Wall clock time and date at job start Tue Mar 31 2020 12:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47118 * 2 1 4 4 C 1.34515 * 125.78858 * 85.03407 * 3 2 1 5 5 C 1.41386 * 106.84123 * 179.88938 * 4 3 2 6 6 C 1.34508 * 106.83989 * 0.37304 * 5 4 3 7 7 C 1.50697 * 125.79083 * 179.75135 * 6 5 4 8 8 H 1.08999 * 109.45907 * 13.66617 * 7 6 5 9 9 C 1.53035 * 109.46309 * 253.68724 * 7 6 5 10 10 C 1.53124 * 109.27850 * 180.80579 * 9 7 6 11 11 H 1.08998 * 109.51870 * 297.74867 * 10 9 7 12 12 C 1.52991 * 109.52131 * 177.56091 * 10 9 7 13 13 C 1.53117 * 109.16157 * 57.65230 * 10 9 7 14 14 C 1.53036 * 109.27874 * 302.34758 * 13 10 9 15 15 N 1.46849 * 109.52444 * 59.18105 * 14 13 10 16 16 C 1.46902 * 111.00164 * 174.16265 * 15 14 13 17 17 C 1.53002 * 109.46988 * 299.41397 * 16 15 14 18 18 C 1.50705 * 115.54894 * 303.87482 * 17 16 15 19 19 H 1.07997 * 119.99916 * 145.10705 * 18 17 16 20 20 C 1.37873 * 119.99930 * 325.11119 * 18 17 16 21 21 N 1.31519 * 119.99945 * 341.25841 * 20 18 17 22 22 Si 1.86794 * 120.00225 * 161.26443 * 20 18 17 23 23 H 1.48497 * 109.47217 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47330 * 119.99844 * 22 20 18 25 25 H 1.48502 * 109.47240 * 239.99967 * 22 20 18 26 26 C 1.53000 * 117.50027 * 158.20540 * 17 16 15 27 27 C 1.53000 * 117.49778 * 89.54102 * 17 16 15 28 28 O 1.34299 * 125.79110 * 265.33762 * 3 2 1 29 29 H 1.09000 * 109.46825 * 59.99808 * 1 2 3 30 30 H 1.09002 * 109.47155 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47181 * 300.00128 * 1 2 3 32 32 H 1.09002 * 109.47283 * 119.99947 * 2 1 3 33 33 H 1.09001 * 109.47189 * 239.99880 * 2 1 3 34 34 H 1.08000 * 126.57731 * 0.02562 * 4 3 2 35 35 H 1.07998 * 126.57842 * 180.11969 * 5 4 3 36 36 H 1.08997 * 109.50202 * 300.74372 * 9 7 6 37 37 H 1.09001 * 109.50383 * 60.82486 * 9 7 6 38 38 H 1.09003 * 109.47561 * 59.99486 * 12 10 9 39 39 H 1.09008 * 109.47175 * 179.97438 * 12 10 9 40 40 H 1.09002 * 109.47152 * 299.99488 * 12 10 9 41 41 H 1.09002 * 109.50204 * 62.28934 * 13 10 9 42 42 H 1.08999 * 109.50387 * 182.40994 * 13 10 9 43 43 H 1.08997 * 109.46332 * 179.19756 * 14 13 10 44 44 H 1.09003 * 109.46095 * 299.17547 * 14 13 10 45 45 H 1.09006 * 109.47089 * 59.41043 * 16 15 14 46 46 H 1.08990 * 109.47426 * 179.41413 * 16 15 14 47 47 H 0.97000 * 120.00266 * 182.11186 * 21 20 18 48 48 H 1.09001 * 117.49629 * 359.97438 * 26 17 16 49 49 H 1.08998 * 117.49959 * 145.02489 * 26 17 16 50 50 H 1.09004 * 117.49826 * 214.97645 * 27 17 16 51 51 H 1.08997 * 117.50224 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2055 2.1939 1.0871 5 6 2.6912 3.4406 0.6299 6 6 2.7779 3.3575 -0.7098 7 6 3.2446 4.4538 -1.6324 8 1 3.7289 5.2373 -1.0496 9 6 2.0426 5.0405 -2.3761 10 6 2.5239 6.1401 -3.3269 11 1 2.9822 6.9443 -2.7514 12 6 1.3347 6.6888 -4.1176 13 6 3.5544 5.5519 -4.2947 14 6 4.7125 4.9504 -3.4954 15 7 4.2006 3.9035 -2.6018 16 6 5.3009 3.2090 -1.9199 17 6 6.2092 2.5489 -2.9592 18 6 5.5278 1.5939 -3.9051 19 1 5.8595 1.5204 -4.9302 20 6 4.4808 0.8140 -3.4617 21 7 4.3079 0.6163 -2.1730 22 14 3.3081 0.0381 -4.6913 23 1 3.7170 0.4116 -6.0691 24 1 3.3455 -1.4393 -4.5467 25 1 1.9289 0.5257 -4.4355 26 6 7.6439 2.2236 -2.5388 27 6 7.3728 3.3770 -3.5081 28 8 2.3776 2.1318 -1.0858 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 2.0128 1.9151 2.1125 35 1 2.9404 4.2968 1.2392 36 1 1.5498 4.2547 -2.9484 37 1 1.3402 5.4622 -1.6570 38 1 0.5991 7.1022 -3.4275 39 1 1.6782 7.4718 -4.7939 40 1 0.8795 5.8839 -4.6946 41 1 3.0853 4.7741 -4.8972 42 1 3.9325 6.3395 -4.9465 43 1 5.4412 4.5181 -4.1812 44 1 5.1897 5.7315 -2.9036 45 1 5.8778 3.9269 -1.3368 46 1 4.8934 2.4461 -1.2568 47 1 3.5899 0.0429 -1.8624 48 1 7.9407 2.4802 -1.5218 49 1 8.0951 1.3191 -2.9466 50 1 7.6458 3.2306 -4.5532 51 1 7.4910 4.3921 -3.1292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001657428042.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:42 Heat of formation + Delta-G solvation = 34.059543 kcal Electronic energy + Delta-G solvation = -29457.036146 eV Core-core repulsion = 25937.426454 eV Total energy + Delta-G solvation = -3519.609693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83909 -38.78687 -36.42288 -33.96187 -33.37737 -32.21179 -31.89057 -30.80421 -28.26349 -27.17746 -25.46393 -24.23801 -23.66377 -22.36131 -21.23812 -20.96709 -20.76044 -19.39678 -19.00735 -18.76114 -16.23556 -16.05393 -15.14055 -14.85749 -14.59598 -14.41323 -14.26551 -13.99319 -13.79672 -13.64198 -13.40987 -13.09457 -12.66472 -12.63493 -12.29709 -12.03722 -11.98460 -11.79590 -11.67613 -11.46364 -11.34499 -11.22631 -11.07391 -10.79701 -10.76384 -10.66438 -10.51285 -10.35410 -10.27833 -10.08678 -9.91036 -9.78814 -9.13477 -9.07494 -9.00163 -8.46261 -7.81485 -7.51920 -7.23391 -5.84286 -3.76578 2.52819 3.26061 3.40548 3.50428 3.53387 3.68753 4.58472 4.62994 4.97650 5.13772 5.18508 5.21397 5.25140 5.36036 5.53339 5.55456 5.65673 5.68551 5.72948 5.75521 5.80756 5.84203 5.93961 5.96271 6.02842 6.04904 6.07096 6.15808 6.17592 6.30293 6.34691 6.37285 6.40009 6.44643 6.47699 6.53150 6.62061 6.63495 6.72246 6.74515 6.81842 6.87232 6.89556 7.03160 7.20172 7.26275 7.41667 7.69289 7.99712 8.12140 8.18285 8.25078 8.65667 9.12478 9.80227 11.21237 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009056 B = 0.007600 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.132765 B = 3683.099885 C = 4830.455470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.005 3.995 4 C -0.226 4.226 5 C -0.232 4.232 6 C 0.026 3.974 7 C 0.164 3.836 8 H 0.050 0.950 9 C -0.102 4.102 10 C -0.091 4.091 11 H 0.062 0.938 12 C -0.143 4.143 13 C -0.111 4.111 14 C 0.058 3.942 15 N -0.494 5.494 16 C 0.099 3.901 17 C 0.074 3.926 18 C -0.487 4.487 19 H 0.052 0.948 20 C 0.103 3.897 21 N -0.850 5.850 22 Si 0.874 3.126 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.281 1.281 26 C -0.207 4.207 27 C -0.221 4.221 28 O -0.116 6.116 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.012 0.988 45 H -0.016 1.016 46 H 0.120 0.880 47 H 0.256 0.744 48 H 0.059 0.941 49 H 0.076 0.924 50 H 0.072 0.928 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.802 6.744 3.718 10.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.047 4.047 4 C -0.246 4.246 5 C -0.252 4.252 6 C -0.026 4.026 7 C 0.055 3.945 8 H 0.068 0.932 9 C -0.140 4.140 10 C -0.110 4.110 11 H 0.080 0.920 12 C -0.200 4.200 13 C -0.149 4.149 14 C -0.070 4.070 15 N -0.217 5.217 16 C -0.027 4.027 17 C 0.073 3.927 18 C -0.524 4.524 19 H 0.070 0.930 20 C -0.103 4.103 21 N -0.486 5.486 22 Si 0.702 3.298 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.207 1.207 26 C -0.246 4.246 27 C -0.258 4.258 28 O -0.008 6.008 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.151 0.849 35 H 0.150 0.850 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.113 0.887 44 H 0.030 0.970 45 H 0.002 0.998 46 H 0.137 0.863 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.216 6.216 3.259 10.067 hybrid contribution 0.069 0.307 0.201 0.373 sum -7.148 6.523 3.460 10.277 Atomic orbital electron populations 1.21774 0.94860 1.01603 1.02140 1.20007 0.95233 0.88824 1.04020 1.22129 1.02779 0.94911 0.84921 1.21233 1.09968 0.94722 0.98648 1.21294 1.10532 0.99526 0.93862 1.22008 1.01900 0.85524 0.93203 1.20059 0.94037 0.89576 0.90802 0.93205 1.21669 0.96457 0.97974 0.97908 1.21167 0.96141 0.97014 0.96683 0.91964 1.21792 0.97792 1.00646 0.99800 1.21672 0.96136 0.99528 0.97569 1.22140 0.96569 0.92061 0.96257 1.61777 1.16307 1.25339 1.18318 1.21791 0.89988 0.95268 0.95668 1.18871 0.84393 0.94602 0.94832 1.20133 1.15736 1.21430 0.95094 0.92980 1.24590 0.96315 0.95005 0.94391 1.69906 1.30360 1.35346 1.12959 0.86859 0.82459 0.77948 0.82526 1.20181 1.21958 1.20713 1.22980 1.07075 0.98054 0.96457 1.22976 1.11113 0.93987 0.97735 1.84227 1.61850 1.21276 1.33479 0.92544 0.92222 0.92618 0.89642 0.89819 0.84892 0.84961 0.90712 0.92170 0.93182 0.92990 0.92598 0.90890 0.92446 0.88739 0.97016 0.99781 0.86268 0.93286 0.92290 0.90507 0.90896 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.89 37.16 0.37 -1.54 16 2 C -0.04 -0.68 6.37 -27.88 -0.18 -0.86 16 3 C 0.00 0.09 6.22 -35.62 -0.22 -0.13 16 4 C -0.23 -3.99 10.81 -39.70 -0.43 -4.42 16 5 C -0.23 -4.23 10.79 -39.70 -0.43 -4.66 16 6 C 0.03 0.52 4.36 -35.63 -0.16 0.37 16 7 C 0.16 3.06 2.31 -68.87 -0.16 2.90 16 8 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 9 C -0.10 -1.65 4.64 -26.65 -0.12 -1.78 16 10 C -0.09 -1.29 2.79 -90.50 -0.25 -1.55 16 11 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 12 C -0.14 -1.71 9.20 37.15 0.34 -1.37 16 13 C -0.11 -1.77 5.38 -26.65 -0.14 -1.91 16 14 C 0.06 1.08 4.99 -3.83 -0.02 1.06 16 15 N -0.49 -10.37 4.21 -228.07 -0.96 -11.33 16 16 C 0.10 2.32 3.93 -3.82 -0.02 2.31 16 17 C 0.07 1.80 1.22 -155.66 -0.19 1.61 16 18 C -0.49 -13.06 8.72 -34.44 -0.30 -13.36 16 19 H 0.05 1.44 7.88 -52.49 -0.41 1.03 16 20 C 0.10 2.72 5.09 -17.82 -0.09 2.63 16 21 N -0.85 -22.46 9.40 55.43 0.52 -21.94 16 22 Si 0.87 21.33 29.58 -169.99 -5.03 16.30 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 C -0.21 -4.80 9.96 -26.69 -0.27 -5.07 16 27 C -0.22 -4.81 7.98 -26.69 -0.21 -5.02 16 28 O -0.12 -2.51 8.38 5.70 0.05 -2.46 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.45 6.82 -51.93 -0.35 1.10 16 34 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 35 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.09 1.93 5.58 -51.93 -0.29 1.64 16 44 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 45 H -0.02 -0.36 8.10 -51.93 -0.42 -0.79 16 46 H 0.12 3.10 4.48 -51.93 -0.23 2.87 16 47 H 0.26 6.52 6.21 -40.82 -0.25 6.26 16 48 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 49 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 50 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 51 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -27.78 389.22 -11.24 -39.02 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -9.21 Total: 5.34 kcal Atomic # 6 Polarization: -28.32 SS G_CDS: -2.48 Total: -30.79 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: -0.44 Total: -33.26 kcal Atomic # 8 Polarization: -2.51 SS G_CDS: 0.05 Total: -2.46 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -27.78 -11.24 -39.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657428042.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.081 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds