Wall clock time and date at job start Tue Mar 31 2020 12:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50706 * 109.46986 * 2 1 4 4 C 1.34515 * 125.78938 * 89.71266 * 3 2 1 5 5 C 1.41373 * 106.84221 * 179.88987 * 4 3 2 6 6 C 1.34511 * 106.84023 * 0.37278 * 5 4 3 7 7 C 1.50707 * 125.79061 * 179.79267 * 6 5 4 8 8 H 1.09001 * 109.46109 * 346.53211 * 7 6 5 9 9 C 1.53035 * 109.46174 * 106.51237 * 7 6 5 10 10 C 1.53117 * 109.28066 * 60.83417 * 9 7 6 11 11 H 1.08994 * 109.52238 * 297.75319 * 10 9 7 12 12 C 1.52998 * 109.52220 * 177.55729 * 10 9 7 13 13 C 1.53116 * 109.15596 * 57.65566 * 10 9 7 14 14 C 1.53039 * 109.28232 * 302.34389 * 13 10 9 15 15 N 1.46824 * 109.51270 * 59.18080 * 14 13 10 16 16 C 1.46902 * 110.98144 * 174.16137 * 15 14 13 17 17 C 1.53002 * 109.47057 * 287.30821 * 16 15 14 18 18 C 1.50708 * 115.55057 * 305.66105 * 17 16 15 19 19 H 1.07998 * 119.99913 * 144.40196 * 18 17 16 20 20 C 1.37874 * 119.99789 * 324.41185 * 18 17 16 21 21 N 1.31513 * 120.00056 * 350.57747 * 20 18 17 22 22 Si 1.86800 * 119.99900 * 170.58092 * 20 18 17 23 23 H 1.48497 * 109.47272 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47242 * 119.99890 * 22 20 18 25 25 H 1.48503 * 109.47050 * 239.99747 * 22 20 18 26 26 C 1.52995 * 117.50058 * 159.98993 * 17 16 15 27 27 C 1.53001 * 117.49853 * 91.32547 * 17 16 15 28 28 O 1.34294 * 125.78997 * 270.02323 * 3 2 1 29 29 H 1.09005 * 109.47055 * 60.00042 * 1 2 3 30 30 H 1.08996 * 109.47943 * 300.00067 * 1 2 3 31 31 H 1.09006 * 109.47260 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47012 * 119.99334 * 2 1 3 33 33 H 1.08996 * 109.47943 * 239.99933 * 2 1 3 34 34 H 1.08008 * 126.57752 * 0.02596 * 4 3 2 35 35 H 1.08010 * 126.58171 * 180.12017 * 5 4 3 36 36 H 1.09003 * 109.50235 * 180.78170 * 9 7 6 37 37 H 1.09004 * 109.50004 * 300.85622 * 9 7 6 38 38 H 1.09006 * 109.46990 * 60.00198 * 12 10 9 39 39 H 1.08995 * 109.47298 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47259 * 300.00378 * 12 10 9 41 41 H 1.09002 * 109.50710 * 62.28586 * 13 10 9 42 42 H 1.09002 * 109.50128 * 182.36367 * 13 10 9 43 43 H 1.08994 * 109.46388 * 179.20052 * 14 13 10 44 44 H 1.09002 * 109.45738 * 299.17706 * 14 13 10 45 45 H 1.08995 * 109.47626 * 47.30629 * 16 15 14 46 46 H 1.09000 * 109.47497 * 167.30991 * 16 15 14 47 47 H 0.96996 * 119.99900 * 185.03202 * 21 20 18 48 48 H 1.08998 * 117.50095 * 0.02562 * 26 17 16 49 49 H 1.09007 * 117.49769 * 145.02521 * 26 17 16 50 50 H 1.08999 * 117.49788 * 214.97741 * 27 17 16 51 51 H 1.09000 * 117.49990 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2893 2.1644 1.0911 5 6 2.7396 3.4234 0.6321 6 6 2.7229 3.3769 -0.7121 7 6 3.1193 4.4981 -1.6378 8 1 3.1939 5.4269 -1.0721 9 6 4.4736 4.1788 -2.2748 10 6 4.3588 2.8845 -3.0848 11 1 4.1030 2.0600 -2.4195 12 6 5.6933 2.5924 -3.7737 13 6 3.2626 3.0485 -4.1412 14 6 1.9433 3.4006 -3.4502 15 7 2.1052 4.6459 -2.6895 16 6 0.8228 5.0885 -2.1258 17 6 -0.0666 5.6312 -3.2462 18 6 0.5445 6.7183 -4.0924 19 1 0.3246 6.7685 -5.1485 20 6 1.3845 7.6487 -3.5181 21 7 1.5080 7.7043 -2.2100 22 14 2.3471 8.8303 -4.5982 23 1 2.0343 8.5635 -6.0251 24 1 1.9713 10.2269 -4.2614 25 1 3.8015 8.6396 -4.3667 26 6 -1.5716 5.7046 -2.9807 27 6 -1.0132 4.6470 -3.9363 28 8 2.2936 2.1615 -1.0893 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 0.5138 0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 2.1757 1.8575 2.1205 35 1 3.0359 4.2631 1.2435 36 1 4.7674 4.9958 -2.9339 37 1 5.2230 4.0544 -1.4931 38 1 6.4740 2.4815 -3.0212 39 1 5.6105 1.6712 -4.3504 40 1 5.9460 3.4167 -4.4406 41 1 3.5373 3.8477 -4.8297 42 1 3.1472 2.1160 -4.6936 43 1 1.1640 3.5320 -4.2007 44 1 1.6623 2.5948 -2.7720 45 1 0.3271 4.2454 -1.6447 46 1 1.0005 5.8733 -1.3906 47 1 2.0412 8.4046 -1.8025 48 1 -1.9281 5.3666 -2.0077 49 1 -2.1198 6.5390 -3.4184 50 1 -1.1943 4.7861 -5.0021 51 1 -1.0021 3.6127 -3.5924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657428039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:33 Heat of formation + Delta-G solvation = 22.851052 kcal Electronic energy + Delta-G solvation = -29280.804108 eV Core-core repulsion = 25760.708379 eV Total energy + Delta-G solvation = -3520.095730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.63231 -40.18103 -38.15629 -35.17627 -34.81538 -33.99921 -33.91245 -31.96728 -29.74189 -28.55592 -27.46855 -25.84238 -24.86896 -23.75799 -22.85822 -22.75592 -22.45575 -20.99073 -20.76745 -20.32795 -18.08374 -17.33061 -17.13284 -16.61857 -16.37321 -15.89424 -15.59424 -15.42645 -15.17613 -15.06791 -14.90445 -14.48105 -14.12513 -13.94016 -13.79874 -13.66324 -13.38690 -13.17440 -13.15733 -13.07080 -12.81970 -12.70334 -12.66944 -12.41875 -12.28701 -12.24005 -12.11056 -11.92734 -11.91143 -11.57092 -11.28102 -11.12931 -10.98677 -10.89550 -10.69405 -10.42620 -9.88926 -9.18012 -8.78668 -7.87525 -5.95444 0.86439 1.45323 1.50446 1.58152 1.73823 2.02394 2.53475 3.09500 3.36268 3.66380 3.76534 3.88903 3.96587 4.00147 4.07522 4.19603 4.23943 4.31082 4.36295 4.42224 4.52907 4.58600 4.60985 4.71572 4.76618 4.79756 4.82783 4.85528 4.88046 4.89962 4.92182 4.93299 4.95995 4.99925 5.06315 5.13313 5.17273 5.21312 5.25128 5.27350 5.33742 5.35685 5.40901 5.45896 5.53741 5.65700 5.70959 5.72252 6.07467 6.31313 6.46001 6.59720 6.70421 7.01832 7.65540 9.12614 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.012540 B = 0.005658 C = 0.004812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.312302 B = 4947.779705 C = 5817.052216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C -0.040 4.040 4 C -0.216 4.216 5 C -0.230 4.230 6 C -0.031 4.031 7 C 0.167 3.833 8 H 0.088 0.912 9 C -0.098 4.098 10 C -0.085 4.085 11 H 0.063 0.937 12 C -0.137 4.137 13 C -0.101 4.101 14 C 0.048 3.952 15 N -0.493 5.493 16 C 0.129 3.871 17 C 0.044 3.956 18 C -0.486 4.486 19 H 0.039 0.961 20 C 0.057 3.943 21 N -0.892 5.892 22 Si 0.938 3.062 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.281 1.281 26 C -0.210 4.210 27 C -0.195 4.195 28 O -0.168 6.168 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.163 0.837 35 H 0.146 0.854 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.041 0.959 45 H -0.024 1.024 46 H 0.088 0.912 47 H 0.256 0.744 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.074 0.926 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -14.949 4.557 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C -0.089 4.089 4 C -0.235 4.235 5 C -0.250 4.250 6 C -0.083 4.083 7 C 0.057 3.943 8 H 0.106 0.894 9 C -0.136 4.136 10 C -0.103 4.103 11 H 0.082 0.918 12 C -0.194 4.194 13 C -0.139 4.139 14 C -0.079 4.079 15 N -0.214 5.214 16 C 0.001 3.999 17 C 0.043 3.957 18 C -0.523 4.523 19 H 0.057 0.943 20 C -0.144 4.144 21 N -0.530 5.530 22 Si 0.766 3.234 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.207 1.207 26 C -0.248 4.248 27 C -0.232 4.232 28 O -0.065 6.065 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.180 0.820 35 H 0.164 0.836 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.058 0.942 45 H -0.006 1.006 46 H 0.106 0.894 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.093 0.907 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.751 -14.601 4.037 16.204 hybrid contribution -0.278 0.734 0.354 0.861 sum 5.473 -13.866 4.391 15.541 Atomic orbital electron populations 1.21767 0.93967 1.03201 1.01479 1.20192 0.96244 0.85843 1.05135 1.23274 1.04495 0.96521 0.84647 1.21709 1.07650 0.94019 1.00114 1.21812 1.08873 1.00233 0.94128 1.23896 1.02802 0.85918 0.95695 1.20612 0.93769 0.90875 0.89042 0.89431 1.21651 0.94186 0.98416 0.99352 1.21118 0.95961 0.96608 0.96644 0.91830 1.21741 0.95552 1.01731 1.00379 1.21557 0.93879 1.00916 0.97557 1.22369 0.98296 0.90000 0.97249 1.61690 1.07857 1.29228 1.22623 1.21321 0.87608 0.94932 0.96019 1.19053 0.86512 0.94737 0.95354 1.20420 1.27147 1.11412 0.93343 0.94314 1.25196 0.95800 0.97911 0.95494 1.69906 1.40728 1.32650 1.09726 0.85838 0.79290 0.78731 0.79520 1.20320 1.21403 1.20683 1.22960 1.02373 1.00868 0.98620 1.22860 1.09484 0.94000 0.96894 1.84251 1.65180 1.22396 1.34699 0.94504 0.92673 0.89287 0.86742 0.89721 0.81985 0.83647 0.91534 0.90644 0.92076 0.91748 0.92826 0.92532 0.90744 0.92101 0.94189 1.00605 0.89445 0.93428 0.91388 0.91041 0.90732 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.89 71.98 0.71 -2.10 16 2 C -0.04 -0.72 6.47 29.85 0.19 -0.53 16 3 C -0.04 -1.12 6.58 24.83 0.16 -0.96 16 4 C -0.22 -6.18 10.81 22.19 0.24 -5.94 16 5 C -0.23 -7.65 10.79 22.19 0.24 -7.41 16 6 C -0.03 -1.11 4.49 24.83 0.11 -0.99 16 7 C 0.17 6.39 2.78 44.19 0.12 6.51 16 8 H 0.09 3.70 7.93 -2.39 -0.02 3.68 16 9 C -0.10 -3.19 4.89 30.65 0.15 -3.04 16 10 C -0.08 -2.46 2.47 -10.72 -0.03 -2.49 16 11 H 0.06 1.92 6.21 -2.39 -0.01 1.91 16 12 C -0.14 -3.15 9.20 71.98 0.66 -2.49 16 13 C -0.10 -3.27 5.38 30.65 0.16 -3.11 16 14 C 0.05 1.86 4.95 86.33 0.43 2.29 16 15 N -0.49 -21.18 4.15 -875.56 -3.64 -24.82 16 16 C 0.13 6.17 3.54 86.30 0.31 6.48 16 17 C 0.04 2.21 1.61 -52.93 -0.09 2.12 16 18 C -0.49 -26.48 8.73 25.60 0.22 -26.25 16 19 H 0.04 2.17 7.83 -2.91 -0.02 2.15 16 20 C 0.06 3.05 5.19 84.65 0.44 3.49 16 21 N -0.89 -48.36 10.72 21.45 0.23 -48.13 16 22 Si 0.94 43.57 29.55 68.60 2.03 45.60 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 C -0.21 -9.80 9.96 30.62 0.30 -9.49 16 27 C -0.20 -8.64 8.38 30.62 0.26 -8.38 16 28 O -0.17 -5.71 5.92 -2.43 -0.01 -5.72 16 29 H 0.04 0.86 8.14 -2.38 -0.02 0.85 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 38 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 39 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 2.54 5.97 -2.39 -0.01 2.53 16 44 H 0.04 1.56 4.85 -2.39 -0.01 1.55 16 45 H -0.02 -1.17 7.70 -2.39 -0.02 -1.19 16 46 H 0.09 4.68 5.69 -2.39 -0.01 4.66 16 47 H 0.26 13.37 8.32 -92.71 -0.77 12.59 16 48 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 49 H 0.07 3.37 8.14 -2.38 -0.02 3.35 16 50 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 51 H 0.07 3.09 8.00 -2.39 -0.02 3.07 16 Total: -1.00 -59.17 388.52 4.09 -55.08 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 0.88 Total: 30.29 kcal Atomic # 6 Polarization: -56.91 SS G_CDS: 4.60 Total: -52.30 kcal Atomic # 7 Polarization: -69.54 SS G_CDS: -3.41 Total: -72.95 kcal Atomic # 8 Polarization: -5.71 SS G_CDS: -0.01 Total: -5.72 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -59.17 4.09 -55.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657428039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.933 kcal (2) G-P(sol) polarization free energy of solvation -59.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds