Wall clock time and date at job start Tue Mar 31 2020 12:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50691 * 109.47446 * 2 1 4 4 C 1.34520 * 125.78960 * 90.00104 * 3 2 1 5 5 C 1.41384 * 106.83843 * 180.02562 * 4 3 2 6 6 C 1.34511 * 106.84235 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.78776 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.46039 * 11.47145 * 7 6 5 9 9 C 1.53038 * 109.45247 * 251.49785 * 7 6 5 10 10 C 1.53114 * 109.27746 * 299.16776 * 9 7 6 11 11 H 1.09004 * 109.52339 * 62.25217 * 10 9 7 12 12 C 1.52999 * 109.52383 * 182.44212 * 10 9 7 13 13 C 1.53118 * 109.16147 * 302.34764 * 10 9 7 14 14 C 1.53032 * 109.28082 * 57.65728 * 13 10 9 15 15 N 1.46847 * 109.46376 * 131.44921 * 7 6 5 16 16 C 1.46907 * 110.99933 * 294.16958 * 15 7 6 17 17 C 1.52998 * 109.46891 * 175.53359 * 16 15 7 18 18 C 1.50700 * 115.55407 * 54.63574 * 17 16 15 19 19 H 1.08001 * 120.00061 * 248.89088 * 18 17 16 20 20 C 1.37874 * 120.00044 * 68.88004 * 18 17 16 21 21 N 1.31513 * 120.00097 * 8.27002 * 20 18 17 22 22 Si 1.86803 * 120.00088 * 188.26491 * 20 18 17 23 23 H 1.48500 * 109.47171 * 184.99808 * 22 20 18 24 24 H 1.48501 * 109.46922 * 305.00043 * 22 20 18 25 25 H 1.48499 * 109.46957 * 65.00012 * 22 20 18 26 26 C 1.52997 * 117.51684 * 200.33581 * 17 16 15 27 27 C 1.52997 * 60.00342 * 107.48023 * 26 17 16 28 28 O 1.34295 * 108.42253 * 0.25772 * 6 5 4 29 29 H 1.08996 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46932 * 300.00205 * 1 2 3 31 31 H 1.08997 * 109.47159 * 59.99426 * 1 2 3 32 32 H 1.09004 * 109.46579 * 239.99759 * 2 1 3 33 33 H 1.09003 * 109.46765 * 120.00676 * 2 1 3 34 34 H 1.07998 * 126.57602 * 0.05200 * 4 3 2 35 35 H 1.08001 * 126.57642 * 180.02562 * 5 4 3 36 36 H 1.08998 * 109.50196 * 59.11385 * 9 7 6 37 37 H 1.08995 * 109.50032 * 179.22769 * 9 7 6 38 38 H 1.09003 * 109.47120 * 59.99651 * 12 10 9 39 39 H 1.09000 * 109.47753 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.46742 * 300.00439 * 12 10 9 41 41 H 1.09004 * 109.50188 * 177.60118 * 13 10 9 42 42 H 1.09001 * 109.50444 * 297.67175 * 13 10 9 43 43 H 1.09000 * 109.46327 * 180.80657 * 14 13 10 44 44 H 1.08997 * 109.46556 * 60.83584 * 14 13 10 45 45 H 1.09000 * 109.47409 * 55.53210 * 16 15 7 46 46 H 1.08999 * 109.46669 * 295.53133 * 16 15 7 47 47 H 0.97008 * 119.99940 * 357.49546 * 21 20 18 48 48 H 1.09000 * 117.50176 * 214.96675 * 26 17 16 49 49 H 1.09007 * 117.50209 * 359.97438 * 26 17 16 50 50 H 1.09000 * 117.50113 * 252.51714 * 27 26 17 51 51 H 1.09004 * 117.50029 * 107.48627 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2947 2.1624 1.0912 5 6 2.7399 3.4233 0.6320 6 6 2.7226 3.3769 -0.7122 7 6 3.1187 4.4982 -1.6379 8 1 3.6137 5.2833 -1.0662 9 6 1.8685 5.0689 -2.3113 10 6 1.1877 3.9679 -3.1291 11 1 0.8687 3.1650 -2.4645 12 6 -0.0288 4.5474 -3.8538 13 6 2.1810 3.4177 -4.1563 14 6 3.4220 2.8948 -3.4294 15 7 4.0374 3.9856 -2.6624 16 6 5.3078 3.5559 -2.0627 17 6 6.1934 2.9271 -3.1403 18 6 6.4484 3.7838 -4.3536 19 1 6.0214 3.5103 -5.3072 20 6 7.2267 4.9168 -4.2463 21 7 7.8784 5.1637 -3.1311 22 14 7.3554 6.1013 -5.6851 23 1 8.3392 7.1660 -5.3632 24 1 7.8016 5.3642 -6.8946 25 1 6.0277 6.7151 -5.9412 26 6 7.3223 2.0040 -2.6775 27 6 6.0819 1.4161 -3.3532 28 8 2.2875 2.1637 -1.0894 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 2.1864 1.8536 2.1204 35 1 3.0370 4.2626 1.2433 36 1 1.1801 5.4352 -1.5498 37 1 2.1527 5.8890 -2.9706 38 1 0.2924 5.3482 -4.5198 39 1 -0.5132 3.7629 -4.4353 40 1 -0.7327 4.9439 -3.1220 41 1 1.7156 2.6043 -4.7130 42 1 2.4695 4.2116 -4.8451 43 1 4.1374 2.5154 -4.1590 44 1 3.1343 2.0914 -2.7513 45 1 5.1109 2.8226 -1.2807 46 1 5.8164 4.4186 -1.6322 47 1 7.7830 4.5679 -2.3715 48 1 8.2494 2.0163 -3.2505 49 1 7.4346 1.8448 -1.6049 50 1 5.3779 0.8700 -2.7253 51 1 6.1930 1.0416 -4.3709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657428041.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:39 Heat of formation + Delta-G solvation = 12.295826 kcal Electronic energy + Delta-G solvation = -29122.254163 eV Core-core repulsion = 25601.700724 eV Total energy + Delta-G solvation = -3520.553439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.71860 -40.43029 -38.43085 -35.27679 -34.91360 -34.01457 -33.87156 -32.04945 -29.92318 -28.62322 -27.06324 -26.04788 -24.93598 -23.94375 -22.95575 -22.83751 -22.54745 -21.10304 -21.04599 -20.39379 -18.51830 -17.50205 -17.13623 -16.78255 -16.15133 -15.71845 -15.59877 -15.49545 -15.25490 -15.16707 -14.97621 -14.55460 -14.37662 -14.02823 -13.98893 -13.79192 -13.69241 -13.35121 -13.22372 -13.05853 -12.85528 -12.70097 -12.55331 -12.45249 -12.41331 -12.28226 -12.15498 -11.94144 -11.91733 -11.58529 -11.37648 -11.23470 -10.98430 -10.75453 -10.64820 -10.28870 -10.09956 -9.25996 -9.02684 -8.40385 -6.08765 0.78857 1.58303 1.66306 1.67220 1.83549 1.94570 2.65830 2.97834 3.32500 3.43271 3.58223 3.80415 3.90025 3.96416 4.00124 4.08866 4.13430 4.20723 4.28165 4.33794 4.34824 4.46914 4.53797 4.54076 4.56799 4.64831 4.73541 4.75469 4.80052 4.83480 4.84830 4.88577 4.91872 4.92257 4.97278 5.01606 5.05246 5.12326 5.15339 5.23309 5.26951 5.31048 5.33552 5.37423 5.42036 5.44712 5.64197 5.64755 6.16545 6.22857 6.33898 6.40917 6.45025 6.83808 7.67697 8.99344 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.014210 B = 0.005047 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.960842 B = 5546.870815 C = 6382.639483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C -0.036 4.036 4 C -0.217 4.217 5 C -0.226 4.226 6 C -0.036 4.036 7 C 0.155 3.845 8 H 0.096 0.904 9 C -0.098 4.098 10 C -0.086 4.086 11 H 0.063 0.937 12 C -0.137 4.137 13 C -0.104 4.104 14 C 0.057 3.943 15 N -0.507 5.507 16 C 0.121 3.879 17 C 0.016 3.984 18 C -0.545 4.545 19 H 0.036 0.964 20 C -0.012 4.012 21 N -0.935 5.935 22 Si 1.104 2.896 23 H -0.290 1.290 24 H -0.278 1.278 25 H -0.276 1.276 26 C -0.194 4.194 27 C -0.172 4.172 28 O -0.168 6.168 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.041 0.959 45 H 0.001 0.999 46 H 0.042 0.958 47 H 0.261 0.739 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.669 -6.486 5.807 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.080 4.080 3 C -0.086 4.086 4 C -0.236 4.236 5 C -0.245 4.245 6 C -0.088 4.088 7 C 0.046 3.954 8 H 0.114 0.886 9 C -0.135 4.135 10 C -0.105 4.105 11 H 0.081 0.919 12 C -0.194 4.194 13 C -0.141 4.141 14 C -0.070 4.070 15 N -0.229 5.229 16 C -0.007 4.007 17 C 0.015 3.985 18 C -0.583 4.583 19 H 0.054 0.946 20 C -0.212 4.212 21 N -0.572 5.572 22 Si 0.929 3.071 23 H -0.216 1.216 24 H -0.204 1.204 25 H -0.201 1.201 26 C -0.232 4.232 27 C -0.210 4.210 28 O -0.065 6.065 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.126 0.874 34 H 0.180 0.820 35 H 0.169 0.831 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.019 0.981 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.096 0.904 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.875 -4.787 4.642 18.144 hybrid contribution -0.077 -1.932 1.539 2.471 sum -16.952 -6.719 6.181 19.254 Atomic orbital electron populations 1.21733 0.92796 1.03280 1.02084 1.20214 0.97238 0.85888 1.04612 1.23245 1.04172 0.96510 0.84638 1.21728 1.07706 0.94075 1.00099 1.21846 1.08414 1.00311 0.93978 1.23712 1.03019 0.86463 0.95562 1.20783 0.94097 0.91254 0.89303 0.88610 1.21664 0.94116 0.98389 0.99362 1.21138 0.95415 0.97278 0.96632 0.91877 1.21743 0.96457 1.00972 1.00264 1.21586 0.94333 1.00537 0.97694 1.22273 0.95994 0.91805 0.96969 1.61867 1.02447 1.35725 1.22821 1.21291 0.89646 0.96274 0.93474 1.19138 0.95212 0.88183 0.95980 1.21205 1.33592 1.10139 0.93322 0.94557 1.26699 0.92389 0.98821 1.03253 1.70854 1.40313 1.41386 1.04636 0.83085 0.76663 0.74648 0.72750 1.21601 1.20405 1.20125 1.22837 0.93481 1.08979 0.97944 1.22768 1.00061 0.98122 1.00004 1.84251 1.64977 1.22518 1.34755 0.89707 0.92088 0.93455 0.90506 0.87402 0.81969 0.83138 0.89998 0.90659 0.92552 0.92047 0.91898 0.91024 0.92377 0.91630 0.94179 0.98121 0.93964 0.92856 0.91678 0.90990 0.90389 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.90 71.98 0.71 -1.46 16 2 C -0.04 -0.80 6.47 29.85 0.19 -0.61 16 3 C -0.04 -0.96 6.58 24.83 0.16 -0.80 16 4 C -0.22 -5.78 10.81 22.19 0.24 -5.54 16 5 C -0.23 -6.78 10.79 22.19 0.24 -6.54 16 6 C -0.04 -1.16 4.14 24.83 0.10 -1.06 16 7 C 0.16 5.33 2.81 44.19 0.12 5.45 16 8 H 0.10 3.35 8.09 -2.39 -0.02 3.33 16 9 C -0.10 -2.79 4.89 30.65 0.15 -2.64 16 10 C -0.09 -2.32 2.47 -10.72 -0.03 -2.35 16 11 H 0.06 1.80 6.12 -2.38 -0.01 1.79 16 12 C -0.14 -2.91 9.20 71.98 0.66 -2.25 16 13 C -0.10 -3.26 5.38 30.64 0.16 -3.10 16 14 C 0.06 2.15 4.40 86.32 0.38 2.53 16 15 N -0.51 -20.80 4.41 -875.47 -3.86 -24.66 16 16 C 0.12 5.60 4.74 86.30 0.41 6.01 16 17 C 0.02 0.77 0.11 -52.93 -0.01 0.76 16 18 C -0.54 -29.85 7.95 25.60 0.20 -29.64 16 19 H 0.04 2.03 7.83 -2.91 -0.02 2.01 16 20 C -0.01 -0.68 5.42 84.65 0.46 -0.22 16 21 N -0.93 -55.95 13.51 21.45 0.29 -55.66 16 22 Si 1.10 51.10 29.91 68.60 2.05 53.15 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 C -0.19 -9.18 9.27 30.59 0.28 -8.89 16 27 C -0.17 -7.53 8.12 30.60 0.25 -7.28 16 28 O -0.17 -5.38 5.86 -2.46 -0.01 -5.40 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 35 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.07 2.83 5.25 -2.39 -0.01 2.82 16 44 H 0.04 1.53 4.91 -2.39 -0.01 1.52 16 45 H 0.00 0.04 7.09 -2.39 -0.02 0.02 16 46 H 0.04 2.18 7.16 -2.39 -0.02 2.16 16 47 H 0.26 15.74 5.96 -92.70 -0.55 15.19 16 48 H 0.06 3.27 8.14 -2.39 -0.02 3.25 16 49 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 50 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 51 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 Total: -1.00 -63.63 387.25 4.27 -59.37 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 1.10 Total: 30.82 kcal Atomic # 6 Polarization: -62.33 SS G_CDS: 4.70 Total: -57.63 kcal Atomic # 7 Polarization: -76.75 SS G_CDS: -3.57 Total: -80.32 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.01 Total: -5.40 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Total: -63.63 4.27 -59.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657428041.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.662 kcal (2) G-P(sol) polarization free energy of solvation -63.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds