Wall clock time and date at job start Tue Mar 31 2020 11:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99868 * 2 1 4 4 C 1.52994 * 109.46881 * 180.93013 * 3 2 1 5 5 N 1.46901 * 109.47229 * 67.83815 * 4 3 2 6 6 C 1.46903 * 110.99878 * 284.92102 * 5 4 3 7 7 C 1.50704 * 109.46829 * 172.83394 * 6 5 4 8 8 H 1.07990 * 120.00165 * 354.54687 * 7 6 5 9 9 C 1.37876 * 119.99536 * 174.54654 * 7 6 5 10 10 N 1.31515 * 120.00298 * 352.97850 * 9 7 6 11 11 Si 1.86803 * 119.99798 * 172.96735 * 9 7 6 12 12 H 1.48508 * 109.46682 * 65.00595 * 11 9 7 13 13 H 1.48493 * 109.47103 * 185.00494 * 11 9 7 14 14 H 1.48496 * 109.47354 * 305.01247 * 11 9 7 15 15 C 1.46902 * 111.00068 * 160.96665 * 5 4 3 16 16 C 1.50697 * 109.47436 * 293.95547 * 15 5 4 17 17 C 1.32568 * 120.00189 * 124.99937 * 16 15 5 18 18 C 1.47815 * 119.99840 * 179.72420 * 17 16 15 19 19 C 1.39525 * 120.14021 * 310.00127 * 18 17 16 20 20 C 1.50698 * 120.07500 * 0.02562 * 19 18 17 21 21 C 1.37975 * 119.85487 * 179.77080 * 19 18 17 22 22 C 1.38346 * 120.14032 * 0.50578 * 21 19 18 23 23 C 1.50706 * 119.85751 * 179.72386 * 22 21 19 24 24 C 1.38346 * 120.28605 * 359.74575 * 22 21 19 25 25 C 1.37976 * 120.14124 * 359.97438 * 24 22 21 26 26 C 1.50695 * 120.07277 * 179.97438 * 25 24 22 27 27 H 1.08999 * 109.47129 * 183.73508 * 1 2 3 28 28 H 1.09005 * 109.46864 * 303.72685 * 1 2 3 29 29 H 1.08993 * 109.47418 * 63.72948 * 1 2 3 30 30 H 1.09000 * 109.46688 * 60.92787 * 3 2 1 31 31 H 1.09003 * 109.47224 * 300.93273 * 3 2 1 32 32 H 1.09002 * 109.47724 * 307.83726 * 4 3 2 33 33 H 1.09004 * 109.47286 * 187.83400 * 4 3 2 34 34 H 1.08997 * 109.47230 * 292.83392 * 6 5 4 35 35 H 1.09000 * 109.46827 * 52.83517 * 6 5 4 36 36 H 0.97001 * 119.99640 * 180.02562 * 10 9 7 37 37 H 1.09002 * 109.47164 * 173.95361 * 15 5 4 38 38 H 1.09001 * 109.46819 * 53.95561 * 15 5 4 39 39 H 1.08001 * 119.99453 * 304.99890 * 16 15 5 40 40 H 1.07999 * 119.99836 * 359.97438 * 17 16 15 41 41 H 1.09003 * 109.47094 * 90.00300 * 20 19 18 42 42 H 1.09003 * 109.47200 * 210.00353 * 20 19 18 43 43 H 1.08994 * 109.47040 * 330.00431 * 20 19 18 44 44 H 1.08001 * 119.93243 * 180.25333 * 21 19 18 45 45 H 1.08996 * 109.46903 * 270.01954 * 23 22 21 46 46 H 1.08997 * 109.46935 * 30.02200 * 23 22 21 47 47 H 1.08996 * 109.46691 * 150.02021 * 23 22 21 48 48 H 1.07997 * 119.93139 * 180.02562 * 24 22 21 49 49 H 1.09006 * 109.47333 * 270.02758 * 26 25 24 50 50 H 1.09004 * 109.47416 * 30.02429 * 26 25 24 51 51 H 1.09001 * 109.47155 * 150.02747 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5352 1.1848 -0.0234 5 7 3.9630 0.6338 -1.3162 6 6 3.6898 -0.8077 -1.3905 7 6 3.9764 -1.3021 -2.7850 8 1 4.2413 -0.6012 -3.5626 9 6 3.9003 -2.6494 -3.0678 10 7 3.7144 -3.5159 -2.0962 11 14 4.0612 -3.2439 -4.8314 12 1 5.4270 -2.9448 -5.3319 13 1 3.8248 -4.7090 -4.8833 14 1 3.0599 -2.5504 -5.6809 15 6 5.3837 0.9137 -1.5636 16 6 5.5827 2.3989 -1.7234 17 6 6.4604 3.0360 -0.9610 18 6 6.6599 4.4917 -1.1219 19 6 6.8824 5.0325 -2.3887 20 6 6.9194 4.1336 -3.5977 21 6 7.0632 6.3927 -2.5328 22 6 7.0346 7.2187 -1.4233 23 6 7.2391 8.7028 -1.5873 24 6 6.8197 6.6880 -0.1638 25 6 6.6318 5.3302 -0.0070 26 6 6.3984 4.7538 1.3657 27 1 -0.3633 -1.0255 0.0669 28 1 -0.3633 0.5706 0.8548 29 1 -0.3634 0.4548 -0.9214 30 1 1.7018 1.8405 0.8982 31 1 1.6754 1.8523 -0.8815 32 1 3.8597 0.5223 0.7791 33 1 3.9799 2.1701 0.1166 34 1 4.3261 -1.3352 -0.6800 35 1 2.6433 -0.9921 -1.1475 36 1 3.6613 -4.4638 -2.2953 37 1 5.7013 0.4046 -2.4736 38 1 5.9764 0.5562 -0.7216 39 1 5.0103 2.9443 -2.4591 40 1 7.0325 2.4906 -0.2250 41 1 5.9159 4.0424 -4.0135 42 1 7.5859 4.5602 -4.3474 43 1 7.2831 3.1482 -3.3068 44 1 7.2314 6.8132 -3.5133 45 1 8.3012 8.9342 -1.5071 46 1 6.8721 9.0142 -2.5652 47 1 6.6918 9.2331 -0.8080 48 1 6.7982 7.3381 0.6983 49 1 7.3550 4.4888 1.8160 50 1 5.8955 5.4928 1.9895 51 1 5.7758 3.8627 1.2846 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657303981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:36 Heat of formation + Delta-G solvation = -17.586861 kcal Electronic energy + Delta-G solvation = -26697.247359 eV Core-core repulsion = 23175.398110 eV Total energy + Delta-G solvation = -3521.849249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.80015 -37.90812 -36.40654 -34.73096 -33.57549 -32.57914 -31.70378 -29.47285 -27.96076 -27.64920 -26.74313 -26.28389 -25.41018 -23.90540 -22.12633 -20.88979 -20.67034 -19.74509 -19.16601 -16.59709 -16.11540 -15.76669 -15.72983 -15.54826 -14.88552 -14.49366 -14.44494 -14.25318 -13.87481 -13.65830 -13.42980 -13.18569 -13.17044 -13.01181 -12.94698 -12.65931 -12.58126 -12.43625 -11.90501 -11.88607 -11.68963 -11.33493 -11.28735 -11.17627 -11.06718 -10.94832 -10.84102 -10.73722 -10.64768 -10.49078 -10.15339 -9.77377 -9.29544 -9.19639 -8.77624 -8.54905 -8.31231 -7.94074 -7.16554 -5.92400 -3.91419 1.18866 1.40118 2.55593 3.37331 3.42053 3.45398 3.73801 4.35554 4.49807 4.73033 4.74027 4.83926 4.89993 5.08331 5.20985 5.24807 5.40923 5.41769 5.42862 5.44373 5.54723 5.55098 5.60176 5.63554 5.70914 5.72476 5.76856 5.77762 5.82970 5.84258 5.86560 5.94051 6.04885 6.06741 6.15154 6.21906 6.28219 6.34486 6.43110 6.50018 6.55882 6.60118 6.71682 6.97634 7.00378 7.09202 7.55398 7.61363 7.73304 7.89540 8.30273 8.36721 8.67519 9.16577 9.70162 11.18032 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012837 B = 0.003251 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.741041 B = 8609.685389 C =10031.843845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.070 3.930 4 C 0.054 3.946 5 N -0.530 5.530 6 C 0.183 3.817 7 C -0.509 4.509 8 H 0.060 0.940 9 C 0.057 3.943 10 N -0.895 5.895 11 Si 0.891 3.109 12 H -0.279 1.279 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.083 3.917 16 C -0.095 4.095 17 C -0.157 4.157 18 C -0.046 4.046 19 C -0.070 4.070 20 C -0.119 4.119 21 C -0.127 4.127 22 C -0.091 4.091 23 C -0.111 4.111 24 C -0.128 4.128 25 C -0.073 4.073 26 C -0.113 4.113 27 H 0.080 0.920 28 H 0.029 0.971 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.033 0.967 33 H 0.072 0.928 34 H -0.009 1.009 35 H 0.065 0.935 36 H 0.260 0.740 37 H 0.099 0.901 38 H 0.025 0.975 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.118 0.882 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.117 0.883 49 H 0.068 0.932 50 H 0.062 0.938 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 20.213 4.473 21.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.007 4.007 4 C -0.074 4.074 5 N -0.254 5.254 6 C 0.059 3.941 7 C -0.547 4.547 8 H 0.078 0.922 9 C -0.144 4.144 10 N -0.535 5.535 11 Si 0.719 3.281 12 H -0.205 1.205 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.044 4.044 16 C -0.113 4.113 17 C -0.176 4.176 18 C -0.046 4.046 19 C -0.070 4.070 20 C -0.175 4.175 21 C -0.145 4.145 22 C -0.091 4.091 23 C -0.168 4.168 24 C -0.146 4.146 25 C -0.073 4.073 26 C -0.170 4.170 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.009 0.991 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.117 0.883 38 H 0.043 0.957 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.136 0.864 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.135 0.865 49 H 0.086 0.914 50 H 0.081 0.919 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.754 20.053 4.140 20.817 hybrid contribution 0.341 -0.538 -0.303 0.706 sum 4.095 19.515 3.837 20.306 Atomic orbital electron populations 1.22649 0.82692 1.02171 0.98935 1.88161 1.18345 1.27201 1.94913 1.22513 0.94218 0.85080 0.98849 1.22068 0.93373 0.99326 0.92678 1.62190 1.15553 1.19793 1.27906 1.20089 0.98642 0.79181 0.96236 1.21170 1.46354 0.91746 0.95458 0.92226 1.24945 0.95783 0.96807 0.96887 1.69979 1.50423 1.01872 1.31193 0.86674 0.78468 0.77429 0.85484 1.20493 1.21480 1.20201 1.21151 0.90454 0.90995 1.01829 1.23655 0.94958 0.96622 0.96087 1.21432 1.02238 0.91606 1.02278 1.18855 1.00418 0.93357 0.91960 1.20015 0.98606 0.93905 0.94519 1.20936 1.02369 0.99424 0.94793 1.20777 1.02861 0.92770 0.98072 1.19851 1.00240 0.95755 0.93260 1.20756 1.01846 0.91836 1.02353 1.20752 1.02850 0.94461 0.96551 1.19953 0.99175 0.93066 0.95147 1.20777 1.01992 1.01353 0.92879 0.90109 0.95217 0.94480 0.94448 0.92949 0.94906 0.90929 0.99125 0.91697 0.93082 0.88285 0.95675 0.86936 0.86806 0.90885 0.92102 0.90549 0.86425 0.91477 0.91759 0.91803 0.86503 0.91350 0.91879 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.37 -7.31 7.80 -35.23 -0.27 -7.59 16 3 C 0.07 1.21 6.23 37.15 0.23 1.44 16 4 C 0.05 0.99 5.39 -3.83 -0.02 0.97 16 5 N -0.53 -11.36 4.44 -237.51 -1.06 -12.41 16 6 C 0.18 4.83 4.51 -4.97 -0.02 4.80 16 7 C -0.51 -14.33 8.21 -34.44 -0.28 -14.61 16 8 H 0.06 1.65 7.21 -52.49 -0.38 1.27 16 9 C 0.06 1.63 5.45 -17.82 -0.10 1.53 16 10 N -0.90 -27.00 13.28 55.43 0.74 -26.26 16 11 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.08 1.60 5.26 -4.98 -0.03 1.57 16 16 C -0.09 -1.48 6.26 -36.22 -0.23 -1.70 16 17 C -0.16 -2.20 7.08 -37.57 -0.27 -2.46 16 18 C -0.05 -0.62 5.64 -105.02 -0.59 -1.21 16 19 C -0.07 -0.90 5.84 -104.24 -0.61 -1.51 16 20 C -0.12 -1.41 8.44 36.00 0.30 -1.11 16 21 C -0.13 -1.47 9.34 -39.64 -0.37 -1.84 16 22 C -0.09 -0.99 5.89 -104.54 -0.62 -1.61 16 23 C -0.11 -0.88 10.01 36.01 0.36 -0.52 16 24 C -0.13 -1.43 9.34 -39.64 -0.37 -1.80 16 25 C -0.07 -0.90 5.91 -104.24 -0.62 -1.52 16 26 C -0.11 -1.18 9.62 36.00 0.35 -0.83 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.64 8.01 -51.93 -0.42 0.22 16 33 H 0.07 1.16 6.84 -51.93 -0.36 0.81 16 34 H -0.01 -0.27 8.11 -51.93 -0.42 -0.69 16 35 H 0.07 1.84 5.16 -51.93 -0.27 1.57 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.10 2.10 6.55 -51.93 -0.34 1.76 16 38 H 0.03 0.48 7.79 -51.93 -0.40 0.08 16 39 H 0.11 1.78 6.73 -52.49 -0.35 1.43 16 40 H 0.11 1.56 7.87 -52.49 -0.41 1.15 16 41 H 0.07 0.87 7.52 -51.93 -0.39 0.48 16 42 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 43 H 0.08 0.97 6.46 -51.93 -0.34 0.64 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 47 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 48 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 51 H 0.07 0.80 7.08 -51.93 -0.37 0.43 16 LS Contribution 404.87 15.07 6.10 6.10 Total: -1.00 -31.30 404.87 -10.34 -41.64 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -9.06 Total: 0.52 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -1.76 Total: -18.79 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: -0.32 Total: -38.67 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.27 Total: -7.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.30 -10.34 -41.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657303981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.050 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds