Wall clock time and date at job start Tue Mar 31 2020 12:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47210 * 2 1 4 4 C 1.34513 * 125.79034 * 90.00124 * 3 2 1 5 5 C 1.41376 * 106.84167 * 179.75300 * 4 3 2 6 6 C 1.34522 * 106.83958 * 0.36663 * 5 4 3 7 7 C 1.50703 * 125.78954 * 179.88699 * 6 5 4 8 8 H 1.08996 * 109.74096 * 349.38234 * 7 6 5 9 9 C 1.50817 * 109.78645 * 110.08706 * 7 6 5 10 10 C 1.53813 * 111.61854 * 214.72973 * 9 7 6 11 11 C 1.54263 * 112.02605 * 318.99680 * 10 9 7 12 12 C 1.50751 * 112.56352 * 318.61041 * 11 10 9 13 13 C 1.54446 * 109.10886 * 92.91268 * 12 11 10 14 14 N 1.39780 * 111.75583 * 282.57622 * 13 12 11 15 15 C 1.46901 * 110.99699 * 189.13879 * 14 13 12 16 16 C 1.53001 * 109.46863 * 64.73973 * 15 14 13 17 17 C 1.50694 * 115.55086 * 269.84735 * 16 15 14 18 18 H 1.08005 * 120.00078 * 115.15699 * 17 16 15 19 19 C 1.37881 * 120.00262 * 295.15346 * 17 16 15 20 20 N 1.31516 * 119.99937 * 353.02929 * 19 17 16 21 21 Si 1.86793 * 120.00198 * 173.03053 * 19 17 16 22 22 H 1.48502 * 109.47314 * 89.99830 * 21 19 17 23 23 H 1.48498 * 109.47340 * 210.00265 * 21 19 17 24 24 H 1.48508 * 109.47143 * 329.99879 * 21 19 17 25 25 C 1.53004 * 117.49704 * 124.14318 * 16 15 14 26 26 C 1.53000 * 59.99945 * 252.51124 * 25 16 15 27 27 O 1.34303 * 125.78480 * 269.97476 * 3 2 1 28 28 H 1.09002 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47268 * 300.00302 * 1 2 3 30 30 H 1.09000 * 109.46872 * 60.00365 * 1 2 3 31 31 H 1.09001 * 109.47268 * 239.99698 * 2 1 3 32 32 H 1.09002 * 109.47276 * 119.99975 * 2 1 3 33 33 H 1.08005 * 126.57821 * 359.97438 * 4 3 2 34 34 H 1.08000 * 126.58332 * 180.23938 * 5 4 3 35 35 H 1.09002 * 109.05067 * 335.27933 * 9 7 6 36 36 H 1.08999 * 109.05257 * 94.24625 * 9 7 6 37 37 H 1.09004 * 108.98471 * 79.68549 * 10 9 7 38 38 H 1.08999 * 108.98698 * 198.40127 * 10 9 7 39 39 H 1.09001 * 108.99393 * 197.73917 * 11 10 9 40 40 H 1.09007 * 108.77050 * 79.33201 * 11 10 9 41 41 H 1.08991 * 109.54361 * 333.00277 * 12 11 10 42 42 H 1.09004 * 109.54534 * 212.82268 * 12 11 10 43 43 H 1.08995 * 109.02196 * 43.16421 * 13 12 11 44 44 H 1.09004 * 109.01863 * 161.99635 * 13 12 11 45 45 H 1.08994 * 109.46822 * 184.73502 * 15 14 13 46 46 H 1.09000 * 109.47324 * 304.74265 * 15 14 13 47 47 H 0.96999 * 120.00030 * 185.04914 * 20 19 17 48 48 H 1.08997 * 117.49957 * 359.97438 * 25 16 15 49 49 H 1.09001 * 117.50003 * 145.01634 * 25 16 15 50 50 H 1.09004 * 117.49726 * 252.51370 * 26 25 16 51 51 H 1.08995 * 117.52138 * 107.48213 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2946 2.1625 1.0911 5 6 2.7458 3.4212 0.6320 6 6 2.7246 3.3763 -0.7123 7 6 3.1219 4.4971 -1.6379 8 1 3.2522 5.4168 -1.0677 9 6 4.4093 4.1466 -2.3410 10 6 5.2852 5.3896 -2.5725 11 6 4.4517 6.6108 -3.0126 12 6 3.3799 6.2507 -4.0097 13 6 2.0650 5.9569 -3.2547 14 7 2.0785 4.6900 -2.6643 15 6 0.7521 4.3400 -2.1389 16 6 -0.2404 4.2219 -3.2973 17 6 -0.9646 5.4914 -3.6646 18 1 -0.8025 5.9453 -4.6312 19 6 -1.8342 6.0734 -2.7669 20 7 -2.1373 5.4524 -1.6479 21 14 -2.5820 7.7440 -3.1399 22 1 -3.8579 7.5617 -3.8775 23 1 -2.8441 8.4642 -1.8680 24 1 -1.6384 8.5344 -3.9708 25 6 -1.0056 2.9048 -3.4405 26 6 0.1078 3.2541 -4.4300 27 8 2.2946 2.1611 -1.0895 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.1852 1.8542 2.1204 34 1 3.0475 4.2589 1.2433 35 1 4.9623 3.4297 -1.7341 36 1 4.1765 3.6922 -3.3040 37 1 5.8083 5.6321 -1.6475 38 1 6.0203 5.1665 -3.3457 39 1 5.1153 7.3505 -3.4605 40 1 3.9811 7.0499 -2.1328 41 1 3.6846 5.3662 -4.5690 42 1 3.2274 7.0824 -4.6976 43 1 1.9254 6.7092 -2.4785 44 1 1.2325 6.0131 -3.9561 45 1 0.8099 3.3878 -1.6116 46 1 0.4171 5.1165 -1.4512 47 1 -2.8041 5.8264 -1.0509 48 1 -0.8017 2.1222 -2.7097 49 1 -2.0332 2.9563 -3.8003 50 1 -0.1873 3.5355 -5.4409 51 1 1.0441 2.7019 -4.3502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001653415640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:31 Heat of formation + Delta-G solvation = 23.587160 kcal Electronic energy + Delta-G solvation = -29107.466781 eV Core-core repulsion = 25587.402971 eV Total energy + Delta-G solvation = -3520.063810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.65622 -40.52422 -38.09582 -35.24945 -34.78536 -34.13037 -34.04205 -33.01314 -29.43184 -28.47906 -27.65300 -26.05770 -25.09786 -24.04712 -22.86939 -22.57816 -21.85591 -21.13984 -20.51797 -20.18934 -18.21471 -17.80314 -17.22333 -16.68317 -16.37080 -16.04458 -15.98498 -15.64112 -15.23784 -15.15588 -14.87206 -14.65331 -14.38884 -13.98142 -13.69172 -13.64867 -13.49275 -13.25586 -13.15322 -13.11297 -12.91435 -12.83982 -12.50287 -12.40083 -12.35433 -12.11913 -12.01543 -11.96314 -11.80350 -11.46191 -11.23967 -11.13314 -11.10293 -10.81908 -10.65856 -10.42452 -9.95170 -9.15515 -8.93810 -8.09263 -6.17404 0.81239 1.36867 1.39430 1.48058 1.69897 2.03203 2.40472 3.04362 3.15193 3.53174 3.73421 3.89939 3.94835 4.08444 4.13492 4.15898 4.22965 4.26017 4.32476 4.37470 4.42733 4.54051 4.59045 4.63359 4.71964 4.78761 4.84214 4.87488 4.90119 4.92198 4.97744 4.98781 5.04939 5.05625 5.12750 5.15413 5.20380 5.24444 5.28015 5.34431 5.35946 5.37936 5.47978 5.53044 5.60569 5.64582 5.66687 5.67978 5.86368 6.25699 6.43789 6.45603 6.72205 6.91313 7.46419 8.97785 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.006497 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.764769 B = 4308.633466 C = 6071.363133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.027 4.027 4 C -0.218 4.218 5 C -0.224 4.224 6 C -0.008 4.008 7 C 0.171 3.829 8 H 0.066 0.934 9 C -0.102 4.102 10 C -0.107 4.107 11 C -0.120 4.120 12 C -0.110 4.110 13 C 0.074 3.926 14 N -0.532 5.532 15 C 0.127 3.873 16 C 0.038 3.962 17 C -0.498 4.498 18 H 0.054 0.946 19 C 0.026 3.974 20 N -0.906 5.906 21 Si 0.940 3.060 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 C -0.182 4.182 26 C -0.163 4.163 27 O -0.178 6.178 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.085 0.915 32 H 0.120 0.880 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.042 0.958 41 H 0.073 0.927 42 H 0.071 0.929 43 H -0.011 1.011 44 H 0.078 0.922 45 H 0.051 0.949 46 H 0.000 1.000 47 H 0.257 0.743 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.073 0.927 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 -5.721 3.029 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.074 4.074 3 C -0.077 4.077 4 C -0.236 4.236 5 C -0.244 4.244 6 C -0.059 4.059 7 C 0.064 3.936 8 H 0.083 0.917 9 C -0.140 4.140 10 C -0.144 4.144 11 C -0.157 4.157 12 C -0.148 4.148 13 C -0.056 4.056 14 N -0.257 5.257 15 C 0.000 4.000 16 C 0.037 3.963 17 C -0.535 4.535 18 H 0.072 0.928 19 C -0.174 4.174 20 N -0.544 5.544 21 Si 0.766 3.234 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 C -0.221 4.221 26 C -0.201 4.201 27 O -0.075 6.075 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.139 0.861 33 H 0.184 0.816 34 H 0.172 0.828 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.007 0.993 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.018 0.982 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.091 0.909 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.899 -6.030 2.573 15.368 hybrid contribution -1.421 1.655 0.934 2.373 sum 12.478 -4.375 3.508 13.680 Atomic orbital electron populations 1.21775 0.94320 1.03116 1.01353 1.20218 0.95883 0.85920 1.05373 1.23171 1.03748 0.96638 0.84117 1.21749 1.07624 0.94055 1.00218 1.21786 1.08560 1.00345 0.93690 1.22407 1.02974 0.85977 0.94501 1.20033 0.93096 0.91011 0.89468 0.91659 1.21398 0.93062 0.98745 1.00838 1.21875 0.97360 0.93217 1.01995 1.21454 0.97538 0.98241 0.98492 1.21466 0.93504 1.01850 0.97976 1.21076 0.99731 0.87395 0.97371 1.59102 1.04253 1.29913 1.32390 1.21366 0.86406 0.97226 0.94983 1.18820 0.95027 0.88903 0.93500 1.20716 1.24973 1.07558 1.00299 0.92819 1.25616 0.96974 1.00035 0.94773 1.70110 1.32005 1.40122 1.12152 0.85824 0.79022 0.81139 0.77404 1.20248 1.21413 1.18911 1.22619 0.95265 1.01397 1.02778 1.22618 0.97716 1.05415 0.94311 1.84079 1.64962 1.22702 1.35764 0.89157 0.92830 0.95021 0.89624 0.86141 0.81559 0.82834 0.91450 0.91140 0.91245 0.90232 0.90299 0.93882 0.90806 0.91027 0.99341 0.90370 0.93131 0.98217 0.93379 0.92164 0.92319 0.90882 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.89 71.98 0.71 -2.96 16 2 C -0.04 -0.85 6.47 29.85 0.19 -0.65 16 3 C -0.03 -0.83 6.57 24.83 0.16 -0.67 16 4 C -0.22 -6.52 10.81 22.19 0.24 -6.29 16 5 C -0.22 -7.37 10.79 22.19 0.24 -7.13 16 6 C -0.01 -0.30 4.02 24.84 0.10 -0.20 16 7 C 0.17 5.84 2.33 43.32 0.10 5.94 16 8 H 0.07 2.24 6.64 -2.39 -0.02 2.22 16 9 C -0.10 -2.81 4.98 30.16 0.15 -2.66 16 10 C -0.11 -2.33 5.91 31.30 0.19 -2.14 16 11 C -0.12 -2.91 5.32 30.29 0.16 -2.75 16 12 C -0.11 -3.23 5.64 30.36 0.17 -3.06 16 13 C 0.07 2.90 4.69 88.08 0.41 3.31 16 14 N -0.53 -21.28 3.73 -892.29 -3.32 -24.61 16 15 C 0.13 6.15 4.37 86.30 0.38 6.52 16 16 C 0.04 1.93 0.88 -52.93 -0.05 1.89 16 17 C -0.50 -27.16 6.89 25.60 0.18 -26.98 16 18 H 0.05 2.92 7.64 -2.91 -0.02 2.90 16 19 C 0.03 1.45 5.20 84.66 0.44 1.89 16 20 N -0.91 -52.90 12.62 21.45 0.27 -52.63 16 21 Si 0.94 43.80 29.55 68.60 2.03 45.83 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 25 C -0.18 -9.00 9.88 30.60 0.30 -8.69 16 26 C -0.16 -7.38 9.74 30.59 0.30 -7.09 16 27 O -0.18 -6.64 8.96 -2.52 -0.02 -6.67 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 34 H 0.15 4.45 8.06 -2.91 -0.02 4.42 16 35 H 0.07 1.74 7.71 -2.39 -0.02 1.72 16 36 H 0.07 2.10 7.26 -2.39 -0.02 2.08 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.04 1.16 6.59 -2.38 -0.02 1.14 16 41 H 0.07 2.14 7.11 -2.39 -0.02 2.12 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H -0.01 -0.49 7.55 -2.39 -0.02 -0.51 16 44 H 0.08 3.56 5.12 -2.38 -0.01 3.55 16 45 H 0.05 2.51 4.49 -2.39 -0.01 2.50 16 46 H 0.00 -0.03 7.24 -2.39 -0.02 -0.04 16 47 H 0.26 14.45 8.32 -92.71 -0.77 13.68 16 48 H 0.06 2.90 8.03 -2.39 -0.02 2.88 16 49 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 50 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 51 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -63.55 388.08 4.21 -59.34 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.89 Total: 30.46 kcal Atomic # 6 Polarization: -56.10 SS G_CDS: 4.38 Total: -51.72 kcal Atomic # 7 Polarization: -74.19 SS G_CDS: -3.05 Total: -77.24 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.02 Total: -6.67 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -63.55 4.21 -59.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653415640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.928 kcal (2) G-P(sol) polarization free energy of solvation -63.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds