Wall clock time and date at job start Tue Mar 31 2020 12:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50691 * 109.47446 * 2 1 4 4 C 1.34520 * 125.78960 * 90.00104 * 3 2 1 5 5 C 1.41384 * 106.83843 * 180.02562 * 4 3 2 6 6 C 1.34511 * 106.84235 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.78776 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46039 * 11.47145 * 7 6 5 9 9 C 1.53038 * 109.45247 * 251.49785 * 7 6 5 10 10 C 1.53114 * 109.27746 * 299.16776 * 9 7 6 11 11 H 1.09004 * 109.52339 * 62.25217 * 10 9 7 12 12 C 1.52999 * 109.52383 * 182.44212 * 10 9 7 13 13 C 1.53118 * 109.16147 * 302.34764 * 10 9 7 14 14 C 1.53032 * 109.28082 * 57.65728 * 13 10 9 15 15 N 1.46847 * 109.46376 * 131.44921 * 7 6 5 16 16 C 1.46907 * 110.99933 * 294.16958 * 15 7 6 17 17 C 1.52998 * 109.46891 * 175.53359 * 16 15 7 18 18 C 1.50700 * 115.55407 * 54.63574 * 17 16 15 19 19 H 1.08001 * 120.00061 * 248.89088 * 18 17 16 20 20 C 1.37874 * 120.00044 * 68.88004 * 18 17 16 21 21 N 1.31513 * 120.00097 * 8.27002 * 20 18 17 22 22 Si 1.86803 * 120.00088 * 188.26491 * 20 18 17 23 23 H 1.48500 * 109.47171 * 184.99808 * 22 20 18 24 24 H 1.48501 * 109.46922 * 305.00043 * 22 20 18 25 25 H 1.48499 * 109.46957 * 65.00012 * 22 20 18 26 26 C 1.52997 * 117.51684 * 200.33581 * 17 16 15 27 27 C 1.52997 * 60.00342 * 107.48023 * 26 17 16 28 28 O 1.34295 * 108.42253 * 0.25772 * 6 5 4 29 29 H 1.08996 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46932 * 300.00205 * 1 2 3 31 31 H 1.08997 * 109.47159 * 59.99426 * 1 2 3 32 32 H 1.09004 * 109.46579 * 239.99759 * 2 1 3 33 33 H 1.09003 * 109.46765 * 120.00676 * 2 1 3 34 34 H 1.07998 * 126.57602 * 0.05200 * 4 3 2 35 35 H 1.08001 * 126.57642 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.50196 * 59.11385 * 9 7 6 37 37 H 1.08995 * 109.50032 * 179.22769 * 9 7 6 38 38 H 1.09003 * 109.47120 * 59.99651 * 12 10 9 39 39 H 1.09000 * 109.47753 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.46742 * 300.00439 * 12 10 9 41 41 H 1.09004 * 109.50188 * 177.60118 * 13 10 9 42 42 H 1.09001 * 109.50444 * 297.67175 * 13 10 9 43 43 H 1.09000 * 109.46327 * 180.80657 * 14 13 10 44 44 H 1.08997 * 109.46556 * 60.83584 * 14 13 10 45 45 H 1.09000 * 109.47409 * 55.53210 * 16 15 7 46 46 H 1.08999 * 109.46669 * 295.53133 * 16 15 7 47 47 H 0.97008 * 119.99940 * 357.49546 * 21 20 18 48 48 H 1.09000 * 117.50176 * 214.96675 * 26 17 16 49 49 H 1.09007 * 117.50209 * 359.97438 * 26 17 16 50 50 H 1.09000 * 117.50113 * 252.51714 * 27 26 17 51 51 H 1.09004 * 117.50029 * 107.48627 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2947 2.1624 1.0912 5 6 2.7399 3.4233 0.6320 6 6 2.7226 3.3769 -0.7122 7 6 3.1187 4.4982 -1.6379 8 1 3.6137 5.2833 -1.0662 9 6 1.8685 5.0689 -2.3113 10 6 1.1877 3.9679 -3.1291 11 1 0.8687 3.1650 -2.4645 12 6 -0.0288 4.5474 -3.8538 13 6 2.1810 3.4177 -4.1563 14 6 3.4220 2.8948 -3.4294 15 7 4.0374 3.9856 -2.6624 16 6 5.3078 3.5559 -2.0627 17 6 6.1934 2.9271 -3.1403 18 6 6.4484 3.7838 -4.3536 19 1 6.0214 3.5103 -5.3072 20 6 7.2267 4.9168 -4.2463 21 7 7.8784 5.1637 -3.1311 22 14 7.3554 6.1013 -5.6851 23 1 8.3392 7.1660 -5.3632 24 1 7.8016 5.3642 -6.8946 25 1 6.0277 6.7151 -5.9412 26 6 7.3223 2.0040 -2.6775 27 6 6.0819 1.4161 -3.3532 28 8 2.2875 2.1637 -1.0894 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 2.1864 1.8536 2.1204 35 1 3.0370 4.2626 1.2433 36 1 1.1801 5.4352 -1.5498 37 1 2.1527 5.8890 -2.9706 38 1 0.2924 5.3482 -4.5198 39 1 -0.5132 3.7629 -4.4353 40 1 -0.7327 4.9439 -3.1220 41 1 1.7156 2.6043 -4.7130 42 1 2.4695 4.2116 -4.8451 43 1 4.1374 2.5154 -4.1590 44 1 3.1343 2.0914 -2.7513 45 1 5.1109 2.8226 -1.2807 46 1 5.8164 4.4186 -1.6322 47 1 7.7830 4.5679 -2.3715 48 1 8.2494 2.0163 -3.2505 49 1 7.4346 1.8448 -1.6049 50 1 5.3779 0.8700 -2.7253 51 1 6.1930 1.0416 -4.3709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657428041.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:40 Heat of formation + Delta-G solvation = 25.688264 kcal Electronic energy + Delta-G solvation = -29121.673423 eV Core-core repulsion = 25601.700724 eV Total energy + Delta-G solvation = -3519.972699 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.53138 -38.95761 -36.72221 -34.23881 -33.68335 -32.75772 -31.81387 -30.78344 -28.56598 -27.54358 -25.12406 -24.39541 -23.89940 -22.56801 -21.67715 -21.32299 -21.11940 -19.91857 -19.18173 -19.11144 -16.56193 -16.27103 -15.95531 -15.27461 -14.86182 -14.53006 -14.16280 -14.02828 -13.74518 -13.65672 -13.60436 -13.13928 -13.04326 -12.87483 -12.55636 -12.47418 -12.29988 -12.25679 -11.95487 -11.68798 -11.61886 -11.53799 -11.20911 -11.09810 -10.94271 -10.72098 -10.63644 -10.40176 -10.24878 -10.04466 -9.95654 -9.90123 -9.59705 -9.28592 -8.62890 -8.37555 -8.09450 -8.01053 -7.49331 -6.20951 -3.89904 1.95433 2.82381 3.08877 3.51037 3.54869 3.71318 4.49640 4.62935 4.70028 4.85765 4.99452 5.08818 5.10394 5.14394 5.17605 5.20940 5.28310 5.39552 5.49710 5.57975 5.63326 5.69668 5.74339 5.80419 5.91059 5.92800 5.95692 5.97836 5.98687 6.05914 6.08331 6.14086 6.20480 6.25070 6.30158 6.35171 6.41448 6.45066 6.47204 6.55391 6.58704 6.65355 6.74935 6.87258 6.92903 6.98995 7.27608 7.30119 7.44103 7.85741 7.93963 8.39782 8.54586 9.00826 9.80892 11.18267 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.005047 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.960842 B = 5546.870815 C = 6382.639483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.033 4.033 4 C -0.208 4.208 5 C -0.221 4.221 6 C -0.015 4.015 7 C 0.157 3.843 8 H 0.104 0.896 9 C -0.102 4.102 10 C -0.094 4.094 11 H 0.068 0.932 12 C -0.143 4.143 13 C -0.108 4.108 14 C 0.050 3.950 15 N -0.491 5.491 16 C 0.100 3.900 17 C 0.036 3.964 18 C -0.545 4.545 19 H 0.048 0.952 20 C 0.032 3.968 21 N -0.909 5.909 22 Si 1.064 2.936 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.287 1.287 26 C -0.190 4.190 27 C -0.199 4.199 28 O -0.153 6.153 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.041 0.959 45 H 0.004 0.996 46 H 0.072 0.928 47 H 0.271 0.729 48 H 0.082 0.918 49 H 0.061 0.939 50 H 0.062 0.938 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.363 -5.640 5.547 17.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.083 4.083 4 C -0.228 4.228 5 C -0.241 4.241 6 C -0.068 4.068 7 C 0.047 3.953 8 H 0.122 0.878 9 C -0.140 4.140 10 C -0.113 4.113 11 H 0.086 0.914 12 C -0.200 4.200 13 C -0.146 4.146 14 C -0.077 4.077 15 N -0.212 5.212 16 C -0.027 4.027 17 C 0.035 3.965 18 C -0.583 4.583 19 H 0.066 0.934 20 C -0.173 4.173 21 N -0.545 5.545 22 Si 0.893 3.107 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.213 1.213 26 C -0.229 4.229 27 C -0.236 4.236 28 O -0.050 6.050 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.157 0.843 35 H 0.159 0.841 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.080 0.920 50 H 0.081 0.919 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.549 -3.925 4.385 15.695 hybrid contribution -0.775 -2.109 1.565 2.738 sum -15.325 -6.034 5.949 17.512 Atomic orbital electron populations 1.21766 0.94231 1.01932 1.02521 1.20003 0.96090 0.88080 1.03691 1.22486 1.05284 0.95350 0.85193 1.21421 1.07790 0.94692 0.98848 1.21557 1.09078 0.99314 0.94117 1.23979 1.01217 0.86190 0.95404 1.20805 0.93781 0.91121 0.89570 0.87834 1.21663 0.94828 0.98512 0.98991 1.21222 0.95085 0.97675 0.97279 0.91375 1.21797 0.97448 1.00723 1.00054 1.21616 0.94974 1.00421 0.97567 1.22393 0.95704 0.91919 0.97731 1.61921 1.02435 1.35316 1.21531 1.21678 0.88797 0.97966 0.94258 1.19090 0.94191 0.87165 0.96022 1.21038 1.34522 1.09849 0.92878 0.93359 1.25569 0.92608 0.97194 1.01933 1.70753 1.38606 1.40980 1.04129 0.83621 0.76297 0.76167 0.74601 1.21181 1.21903 1.21347 1.22906 0.93913 1.08605 0.97434 1.22843 1.01160 0.99676 0.99939 1.84308 1.64612 1.22412 1.33623 0.91929 0.92379 0.92314 0.90348 0.89436 0.84324 0.84071 0.92000 0.90041 0.92584 0.93099 0.93309 0.92594 0.91115 0.88768 0.94173 0.97826 0.90974 0.91747 0.89952 0.92031 0.91931 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.90 37.16 0.37 -0.97 16 2 C -0.04 -0.44 6.47 -27.89 -0.18 -0.62 16 3 C -0.03 -0.47 6.58 -35.63 -0.23 -0.71 16 4 C -0.21 -2.97 10.81 -39.70 -0.43 -3.40 16 5 C -0.22 -3.42 10.79 -39.70 -0.43 -3.85 16 6 C -0.02 -0.26 4.14 -35.62 -0.15 -0.40 16 7 C 0.16 2.69 2.81 -68.87 -0.19 2.50 16 8 H 0.10 1.76 8.09 -51.93 -0.42 1.34 16 9 C -0.10 -1.51 4.89 -26.65 -0.13 -1.64 16 10 C -0.09 -1.34 2.47 -90.50 -0.22 -1.57 16 11 H 0.07 1.03 6.12 -51.93 -0.32 0.72 16 12 C -0.14 -1.70 9.20 37.16 0.34 -1.36 16 13 C -0.11 -1.74 5.38 -26.65 -0.14 -1.89 16 14 C 0.05 0.94 4.40 -3.83 -0.02 0.92 16 15 N -0.49 -9.91 4.41 -228.07 -1.01 -10.91 16 16 C 0.10 2.26 4.74 -3.82 -0.02 2.24 16 17 C 0.04 0.87 0.11 -155.66 -0.02 0.85 16 18 C -0.55 -14.65 7.95 -34.44 -0.27 -14.93 16 19 H 0.05 1.33 7.83 -52.49 -0.41 0.92 16 20 C 0.03 0.88 5.42 -17.82 -0.10 0.79 16 21 N -0.91 -26.54 13.51 55.43 0.75 -25.79 16 22 Si 1.06 25.14 29.91 -169.99 -5.08 20.06 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 26 C -0.19 -4.43 9.27 -26.73 -0.25 -4.68 16 27 C -0.20 -4.35 8.12 -26.73 -0.22 -4.57 16 28 O -0.15 -2.53 5.86 5.72 0.03 -2.50 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 2.01 5.25 -51.93 -0.27 1.74 16 44 H 0.04 0.77 4.91 -51.93 -0.26 0.52 16 45 H 0.00 0.08 7.09 -51.93 -0.37 -0.29 16 46 H 0.07 1.78 7.16 -51.93 -0.37 1.41 16 47 H 0.27 7.89 5.96 -40.82 -0.24 7.65 16 48 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 49 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 50 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 51 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -29.26 387.25 -10.83 -40.08 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -9.07 Total: 6.50 kcal Atomic # 6 Polarization: -30.99 SS G_CDS: -2.29 Total: -33.27 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.26 Total: -36.70 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: 0.03 Total: -2.50 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.26 -10.83 -40.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657428041.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.771 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds