Wall clock time and date at job start Tue Mar 31 2020 12:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46999 * 2 1 4 4 C 1.34516 * 125.78502 * 90.00728 * 3 2 1 5 5 C 1.41385 * 106.83481 * 179.78869 * 4 3 2 6 6 C 1.34510 * 106.84573 * 0.36990 * 5 4 3 7 7 C 1.50699 * 125.79309 * 179.89143 * 6 5 4 8 8 H 1.09000 * 109.45801 * 339.69154 * 7 6 5 9 9 C 1.53040 * 109.45335 * 99.66412 * 7 6 5 10 10 C 1.53123 * 109.27541 * 179.19341 * 9 7 6 11 11 H 1.08996 * 109.52480 * 62.25128 * 10 9 7 12 12 C 1.52994 * 109.57273 * 182.41174 * 10 9 7 13 13 C 1.53120 * 109.15821 * 302.34476 * 10 9 7 14 14 C 1.53042 * 109.27846 * 57.65791 * 13 10 9 15 15 N 1.46839 * 109.52289 * 300.81636 * 14 13 10 16 16 C 1.46896 * 111.00117 * 185.83818 * 15 14 13 17 17 C 1.53001 * 109.47165 * 75.65997 * 16 15 14 18 18 C 1.50701 * 115.55203 * 270.09993 * 17 16 15 19 19 H 1.08001 * 119.99978 * 114.08711 * 18 17 16 20 20 C 1.37870 * 119.99972 * 294.09616 * 18 17 16 21 21 N 1.31518 * 119.99811 * 352.97495 * 20 18 17 22 22 Si 1.86800 * 120.00230 * 172.97453 * 20 18 17 23 23 H 1.48507 * 109.47018 * 60.00035 * 22 20 18 24 24 H 1.48500 * 109.47026 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47076 * 300.00156 * 22 20 18 26 26 C 1.53001 * 117.50139 * 124.38865 * 17 16 15 27 27 C 1.53002 * 117.49774 * 55.76583 * 17 16 15 28 28 O 1.34301 * 125.79074 * 270.01990 * 3 2 1 29 29 H 1.08999 * 109.46706 * 59.99662 * 1 2 3 30 30 H 1.08996 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46710 * 299.99856 * 1 2 3 32 32 H 1.09007 * 109.46926 * 239.99916 * 2 1 3 33 33 H 1.08998 * 109.47437 * 120.00472 * 2 1 3 34 34 H 1.07994 * 126.58103 * 359.97438 * 4 3 2 35 35 H 1.08005 * 126.57809 * 180.22852 * 5 4 3 36 36 H 1.08997 * 109.50016 * 59.24992 * 9 7 6 37 37 H 1.08998 * 109.50317 * 299.13035 * 9 7 6 38 38 H 1.09001 * 109.47210 * 179.83664 * 12 10 9 39 39 H 1.08998 * 109.47274 * 299.83983 * 12 10 9 40 40 H 1.09003 * 109.47806 * 59.83818 * 12 10 9 41 41 H 1.09000 * 109.50309 * 177.59872 * 13 10 9 42 42 H 1.08994 * 109.50460 * 297.67491 * 13 10 9 43 43 H 1.08993 * 109.45991 * 60.83626 * 14 13 10 44 44 H 1.09004 * 109.46080 * 180.80383 * 14 13 10 45 45 H 1.08998 * 109.47644 * 195.65809 * 16 15 14 46 46 H 1.08994 * 109.47471 * 315.66295 * 16 15 14 47 47 H 0.97007 * 120.00111 * 185.23292 * 21 20 18 48 48 H 1.09007 * 117.49640 * 359.97438 * 26 17 16 49 49 H 1.08999 * 117.49935 * 145.02219 * 26 17 16 50 50 H 1.09001 * 117.49988 * 214.97940 * 27 17 16 51 51 H 1.08998 * 117.50129 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2947 2.1624 1.0912 5 6 2.7450 3.4215 0.6321 6 6 2.7232 3.3768 -0.7121 7 6 3.1195 4.4980 -1.6378 8 1 3.0812 5.4446 -1.0987 9 6 4.5424 4.2589 -2.1479 10 6 4.9335 5.3897 -3.1035 11 1 4.9291 6.3382 -2.5666 12 6 6.3323 5.1260 -3.6643 13 6 3.9238 5.4477 -4.2532 14 6 2.5189 5.6523 -3.6820 15 7 2.1917 4.5447 -2.7751 16 6 0.7995 4.6344 -2.3153 17 6 -0.1385 4.1907 -3.4397 18 6 -0.6013 5.2828 -4.3692 19 1 -0.2971 5.2750 -5.4054 20 6 -1.4129 6.2922 -3.8966 21 7 -1.8959 6.2301 -2.6749 22 14 -1.8266 7.7481 -4.9916 23 1 -2.5247 7.2676 -6.2111 24 1 -2.7094 8.6871 -4.2540 25 1 -0.5751 8.4463 -5.3803 26 6 -1.1215 3.0587 -3.1342 27 6 0.0851 2.8008 -4.0389 28 8 2.2938 2.1615 -1.0894 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.1854 1.8540 2.1204 35 1 3.0464 4.2593 1.2434 36 1 4.5846 3.3059 -2.6751 37 1 5.2329 4.2400 -1.3047 38 1 6.6078 5.9303 -4.3465 39 1 7.0500 5.0826 -2.8451 40 1 6.3359 4.1773 -4.2010 41 1 4.1724 6.2779 -4.9143 42 1 3.9569 4.5136 -4.8140 43 1 2.4834 6.5935 -3.1335 44 1 1.7958 5.6797 -4.4973 45 1 0.6603 3.9872 -1.4494 46 1 0.5736 5.6643 -2.0391 47 1 -2.5269 6.9000 -2.3682 48 1 -1.0997 2.6298 -2.1323 49 1 -2.1034 3.1039 -3.6055 50 1 -0.1030 2.6762 -5.1054 51 1 0.9007 2.2027 -3.6325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657428040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:37 Heat of formation + Delta-G solvation = 22.246387 kcal Electronic energy + Delta-G solvation = -28757.294792 eV Core-core repulsion = 25237.172842 eV Total energy + Delta-G solvation = -3520.121950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.27619 -38.84372 -36.35122 -34.17174 -33.55143 -32.58496 -31.94309 -31.00972 -28.32565 -27.43057 -25.68375 -24.31495 -23.82837 -22.38601 -21.40347 -21.17255 -20.81268 -19.65659 -19.22303 -18.76266 -16.36222 -15.99496 -15.81242 -14.99685 -14.65634 -14.53427 -14.48864 -14.20985 -13.98267 -13.77834 -13.38282 -13.08638 -12.88544 -12.61839 -12.51025 -12.40624 -12.24481 -11.88649 -11.78953 -11.61319 -11.42500 -11.32536 -11.07093 -10.93441 -10.87680 -10.87052 -10.79623 -10.41623 -10.32958 -10.16146 -9.95614 -9.82243 -9.50148 -9.27686 -8.71352 -8.39930 -8.02476 -7.85385 -7.44708 -5.99430 -4.03109 2.09498 2.92384 3.26172 3.29778 3.35430 3.37722 4.41402 4.46352 4.76491 4.99238 5.06045 5.08496 5.16023 5.25049 5.32353 5.34671 5.39042 5.55602 5.58834 5.61313 5.69996 5.74813 5.84925 5.85762 5.88808 5.94845 5.99911 6.01138 6.13219 6.18360 6.27126 6.31033 6.31203 6.32493 6.38658 6.45497 6.51986 6.58929 6.70972 6.75610 6.83038 6.87461 7.01621 7.02944 7.11392 7.24568 7.55021 7.59185 7.64640 7.88394 8.02312 8.06121 8.55393 8.97095 9.59029 11.08186 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.006023 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.910026 B = 4647.559432 C = 6607.990604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.039 4.039 3 C -0.019 4.019 4 C -0.212 4.212 5 C -0.224 4.224 6 C 0.024 3.976 7 C 0.159 3.841 8 H 0.059 0.941 9 C -0.100 4.100 10 C -0.093 4.093 11 H 0.064 0.936 12 C -0.143 4.143 13 C -0.112 4.112 14 C 0.059 3.941 15 N -0.520 5.520 16 C 0.107 3.893 17 C 0.061 3.939 18 C -0.490 4.490 19 H 0.058 0.942 20 C 0.071 3.929 21 N -0.879 5.879 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.276 1.276 26 C -0.177 4.177 27 C -0.187 4.187 28 O -0.148 6.148 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.105 0.895 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.260 0.740 48 H 0.056 0.944 49 H 0.073 0.927 50 H 0.066 0.934 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.987 -6.585 4.965 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 C -0.070 4.070 4 C -0.231 4.231 5 C -0.244 4.244 6 C -0.027 4.027 7 C 0.050 3.950 8 H 0.077 0.923 9 C -0.137 4.137 10 C -0.112 4.112 11 H 0.083 0.917 12 C -0.200 4.200 13 C -0.150 4.150 14 C -0.069 4.069 15 N -0.245 5.245 16 C -0.020 4.020 17 C 0.060 3.940 18 C -0.527 4.527 19 H 0.076 0.924 20 C -0.132 4.132 21 N -0.516 5.516 22 Si 0.711 3.289 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.201 1.201 26 C -0.215 4.215 27 C -0.225 4.225 28 O -0.043 6.043 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.123 0.877 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.092 0.908 50 H 0.085 0.915 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.927 -6.962 4.562 14.544 hybrid contribution -0.562 1.722 0.342 1.843 sum 11.365 -5.240 4.904 13.441 Atomic orbital electron populations 1.21802 0.93905 1.01924 1.03243 1.20006 0.96466 0.87793 1.03361 1.22385 1.04666 0.95328 0.84602 1.21386 1.08170 0.94652 0.98920 1.21440 1.09654 0.99446 0.93822 1.22260 1.01257 0.85610 0.93591 1.20200 0.93652 0.90990 0.90164 0.92328 1.21658 0.93802 0.99671 0.98613 1.21185 0.94970 0.98253 0.96778 0.91723 1.21788 0.96133 1.01572 1.00508 1.21710 0.94418 1.01944 0.96932 1.22172 0.96455 0.90608 0.97646 1.62035 1.03133 1.44863 1.14475 1.21643 0.84407 0.99823 0.96123 1.18642 0.94057 0.86618 0.94680 1.20477 1.30665 1.06550 0.95056 0.92398 1.24969 0.95820 0.97681 0.94745 1.69982 1.29761 1.35298 1.16525 0.86805 0.78391 0.82946 0.80772 1.20299 1.21403 1.20139 1.22690 0.94202 1.07167 0.97434 1.22671 0.99341 1.03477 0.96979 1.84087 1.64197 1.21947 1.34063 0.91553 0.92027 0.92367 0.90352 0.89552 0.84219 0.84180 0.90853 0.92032 0.92871 0.93164 0.92665 0.92156 0.91242 0.95951 0.87706 0.93759 0.93538 0.93056 0.92520 0.90834 0.91504 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.90 37.16 0.37 -1.47 16 2 C -0.04 -0.47 6.47 -27.88 -0.18 -0.65 16 3 C -0.02 -0.30 6.57 -35.62 -0.23 -0.53 16 4 C -0.21 -3.18 10.81 -39.70 -0.43 -3.61 16 5 C -0.22 -3.59 10.80 -39.70 -0.43 -4.02 16 6 C 0.02 0.42 4.26 -35.63 -0.15 0.27 16 7 C 0.16 2.70 2.30 -68.87 -0.16 2.54 16 8 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 9 C -0.10 -1.41 4.64 -26.65 -0.12 -1.54 16 10 C -0.09 -1.22 2.79 -90.50 -0.25 -1.47 16 11 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 12 C -0.14 -1.54 9.20 37.15 0.34 -1.20 16 13 C -0.11 -1.68 5.38 -26.65 -0.14 -1.82 16 14 C 0.06 1.10 5.24 -3.84 -0.02 1.08 16 15 N -0.52 -10.20 4.21 -228.09 -0.96 -11.16 16 16 C 0.11 2.47 4.71 -3.83 -0.02 2.46 16 17 C 0.06 1.50 1.22 -155.66 -0.19 1.31 16 18 C -0.49 -13.03 7.03 -34.44 -0.24 -13.27 16 19 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 20 C 0.07 1.91 5.21 -17.82 -0.09 1.82 16 21 N -0.88 -24.77 12.71 55.43 0.70 -24.07 16 22 Si 0.88 20.84 29.55 -169.99 -5.02 15.82 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.18 -4.28 9.88 -26.73 -0.26 -4.54 16 27 C -0.19 -4.27 9.74 -26.73 -0.26 -4.53 16 28 O -0.15 -2.71 10.31 5.70 0.06 -2.65 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 2.25 6.04 -51.93 -0.31 1.94 16 45 H 0.04 1.06 5.80 -51.93 -0.30 0.76 16 46 H 0.05 1.21 7.22 -51.93 -0.37 0.84 16 47 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 48 H 0.06 1.34 8.03 -51.92 -0.42 0.92 16 49 H 0.07 1.86 8.14 -51.93 -0.42 1.43 16 50 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 51 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -28.45 400.14 -11.08 -39.53 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -9.41 Total: 5.66 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: -2.48 Total: -29.16 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.26 Total: -35.23 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: 0.06 Total: -2.65 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.45 -11.08 -39.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657428040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.776 kcal (2) G-P(sol) polarization free energy of solvation -28.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds