Wall clock time and date at job start Tue Mar 31 2020 12:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47118 * 2 1 4 4 C 1.34509 * 125.78971 * 89.99835 * 3 2 1 5 5 C 1.41385 * 106.83969 * 179.97438 * 4 3 2 6 6 C 1.34516 * 106.84387 * 359.97438 * 5 4 3 7 7 C 1.50694 * 125.79348 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.69349 * 359.06687 * 7 6 5 9 9 C 1.53985 * 109.69495 * 238.51685 * 7 6 5 10 10 C 1.45885 * 112.65878 * 158.90233 * 9 7 6 11 11 C 1.54518 * 111.67199 * 61.49856 * 10 9 7 12 12 C 1.50536 * 108.86195 * 282.74755 * 11 10 9 13 13 C 1.53915 * 112.93068 * 91.75981 * 12 11 10 14 14 N 1.44309 * 109.69274 * 119.61312 * 7 6 5 15 15 C 1.46896 * 111.00053 * 341.06083 * 14 7 6 16 16 C 1.53000 * 109.47295 * 176.16831 * 15 14 7 17 17 C 1.50710 * 115.54553 * 303.26336 * 16 15 14 18 18 H 1.07995 * 119.99601 * 114.84661 * 17 16 15 19 19 C 1.37880 * 119.99811 * 294.84041 * 17 16 15 20 20 N 1.31511 * 119.99440 * 167.46631 * 19 17 16 21 21 Si 1.86793 * 120.00117 * 347.46370 * 19 17 16 22 22 H 1.48504 * 109.47072 * 87.70846 * 21 19 17 23 23 H 1.48503 * 109.47009 * 207.70340 * 21 19 17 24 24 H 1.48499 * 109.47309 * 327.70807 * 21 19 17 25 25 C 1.52991 * 117.50111 * 157.59579 * 16 15 14 26 26 C 1.52999 * 117.50106 * 88.93265 * 16 15 14 27 27 O 1.34305 * 125.78546 * 269.97407 * 3 2 1 28 28 H 1.09003 * 109.46945 * 60.00149 * 1 2 3 29 29 H 1.09003 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47217 * 300.00254 * 1 2 3 31 31 H 1.08997 * 109.47217 * 239.99746 * 2 1 3 32 32 H 1.09003 * 109.46945 * 119.99851 * 2 1 3 33 33 H 1.07997 * 126.58206 * 359.94721 * 4 3 2 34 34 H 1.08004 * 126.57970 * 179.73344 * 5 4 3 35 35 H 1.08995 * 108.84901 * 279.71856 * 9 7 6 36 36 H 1.08997 * 108.84532 * 38.08577 * 9 7 6 37 37 H 1.08997 * 109.03877 * 182.06490 * 10 9 7 38 38 H 1.09004 * 109.03708 * 301.00850 * 10 9 7 39 39 H 1.09001 * 109.57213 * 42.56886 * 11 10 9 40 40 H 1.09006 * 109.56599 * 162.81205 * 11 10 9 41 41 H 1.08999 * 108.78654 * 212.64644 * 12 11 10 42 42 H 1.08994 * 108.79339 * 330.86882 * 12 11 10 43 43 H 1.09000 * 108.71582 * 78.75423 * 13 12 11 44 44 H 1.09010 * 108.70865 * 196.88451 * 13 12 11 45 45 H 1.09006 * 109.47001 * 296.16628 * 15 14 7 46 46 H 1.09002 * 109.47230 * 56.16559 * 15 14 7 47 47 H 0.97001 * 119.99894 * 179.97438 * 20 19 17 48 48 H 1.09001 * 117.50325 * 359.97438 * 25 16 15 49 49 H 1.08999 * 117.50000 * 145.01891 * 25 16 15 50 50 H 1.09000 * 117.49835 * 214.98254 * 26 16 15 51 51 H 1.08995 * 117.49818 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7408 3.4230 0.6320 6 6 2.7252 3.3761 -0.7123 7 6 3.1230 4.4967 -1.6380 8 1 3.4141 5.3697 -1.0539 9 6 1.9397 4.8569 -2.5551 10 6 2.0514 6.1992 -3.1156 11 6 3.3140 6.3475 -3.9939 12 6 4.5146 6.4993 -3.0985 13 6 5.1899 5.1563 -2.7680 14 7 4.2274 4.0750 -2.4656 15 6 4.9084 2.9116 -1.8820 16 6 6.0096 2.4358 -2.8316 17 6 5.5587 2.0863 -4.2265 18 1 5.9022 2.6706 -5.0673 19 6 4.7077 1.0206 -4.4292 20 7 4.1195 0.8613 -5.5946 21 14 4.3904 -0.1970 -3.0486 22 1 3.2630 0.2866 -2.2116 23 1 4.0459 -1.5211 -3.6259 24 1 5.6099 -0.3242 -2.2108 25 6 7.1532 1.6150 -2.2324 26 6 7.3974 3.0603 -2.6734 27 8 2.2946 2.1611 -1.0895 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1847 1.8544 2.1204 34 1 3.0339 4.2638 1.2432 35 1 1.8954 4.1369 -3.3721 36 1 1.0160 4.7913 -1.9802 37 1 1.1698 6.4056 -3.7225 38 1 2.0992 6.9218 -2.3010 39 1 3.4323 5.4604 -4.6161 40 1 3.2158 7.2283 -4.6286 41 1 5.2408 7.1455 -3.5916 42 1 4.2011 6.9730 -2.1682 43 1 5.8008 4.8534 -3.6184 44 1 5.8394 5.2949 -1.9036 45 1 5.3495 3.1911 -0.9251 46 1 4.1881 2.1078 -1.7291 47 1 3.5211 0.1114 -5.7374 48 1 7.1214 1.4141 -1.1615 49 1 7.5798 0.8224 -2.8472 50 1 7.9845 3.2180 -3.5782 51 1 7.5260 3.8097 -1.8925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653415639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:29 Heat of formation + Delta-G solvation = 43.381580 kcal Electronic energy + Delta-G solvation = -29487.019366 eV Core-core repulsion = 25967.813907 eV Total energy + Delta-G solvation = -3519.205459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.43707 -38.98865 -36.70588 -34.24871 -33.58109 -32.69688 -31.98099 -31.89378 -28.41018 -27.21232 -25.43891 -24.98865 -23.65273 -22.87807 -21.52166 -21.29943 -20.29315 -19.88144 -19.19243 -18.68441 -16.75722 -16.39326 -15.72085 -15.22090 -15.01444 -14.72363 -14.28989 -14.19097 -13.94028 -13.67189 -13.59160 -12.98708 -12.96237 -12.88879 -12.57035 -12.48011 -12.31876 -12.24208 -12.07528 -11.66289 -11.49981 -11.35023 -11.12983 -10.96470 -10.72130 -10.54730 -10.40838 -10.28913 -10.22024 -10.10391 -10.03041 -9.89938 -9.53590 -9.30956 -8.92777 -8.45458 -8.20646 -7.96394 -7.33391 -5.92944 -3.87523 2.03550 2.86376 3.20449 3.44293 3.51333 3.57188 4.40736 4.61023 4.72312 4.95366 5.05671 5.08926 5.17575 5.22928 5.25737 5.31319 5.37472 5.41887 5.49465 5.53783 5.59420 5.74907 5.79812 5.86996 5.89753 5.91904 6.00933 6.05809 6.10767 6.13184 6.15191 6.21658 6.26697 6.29276 6.32153 6.38677 6.43192 6.48798 6.54140 6.58909 6.64237 6.77403 6.80079 6.83414 6.88048 6.94829 7.18864 7.20544 7.54862 7.79231 7.99386 8.02937 8.67688 9.09353 9.74053 11.19269 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009435 B = 0.007987 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.014236 B = 3504.723035 C = 4923.574064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.051 4.051 3 C -0.010 4.010 4 C -0.216 4.216 5 C -0.219 4.219 6 C 0.006 3.994 7 C 0.174 3.826 8 H 0.066 0.934 9 C -0.110 4.110 10 C -0.108 4.108 11 C -0.116 4.116 12 C -0.118 4.118 13 C 0.071 3.929 14 N -0.510 5.510 15 C 0.092 3.908 16 C 0.011 3.989 17 C -0.462 4.462 18 H 0.072 0.928 19 C 0.089 3.911 20 N -0.896 5.896 21 Si 0.850 3.150 22 H -0.255 1.255 23 H -0.300 1.300 24 H -0.259 1.259 25 C -0.198 4.198 26 C -0.189 4.189 27 O -0.146 6.146 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.019 0.981 45 H 0.003 0.997 46 H 0.084 0.916 47 H 0.260 0.740 48 H 0.063 0.937 49 H 0.085 0.915 50 H 0.083 0.917 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 6.312 11.485 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 C -0.061 4.061 4 C -0.235 4.235 5 C -0.239 4.239 6 C -0.045 4.045 7 C 0.066 3.934 8 H 0.084 0.916 9 C -0.149 4.149 10 C -0.145 4.145 11 C -0.153 4.153 12 C -0.156 4.156 13 C -0.056 4.056 14 N -0.234 5.234 15 C -0.035 4.035 16 C 0.010 3.990 17 C -0.499 4.499 18 H 0.090 0.910 19 C -0.113 4.113 20 N -0.533 5.533 21 Si 0.678 3.322 22 H -0.180 1.180 23 H -0.227 1.227 24 H -0.183 1.183 25 C -0.236 4.236 26 C -0.226 4.226 27 O -0.041 6.041 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.103 0.897 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.037 0.963 45 H 0.021 0.979 46 H 0.102 0.898 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.101 0.899 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.473 5.984 10.640 13.378 hybrid contribution 0.281 -0.444 1.798 1.873 sum -5.192 5.540 12.438 14.572 Atomic orbital electron populations 1.21759 0.94086 1.02027 1.02495 1.20194 0.96301 0.88206 1.04155 1.22375 1.04055 0.95100 0.84539 1.21391 1.08628 0.94632 0.98886 1.21449 1.09396 0.99401 0.93690 1.22469 1.02101 0.85895 0.94004 1.19961 0.93217 0.89982 0.90288 0.91590 1.20540 0.95897 0.98429 0.99994 1.20504 0.98422 0.96820 0.98801 1.21335 0.93480 1.02515 0.97992 1.21415 0.98104 0.96815 0.99241 1.22388 0.93308 0.89282 1.00633 1.60623 1.10044 1.06659 1.46055 1.22053 0.96647 0.92165 0.92590 1.19435 0.85143 0.98053 0.96348 1.20005 1.27564 1.13510 0.88780 0.90960 1.24737 0.94163 0.97537 0.94875 1.69945 1.29162 1.30290 1.23931 0.87301 0.80224 0.80605 0.84104 1.18022 1.22727 1.18329 1.23067 1.08210 0.93976 0.98369 1.22851 1.03347 0.95040 1.01354 1.84276 1.64108 1.21690 1.34074 0.92156 0.91864 0.92407 0.89771 0.89292 0.84079 0.84152 0.89730 0.92891 0.92365 0.93236 0.89463 0.92895 0.91968 0.93344 0.89137 0.96303 0.97942 0.89849 0.93067 0.91885 0.89661 0.89875 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.89 37.16 0.37 -1.36 16 2 C -0.05 -0.73 6.44 -27.88 -0.18 -0.91 16 3 C -0.01 -0.17 6.28 -35.63 -0.22 -0.39 16 4 C -0.22 -3.35 10.81 -39.70 -0.43 -3.78 16 5 C -0.22 -3.54 10.79 -39.70 -0.43 -3.96 16 6 C 0.01 0.12 3.93 -35.63 -0.14 -0.02 16 7 C 0.17 3.02 2.42 -69.74 -0.17 2.85 16 8 H 0.07 1.04 6.76 -51.93 -0.35 0.69 16 9 C -0.11 -1.80 4.81 -29.59 -0.14 -1.94 16 10 C -0.11 -1.49 5.35 -29.30 -0.16 -1.65 16 11 C -0.12 -1.71 5.63 -27.17 -0.15 -1.86 16 12 C -0.12 -1.69 5.28 -27.49 -0.14 -1.84 16 13 C 0.07 1.25 4.22 -2.80 -0.01 1.24 16 14 N -0.51 -10.12 3.80 -227.99 -0.87 -10.98 16 15 C 0.09 2.01 3.53 -3.83 -0.01 2.00 16 16 C 0.01 0.27 0.16 -155.66 -0.03 0.24 16 17 C -0.46 -12.73 8.97 -34.43 -0.31 -13.04 16 18 H 0.07 2.19 8.06 -52.49 -0.42 1.77 16 19 C 0.09 2.55 5.45 -17.82 -0.10 2.45 16 20 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 21 Si 0.85 21.36 25.38 -169.99 -4.31 17.04 16 22 H -0.25 -6.10 3.90 56.52 0.22 -5.88 16 23 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 24 H -0.26 -6.35 5.76 56.52 0.33 -6.02 16 25 C -0.20 -4.35 7.82 -26.70 -0.21 -4.56 16 26 C -0.19 -3.88 8.34 -26.69 -0.22 -4.10 16 27 O -0.15 -2.95 7.63 5.68 0.04 -2.91 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.34 6.89 -51.93 -0.36 0.99 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 35 H 0.08 1.65 8.08 -51.93 -0.42 1.23 16 36 H 0.05 0.80 7.94 -51.93 -0.41 0.39 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.61 7.58 -51.93 -0.39 0.22 16 39 H 0.09 1.59 7.79 -51.93 -0.40 1.18 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.63 6.66 -51.93 -0.35 0.29 16 43 H 0.09 1.80 6.71 -51.93 -0.35 1.46 16 44 H 0.02 0.32 7.48 -51.92 -0.39 -0.07 16 45 H 0.00 0.05 8.05 -51.93 -0.42 -0.36 16 46 H 0.08 1.96 2.54 -51.93 -0.13 1.82 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 50 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 51 H 0.07 1.24 7.61 -51.93 -0.40 0.84 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -30.42 375.65 -10.65 -41.06 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -9.25 Total: 7.29 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: -2.69 Total: -30.63 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.09 Total: -37.52 kcal Atomic # 8 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.31 Total: 17.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.42 -10.65 -41.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653415639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.444 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds