4658 -1.6034 -0.4335 8 6 5.7283 -2.0212 -0.8118 9 6 6.5045 -2.7561 0.0645 10 6 6.0143 -3.0823 1.3153 11 6 6.8582 -3.8888 2.2685 12 6 4.7501 -2.6691 1.6916 13 6 4.2157 -3.0252 3.0548 14 6 3.9758 -1.9295 0.8170 15 6 3.4405 1.3894 -2.4101 16 6 4.1252 2.7562 -2.4738 17 6 5.6305 2.7267 -2.5363 18 1 6.2077 2.6630 -1.6257 19 6 6.2709 2.7754 -3.7564 20 7 7.5830 2.8477 -3.8079 21 14 5.2748 2.7385 -5.3362 22 1 5.0358 4.1278 -5.8032 23 1 6.0238 1.9885 -6.3763 24 1 3.9729 2.0699 -5.0849 25 6 3.4080 3.8706 -3.2384 26 6 3.4722 3.9097 -1.7095 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8477 0.5294 0.8138 33 1 3.9779 2.1712 0.1388 34 1 2.5684 -0.9246 -1.1361 35 1 3.7961 -1.1415 -2.4065 36 1 6.1096 -1.7698 -1.7905 37 1 7.4921 -3.0792 -0.2297 38 1 6.6644 -4.9506 2.1160 39 1 7.9124 -3.6818 2.0847 40 1 6.6080 -3.6174 3.2941 41 1 3.6899 -3.9785 3.0014 42 1 5.0430 -3.1057 3.7598 43 1 3.5274 -2.2490 3.3894 44 1 2.9877 -1.6073 1.1107 45 1 2.3676 1.5265 -2.2746 46 1 3.6233 0.8478 -3.3382 47 1 8.0336 2.8815 -4.6663 48 1 4.0251 4.5824 -3.7867 49 1 2.4482 3.6301 -3.6957 50 1 2.5547 3.6949 -1.1617 51 1 4.1316 4.6470 -1.2516 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001648342276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:49 Heat of formation + Delta-G solvation = -0.993604 kcal Electronic energy + Delta-G solvation = -28164.219750 eV Core-core repulsion = 24643.090038 eV Total energy + Delta-G solvation = -3521.129711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.88969 -39.87353 -38.42475 -36.79647 -34.31568 -34.01584 -32.93687 -30.79608 -29.43061 -27.99137 -27.62210 -27.15304 -26.30255 -24.75330 -23.30550 -22.84826 -22.33959 -20.60729 -20.44083 -18.15249 -17.68598 -17.42337 -16.89167 -16.59092 -16.48928 -16.20262 -15.93572 -15.53060 -15.35552 -15.09366 -14.92590 -14.68836 -14.36573 -13.87923 -13.69951 -13.51561 -13.40675 -13.36806 -13.21206 -13.04201 -12.98149 -12.74529 -12.63940 -12.43540 -12.37689 -12.18000 -12.13209 -11.93488 -11.88135 -11.60718 -11.56665 -11.39223 -10.80561 -10.51128 -10.40100 -10.18289 -9.52174 -9.22429 -8.72644 -8.16417 -6.16478 0.53539 0.60666 1.35658 1.40136 1.51765 2.43979 2.73958 2.90693 3.15532 3.21757 3.54366 3.97834 4.00222 4.09391 4.13690 4.18883 4.24428 4.26574 4.35172 4.40046 4.45145 4.49265 4.51839 4.57539 4.61821 4.65863 4.73102 4.74680 4.79169 4.84430 4.85783 4.87165 4.93202 4.96743 4.98308 5.06276 5.10571 5.13885 5.19825 5.22273 5.38445 5.43951 5.49012 5.56238 5.67924 5.82099 5.84696 5.92488 6.23561 6.28023 6.39064 6.47043 6.57132 6.89777 7.48175 9.00653 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.004820 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.933150 B = 5807.448626 C = 7385.103560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.395 6.395 3 C 0.027 3.973 4 C 0.064 3.936 5 N -0.524 5.524 6 C 0.083 3.917 7 C -0.077 4.077 8 C -0.123 4.123 9 C -0.133 4.133 10 C -0.101 4.101 11 C -0.111 4.111 12 C -0.101 4.101 13 C -0.109 4.109 14 C -0.108 4.108 15 C 0.101 3.899 16 C -0.010 4.010 17 C -0.441 4.441 18 H 0.028 0.972 19 C 0.012 3.988 20 N -0.958 5.958 21 Si 0.938 3.062 22 H -0.276 1.276 23 H -0.307 1.307 24 H -0.236 1.236 25 C -0.203 4.203 26 C -0.164 4.164 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.124 0.876 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.132 0.868 45 H 0.042 0.958 46 H 0.046 0.954 47 H 0.259 0.741 48 H 0.069 0.931 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.384 -11.392 12.302 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.314 6.314 3 C -0.051 4.051 4 C -0.064 4.064 5 N -0.246 5.246 6 C -0.043 4.043 7 C -0.077 4.077 8 C -0.142 4.142 9 C -0.151 4.151 10 C -0.102 4.102 11 C -0.167 4.167 12 C -0.101 4.101 13 C -0.165 4.165 14 C -0.127 4.127 15 C -0.026 4.026 16 C -0.011 4.011 17 C -0.479 4.479 18 H 0.046 0.954 19 C -0.183 4.183 20 N -0.600 5.600 21 Si 0.765 3.235 22 H -0.202 1.202 23 H -0.235 1.235 24 H -0.159 1.159 25 C -0.240 4.240 26 C -0.201 4.201 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.142 0.858 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.150 0.850 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.117 0.883 50 H 0.121 0.879 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.627 -11.518 12.165 21.595 hybrid contribution -0.414 0.623 -1.449 1.631 sum -14.041 -10.895 10.716 20.753 Atomic orbital electron populations 1.22909 0.80529 1.03500 1.00466 1.87902 1.20687 1.27761 1.95085 1.23375 0.95195 0.85341 1.01171 1.22197 0.91129 1.00815 0.92307 1.61782 1.59894 1.01082 1.01831 1.21369 0.98762 0.87277 0.96936 1.19806 0.94740 0.97477 0.95702 1.21082 0.94801 0.98506 0.99831 1.21152 0.99959 0.99660 0.94294 1.20046 0.95267 0.99695 0.95163 1.20859 0.98470 0.99229 0.98135 1.20079 0.94025 0.98358 0.97625 1.20841 1.01601 1.02271 0.91805 1.21106 1.00289 0.98557 0.92730 1.21717 0.94712 0.93656 0.92523 1.19303 0.92732 0.87652 1.01442 1.20219 0.89039 1.46537 0.92087 0.95366 1.25740 0.95316 0.95010 1.02212 1.70071 1.09881 1.54216 1.25858 0.85924 0.80257 0.78240 0.79112 1.20178 1.23543 1.15850 1.23000 1.01683 1.04001 0.95339 1.22921 1.01773 1.02711 0.92739 0.93041 0.94171 0.88639 0.91602 0.92533 0.90782 0.90390 0.89461 0.92852 0.88318 0.85753 0.90162 0.91639 0.89939 0.90192 0.90166 0.91330 0.84976 0.93989 0.93556 0.93256 0.91202 0.88255 0.87948 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.62 16 2 O -0.39 -9.55 6.63 -148.98 -0.99 -10.54 16 3 C 0.03 0.69 5.31 71.98 0.38 1.07 16 4 C 0.06 2.10 5.34 86.31 0.46 2.57 16 5 N -0.52 -20.15 4.32 -900.78 -3.89 -24.04 16 6 C 0.08 2.86 4.92 85.56 0.42 3.28 16 7 C -0.08 -2.59 4.88 -19.87 -0.10 -2.69 16 8 C -0.12 -4.43 9.72 22.27 0.22 -4.21 16 9 C -0.13 -4.11 9.70 22.27 0.22 -3.89 16 10 C -0.10 -2.67 5.88 -19.87 -0.12 -2.79 16 11 C -0.11 -2.06 9.60 71.24 0.68 -1.38 16 12 C -0.10 -2.58 5.88 -19.87 -0.12 -2.69 16 13 C -0.11 -1.92 9.60 71.23 0.68 -1.23 16 14 C -0.11 -3.13 7.88 22.27 0.18 -2.95 16 15 C 0.10 4.01 4.45 86.30 0.38 4.39 16 16 C -0.01 -0.45 0.59 -52.93 -0.03 -0.48 16 17 C -0.44 -25.12 9.14 25.60 0.23 -24.88 16 18 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 19 C 0.01 0.72 5.46 84.65 0.46 1.19 16 20 N -0.96 -61.86 13.96 21.45 0.30 -61.56 16 21 Si 0.94 45.92 24.73 68.60 1.70 47.62 16 22 H -0.28 -13.02 7.09 99.48 0.71 -12.31 16 23 H -0.31 -15.40 7.11 99.48 0.71 -14.70 16 24 H -0.24 -10.41 5.80 99.48 0.58 -9.84 16 25 C -0.20 -8.06 7.34 30.62 0.22 -7.84 16 26 C -0.16 -6.16 8.57 30.62 0.26 -5.89 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.50 4.54 -2.39 -0.01 1.49 16 32 H 0.07 2.44 6.04 -2.38 -0.01 2.43 16 33 H 0.08 2.83 6.75 -2.39 -0.02 2.81 16 34 H 0.09 2.74 4.71 -2.38 -0.01 2.72 16 35 H 0.05 1.94 7.76 -2.39 -0.02 1.92 16 36 H 0.10 3.87 8.06 -2.91 -0.02 3.85 16 37 H 0.12 3.46 8.06 -2.91 -0.02 3.44 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.06 1.19 8.09 -2.39 -0.02 1.17 16 40 H 0.08 1.27 5.95 -2.39 -0.01 1.26 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.19 5.95 -2.39 -0.01 1.18 16 43 H 0.07 1.14 8.09 -2.39 -0.02 1.12 16 44 H 0.13 3.52 7.11 -2.91 -0.02 3.50 16 45 H 0.04 1.44 5.39 -2.39 -0.01 1.42 16 46 H 0.05 1.98 6.75 -2.39 -0.02 1.96 16 47 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 48 H 0.07 3.04 6.68 -2.39 -0.02 3.03 16 49 H 0.10 3.37 8.14 -2.38 -0.02 3.35 16 50 H 0.10 3.11 6.57 -2.39 -0.02 3.09 16 51 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -69.68 382.91 3.58 -66.10 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.77 Total: 29.23 kcal Atomic # 6 Polarization: -52.50 SS G_CDS: 5.70 Total: -46.80 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -3.59 Total: -85.60 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.99 Total: -10.54 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.70 Total: 47.62 kcal Total: -69.68 3.58 -66.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001648342276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.102 kcal (2) G-P(sol) polarization free energy of solvation -69.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds