Wall clock time and date at job start Tue Mar 31 2020 12:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 109.47118 * 2 1 4 4 C 1.34509 * 125.78971 * 89.99835 * 3 2 1 5 5 C 1.41385 * 106.83969 * 179.97438 * 4 3 2 6 6 C 1.34516 * 106.84387 * 359.97438 * 5 4 3 7 7 C 1.50694 * 125.79348 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.69349 * 359.06687 * 7 6 5 9 9 C 1.53985 * 109.69495 * 238.51685 * 7 6 5 10 10 C 1.45885 * 112.65878 * 158.90233 * 9 7 6 11 11 C 1.54518 * 111.67199 * 61.49856 * 10 9 7 12 12 C 1.50536 * 108.86195 * 282.74755 * 11 10 9 13 13 C 1.53915 * 112.93068 * 91.75981 * 12 11 10 14 14 N 1.44309 * 109.69274 * 119.61312 * 7 6 5 15 15 C 1.46896 * 111.00053 * 341.06083 * 14 7 6 16 16 C 1.53000 * 109.47295 * 176.16831 * 15 14 7 17 17 C 1.50710 * 115.54553 * 303.26336 * 16 15 14 18 18 H 1.07995 * 119.99601 * 114.84661 * 17 16 15 19 19 C 1.37880 * 119.99811 * 294.84041 * 17 16 15 20 20 N 1.31511 * 119.99440 * 167.46631 * 19 17 16 21 21 Si 1.86793 * 120.00117 * 347.46370 * 19 17 16 22 22 H 1.48504 * 109.47072 * 87.70846 * 21 19 17 23 23 H 1.48503 * 109.47009 * 207.70340 * 21 19 17 24 24 H 1.48499 * 109.47309 * 327.70807 * 21 19 17 25 25 C 1.52991 * 117.50111 * 157.59579 * 16 15 14 26 26 C 1.52999 * 117.50106 * 88.93265 * 16 15 14 27 27 O 1.34305 * 125.78546 * 269.97407 * 3 2 1 28 28 H 1.09003 * 109.46945 * 60.00149 * 1 2 3 29 29 H 1.09003 * 109.47192 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47217 * 300.00254 * 1 2 3 31 31 H 1.08997 * 109.47217 * 239.99746 * 2 1 3 32 32 H 1.09003 * 109.46945 * 119.99851 * 2 1 3 33 33 H 1.07997 * 126.58206 * 359.94721 * 4 3 2 34 34 H 1.08004 * 126.57970 * 179.73344 * 5 4 3 35 35 H 1.08995 * 108.84901 * 279.71856 * 9 7 6 36 36 H 1.08997 * 108.84532 * 38.08577 * 9 7 6 37 37 H 1.08997 * 109.03877 * 182.06490 * 10 9 7 38 38 H 1.09004 * 109.03708 * 301.00850 * 10 9 7 39 39 H 1.09001 * 109.57213 * 42.56886 * 11 10 9 40 40 H 1.09006 * 109.56599 * 162.81205 * 11 10 9 41 41 H 1.08999 * 108.78654 * 212.64644 * 12 11 10 42 42 H 1.08994 * 108.79339 * 330.86882 * 12 11 10 43 43 H 1.09000 * 108.71582 * 78.75423 * 13 12 11 44 44 H 1.09010 * 108.70865 * 196.88451 * 13 12 11 45 45 H 1.09006 * 109.47001 * 296.16628 * 15 14 7 46 46 H 1.09002 * 109.47230 * 56.16559 * 15 14 7 47 47 H 0.97001 * 119.99894 * 179.97438 * 20 19 17 48 48 H 1.09001 * 117.50325 * 359.97438 * 25 16 15 49 49 H 1.08999 * 117.50000 * 145.01891 * 25 16 15 50 50 H 1.09000 * 117.49835 * 214.98254 * 26 16 15 51 51 H 1.08995 * 117.49818 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7408 3.4230 0.6320 6 6 2.7252 3.3761 -0.7123 7 6 3.1230 4.4967 -1.6380 8 1 3.4141 5.3697 -1.0539 9 6 1.9397 4.8569 -2.5551 10 6 2.0514 6.1992 -3.1156 11 6 3.3140 6.3475 -3.9939 12 6 4.5146 6.4993 -3.0985 13 6 5.1899 5.1563 -2.7680 14 7 4.2274 4.0750 -2.4656 15 6 4.9084 2.9116 -1.8820 16 6 6.0096 2.4358 -2.8316 17 6 5.5587 2.0863 -4.2265 18 1 5.9022 2.6706 -5.0673 19 6 4.7077 1.0206 -4.4292 20 7 4.1195 0.8613 -5.5946 21 14 4.3904 -0.1970 -3.0486 22 1 3.2630 0.2866 -2.2116 23 1 4.0459 -1.5211 -3.6259 24 1 5.6099 -0.3242 -2.2108 25 6 7.1532 1.6150 -2.2324 26 6 7.3974 3.0603 -2.6734 27 8 2.2946 2.1611 -1.0895 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1847 1.8544 2.1204 34 1 3.0339 4.2638 1.2432 35 1 1.8954 4.1369 -3.3721 36 1 1.0160 4.7913 -1.9802 37 1 1.1698 6.4056 -3.7225 38 1 2.0992 6.9218 -2.3010 39 1 3.4323 5.4604 -4.6161 40 1 3.2158 7.2283 -4.6286 41 1 5.2408 7.1455 -3.5916 42 1 4.2011 6.9730 -2.1682 43 1 5.8008 4.8534 -3.6184 44 1 5.8394 5.2949 -1.9036 45 1 5.3495 3.1911 -0.9251 46 1 4.1881 2.1078 -1.7291 47 1 3.5211 0.1114 -5.7374 48 1 7.1214 1.4141 -1.1615 49 1 7.5798 0.8224 -2.8472 50 1 7.9845 3.2180 -3.5782 51 1 7.5260 3.8097 -1.8925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653415639.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:28 Heat of formation + Delta-G solvation = 26.794025 kcal Electronic energy + Delta-G solvation = -29487.738657 eV Core-core repulsion = 25967.813907 eV Total energy + Delta-G solvation = -3519.924749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.70679 -40.40684 -38.35803 -35.41654 -34.88836 -34.14786 -33.96992 -33.15244 -29.67128 -28.70760 -27.44154 -26.21590 -25.13006 -24.04427 -23.17497 -22.59570 -21.52133 -21.20840 -20.75885 -20.26618 -18.42711 -17.84102 -17.38249 -16.63555 -16.37630 -16.31324 -15.73471 -15.40183 -15.34356 -15.14186 -14.88685 -14.75935 -14.33202 -14.26740 -14.01660 -13.77845 -13.58481 -13.53558 -13.32762 -13.24002 -12.93673 -12.75625 -12.55537 -12.41544 -12.21837 -12.05648 -12.03473 -11.89177 -11.64955 -11.48482 -11.36280 -11.31317 -11.15037 -10.87778 -10.70503 -10.40731 -10.19421 -9.21481 -8.77828 -8.18023 -6.14676 0.77370 1.37978 1.42210 1.50918 1.68333 2.05718 2.47844 2.91377 3.19496 3.41245 3.55503 3.83447 3.85460 3.99570 4.06569 4.12294 4.17203 4.21619 4.28220 4.29548 4.32640 4.35888 4.47352 4.52832 4.57361 4.58655 4.73978 4.80172 4.81309 4.83063 4.87185 4.89183 4.93130 4.99885 5.07808 5.08389 5.11654 5.14944 5.18766 5.27394 5.33610 5.37967 5.39756 5.44210 5.48957 5.53366 5.67228 5.68591 5.80433 6.29972 6.32191 6.47626 6.63992 6.85257 7.49656 8.97761 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009435 B = 0.007987 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2967.014236 B = 3504.723035 C = 4923.574064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.056 4.056 3 C -0.033 4.033 4 C -0.210 4.210 5 C -0.209 4.209 6 C -0.024 4.024 7 C 0.175 3.825 8 H 0.092 0.908 9 C -0.101 4.101 10 C -0.105 4.105 11 C -0.113 4.113 12 C -0.112 4.112 13 C 0.073 3.927 14 N -0.535 5.535 15 C 0.105 3.895 16 C -0.013 4.013 17 C -0.451 4.451 18 H 0.026 0.974 19 C 0.035 3.965 20 N -0.946 5.946 21 Si 0.908 3.092 22 H -0.241 1.241 23 H -0.310 1.310 24 H -0.244 1.244 25 C -0.195 4.195 26 C -0.164 4.164 27 O -0.185 6.185 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.036 0.964 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.031 0.969 45 H 0.014 0.986 46 H 0.067 0.933 47 H 0.257 0.743 48 H 0.085 0.915 49 H 0.072 0.928 50 H 0.077 0.923 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 7.878 15.650 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 C -0.083 4.083 4 C -0.228 4.228 5 C -0.228 4.228 6 C -0.075 4.075 7 C 0.067 3.933 8 H 0.110 0.890 9 C -0.140 4.140 10 C -0.142 4.142 11 C -0.151 4.151 12 C -0.150 4.150 13 C -0.054 4.054 14 N -0.260 5.260 15 C -0.022 4.022 16 C -0.015 4.015 17 C -0.488 4.488 18 H 0.044 0.956 19 C -0.162 4.162 20 N -0.587 5.587 21 Si 0.735 3.265 22 H -0.165 1.165 23 H -0.238 1.238 24 H -0.168 1.168 25 C -0.234 4.234 26 C -0.201 4.201 27 O -0.082 6.082 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.191 0.809 34 H 0.186 0.814 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.032 0.968 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.103 0.897 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.513 7.572 14.826 17.537 hybrid contribution 0.321 -0.888 0.430 1.037 sum -5.192 6.684 15.256 17.446 Atomic orbital electron populations 1.21731 0.92505 1.03340 1.02190 1.20374 0.97744 0.86912 1.04244 1.23042 1.04578 0.96178 0.84525 1.21771 1.07231 0.93999 0.99847 1.21823 1.07751 1.00323 0.92951 1.22726 1.03857 0.85801 0.95068 1.20044 0.92150 0.90772 0.90335 0.89012 1.20468 0.96397 0.98587 0.98532 1.20497 0.98245 0.95904 0.99556 1.21283 0.94569 1.01196 0.98058 1.21392 0.97983 0.95158 1.00437 1.22339 0.93249 0.90177 0.99610 1.60465 1.10992 1.07169 1.47376 1.21779 0.95437 0.92655 0.92331 1.19343 0.86973 1.00570 0.94568 1.20104 1.26505 1.12098 0.90095 0.95562 1.25469 0.94340 0.99466 0.96961 1.70098 1.30955 1.31247 1.26392 0.86381 0.81046 0.77589 0.81533 1.16543 1.23807 1.16751 1.23062 1.06606 0.94419 0.99280 1.22848 1.00558 0.94951 1.01744 1.84232 1.65081 1.22904 1.35986 0.94250 0.89766 0.90849 0.92337 0.86385 0.80946 0.81450 0.94516 0.91929 0.91468 0.90211 0.94276 0.90696 0.90338 0.90704 0.92676 0.95036 0.96810 0.91523 0.93435 0.89688 0.90907 0.90479 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.89 71.98 0.71 -2.37 16 2 C -0.06 -1.50 6.44 29.85 0.19 -1.30 16 3 C -0.03 -1.08 6.28 24.83 0.16 -0.92 16 4 C -0.21 -5.78 10.81 22.19 0.24 -5.54 16 5 C -0.21 -6.01 10.79 22.19 0.24 -5.77 16 6 C -0.02 -0.85 3.93 24.83 0.10 -0.75 16 7 C 0.18 5.82 2.42 44.98 0.11 5.93 16 8 H 0.09 2.54 6.76 -2.39 -0.02 2.52 16 9 C -0.10 -3.29 4.81 28.75 0.14 -3.15 16 10 C -0.10 -2.72 5.35 28.93 0.15 -2.56 16 11 C -0.11 -3.26 5.63 30.31 0.17 -3.09 16 12 C -0.11 -2.97 5.28 30.11 0.16 -2.81 16 13 C 0.07 2.51 4.22 86.42 0.37 2.87 16 14 N -0.54 -21.17 3.80 -875.22 -3.33 -24.50 16 15 C 0.11 4.51 3.53 86.30 0.30 4.81 16 16 C -0.01 -0.62 0.16 -52.93 -0.01 -0.63 16 17 C -0.45 -26.09 8.97 25.60 0.23 -25.86 16 18 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 19 C 0.03 2.08 5.45 84.66 0.46 2.54 16 20 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 21 Si 0.91 45.95 25.38 68.60 1.74 47.69 16 22 H -0.24 -11.62 3.90 99.48 0.39 -11.23 16 23 H -0.31 -16.01 7.11 99.48 0.71 -15.31 16 24 H -0.24 -11.57 5.76 99.48 0.57 -11.00 16 25 C -0.20 -8.29 7.82 30.62 0.24 -8.05 16 26 C -0.16 -6.52 8.34 30.62 0.26 -6.27 16 27 O -0.19 -7.42 7.63 -2.59 -0.02 -7.44 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.85 6.89 -2.39 -0.02 1.83 16 32 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 34 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.04 1.52 8.08 -2.39 -0.02 1.50 16 36 H 0.06 1.87 7.94 -2.39 -0.02 1.85 16 37 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 1.64 7.58 -2.39 -0.02 1.63 16 39 H 0.04 1.50 7.79 -2.39 -0.02 1.48 16 40 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.07 1.63 6.66 -2.39 -0.02 1.61 16 43 H 0.05 2.25 6.71 -2.39 -0.02 2.23 16 44 H 0.03 0.99 7.48 -2.38 -0.02 0.97 16 45 H 0.01 0.56 8.05 -2.38 -0.02 0.54 16 46 H 0.07 3.10 2.54 -2.39 -0.01 3.10 16 47 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 48 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 49 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 50 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 51 H 0.10 3.27 7.61 -2.39 -0.02 3.25 16 Total: -1.00 -71.60 375.65 3.34 -68.26 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.43 Total: 29.99 kcal Atomic # 6 Polarization: -57.16 SS G_CDS: 4.22 Total: -52.94 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -3.03 Total: -85.56 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.02 Total: -7.44 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.74 Total: 47.69 kcal Total: -71.60 3.34 -68.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653415639.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.058 kcal (2) G-P(sol) polarization free energy of solvation -71.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds