Wall clock time and date at job start Tue Mar 31 2020 12:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47118 * 2 1 4 4 C 1.34515 * 125.78858 * 85.03407 * 3 2 1 5 5 C 1.41386 * 106.84123 * 179.88938 * 4 3 2 6 6 C 1.34508 * 106.83989 * 0.37304 * 5 4 3 7 7 C 1.50697 * 125.79083 * 179.75135 * 6 5 4 8 8 H 1.08999 * 109.45907 * 13.66617 * 7 6 5 9 9 C 1.53035 * 109.46309 * 253.68724 * 7 6 5 10 10 C 1.53124 * 109.27850 * 180.80579 * 9 7 6 11 11 H 1.08998 * 109.51870 * 297.74867 * 10 9 7 12 12 C 1.52991 * 109.52131 * 177.56091 * 10 9 7 13 13 C 1.53117 * 109.16157 * 57.65230 * 10 9 7 14 14 C 1.53036 * 109.27874 * 302.34758 * 13 10 9 15 15 N 1.46849 * 109.52444 * 59.18105 * 14 13 10 16 16 C 1.46902 * 111.00164 * 174.16265 * 15 14 13 17 17 C 1.53002 * 109.46988 * 299.41397 * 16 15 14 18 18 C 1.50705 * 115.54894 * 303.87482 * 17 16 15 19 19 H 1.07997 * 119.99916 * 145.10705 * 18 17 16 20 20 C 1.37873 * 119.99930 * 325.11119 * 18 17 16 21 21 N 1.31519 * 119.99945 * 341.25841 * 20 18 17 22 22 Si 1.86794 * 120.00225 * 161.26443 * 20 18 17 23 23 H 1.48497 * 109.47217 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47330 * 119.99844 * 22 20 18 25 25 H 1.48502 * 109.47240 * 239.99967 * 22 20 18 26 26 C 1.53000 * 117.50027 * 158.20540 * 17 16 15 27 27 C 1.53000 * 117.49778 * 89.54102 * 17 16 15 28 28 O 1.34299 * 125.79110 * 265.33762 * 3 2 1 29 29 H 1.09000 * 109.46825 * 59.99808 * 1 2 3 30 30 H 1.09002 * 109.47155 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47181 * 300.00128 * 1 2 3 32 32 H 1.09002 * 109.47283 * 119.99947 * 2 1 3 33 33 H 1.09001 * 109.47189 * 239.99880 * 2 1 3 34 34 H 1.08000 * 126.57731 * 0.02562 * 4 3 2 35 35 H 1.07998 * 126.57842 * 180.11969 * 5 4 3 36 36 H 1.08997 * 109.50202 * 300.74372 * 9 7 6 37 37 H 1.09001 * 109.50383 * 60.82486 * 9 7 6 38 38 H 1.09003 * 109.47561 * 59.99486 * 12 10 9 39 39 H 1.09008 * 109.47175 * 179.97438 * 12 10 9 40 40 H 1.09002 * 109.47152 * 299.99488 * 12 10 9 41 41 H 1.09002 * 109.50204 * 62.28934 * 13 10 9 42 42 H 1.08999 * 109.50387 * 182.40994 * 13 10 9 43 43 H 1.08997 * 109.46332 * 179.19756 * 14 13 10 44 44 H 1.09003 * 109.46095 * 299.17547 * 14 13 10 45 45 H 1.09006 * 109.47089 * 59.41043 * 16 15 14 46 46 H 1.08990 * 109.47426 * 179.41413 * 16 15 14 47 47 H 0.97000 * 120.00266 * 182.11186 * 21 20 18 48 48 H 1.09001 * 117.49629 * 359.97438 * 26 17 16 49 49 H 1.08998 * 117.49959 * 145.02489 * 26 17 16 50 50 H 1.09004 * 117.49826 * 214.97645 * 27 17 16 51 51 H 1.08997 * 117.50224 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2055 2.1939 1.0871 5 6 2.6912 3.4406 0.6299 6 6 2.7779 3.3575 -0.7098 7 6 3.2446 4.4538 -1.6324 8 1 3.7289 5.2373 -1.0496 9 6 2.0426 5.0405 -2.3761 10 6 2.5239 6.1401 -3.3269 11 1 2.9822 6.9443 -2.7514 12 6 1.3347 6.6888 -4.1176 13 6 3.5544 5.5519 -4.2947 14 6 4.7125 4.9504 -3.4954 15 7 4.2006 3.9035 -2.6018 16 6 5.3009 3.2090 -1.9199 17 6 6.2092 2.5489 -2.9592 18 6 5.5278 1.5939 -3.9051 19 1 5.8595 1.5204 -4.9302 20 6 4.4808 0.8140 -3.4617 21 7 4.3079 0.6163 -2.1730 22 14 3.3081 0.0381 -4.6913 23 1 3.7170 0.4116 -6.0691 24 1 3.3455 -1.4393 -4.5467 25 1 1.9289 0.5257 -4.4355 26 6 7.6439 2.2236 -2.5388 27 6 7.3728 3.3770 -3.5081 28 8 2.3776 2.1318 -1.0858 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 2.0128 1.9151 2.1125 35 1 2.9404 4.2968 1.2392 36 1 1.5498 4.2547 -2.9484 37 1 1.3402 5.4622 -1.6570 38 1 0.5991 7.1022 -3.4275 39 1 1.6782 7.4718 -4.7939 40 1 0.8795 5.8839 -4.6946 41 1 3.0853 4.7741 -4.8972 42 1 3.9325 6.3395 -4.9465 43 1 5.4412 4.5181 -4.1812 44 1 5.1897 5.7315 -2.9036 45 1 5.8778 3.9269 -1.3368 46 1 4.8934 2.4461 -1.2568 47 1 3.5899 0.0429 -1.8624 48 1 7.9407 2.4802 -1.5218 49 1 8.0951 1.3191 -2.9466 50 1 7.6458 3.2306 -4.5532 51 1 7.4910 4.3921 -3.1292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001657428042.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:41 Heat of formation + Delta-G solvation = 22.332273 kcal Electronic energy + Delta-G solvation = -29457.544679 eV Core-core repulsion = 25937.426454 eV Total energy + Delta-G solvation = -3520.118226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.27376 -40.26173 -38.11987 -35.24126 -34.73381 -33.96181 -33.60700 -32.15716 -29.62978 -28.46719 -27.41631 -25.81204 -24.93363 -23.78492 -22.78734 -22.52682 -22.15294 -20.82921 -20.59311 -20.35780 -18.07494 -17.52091 -16.60799 -16.54331 -16.30400 -15.89820 -15.64848 -15.43047 -15.26515 -15.03386 -14.79267 -14.60960 -14.17657 -13.83209 -13.79499 -13.39039 -13.32630 -13.16214 -13.14033 -12.94326 -12.81594 -12.70306 -12.64187 -12.38838 -12.30005 -12.24761 -12.10955 -11.95967 -11.81834 -11.54572 -11.28740 -11.22643 -10.98282 -10.89978 -10.51696 -10.30987 -9.76450 -8.93724 -8.80529 -7.87506 -5.83768 1.09772 1.39764 1.48365 1.52519 1.87899 2.32537 2.55718 3.08428 3.32368 3.67552 3.81083 3.94404 3.97753 3.99720 4.16448 4.26740 4.28350 4.33492 4.39443 4.42531 4.45153 4.51766 4.62863 4.65793 4.75260 4.76407 4.83063 4.85689 4.92654 4.93806 4.95193 4.96814 4.98880 5.08545 5.09923 5.15732 5.18252 5.21816 5.27021 5.30486 5.32728 5.39759 5.49133 5.50098 5.57134 5.61439 5.77860 5.88292 6.13764 6.47237 6.51022 6.72308 6.72962 7.07767 7.73040 9.16154 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.009056 B = 0.007600 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.132765 B = 3683.099885 C = 4830.455470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 C -0.015 4.015 4 C -0.227 4.227 5 C -0.233 4.233 6 C 0.000 4.000 7 C 0.162 3.838 8 H 0.061 0.939 9 C -0.095 4.095 10 C -0.085 4.085 11 H 0.079 0.921 12 C -0.138 4.138 13 C -0.106 4.106 14 C 0.058 3.942 15 N -0.511 5.511 16 C 0.115 3.885 17 C 0.051 3.949 18 C -0.505 4.505 19 H 0.033 0.967 20 C 0.077 3.923 21 N -0.854 5.854 22 Si 0.912 3.088 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.288 1.288 26 C -0.212 4.212 27 C -0.194 4.194 28 O -0.149 6.149 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.160 0.840 35 H 0.154 0.846 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.024 0.976 45 H -0.017 1.017 46 H 0.092 0.908 47 H 0.257 0.743 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.072 0.928 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.643 8.395 4.631 12.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 C -0.066 4.066 4 C -0.246 4.246 5 C -0.252 4.252 6 C -0.051 4.051 7 C 0.053 3.947 8 H 0.079 0.921 9 C -0.132 4.132 10 C -0.104 4.104 11 H 0.098 0.902 12 C -0.195 4.195 13 C -0.144 4.144 14 C -0.070 4.070 15 N -0.236 5.236 16 C -0.012 4.012 17 C 0.050 3.950 18 C -0.542 4.542 19 H 0.051 0.949 20 C -0.128 4.128 21 N -0.489 5.489 22 Si 0.740 3.260 23 H -0.206 1.206 24 H -0.215 1.215 25 H -0.214 1.214 26 C -0.251 4.251 27 C -0.231 4.231 28 O -0.043 6.043 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.178 0.822 35 H 0.172 0.828 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.042 0.958 45 H 0.001 0.999 46 H 0.110 0.890 47 H 0.068 0.932 48 H 0.086 0.914 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.055 7.868 4.171 12.008 hybrid contribution 0.352 -0.243 -0.054 0.431 sum -7.704 7.625 4.117 11.595 Atomic orbital electron populations 1.21723 0.92740 1.03084 1.01970 1.20150 0.97051 0.87228 1.03762 1.22788 1.02963 0.96060 0.84824 1.21576 1.09199 0.94271 0.99589 1.21639 1.09655 1.00440 0.93499 1.22382 1.02966 0.85564 0.94234 1.20202 0.94234 0.89556 0.90663 0.92142 1.21622 0.95658 0.97758 0.98201 1.21148 0.96531 0.96522 0.96151 0.90248 1.21743 0.97076 1.00682 1.00004 1.21635 0.95574 0.99476 0.97684 1.22132 0.97338 0.91682 0.95824 1.61674 1.15930 1.26804 1.19153 1.21444 0.90225 0.94652 0.94904 1.18919 0.85040 0.95491 0.95523 1.20193 1.16734 1.22551 0.94700 0.94864 1.24928 0.97009 0.95520 0.95327 1.69946 1.30396 1.35306 1.13292 0.86266 0.80960 0.77560 0.81185 1.20584 1.21517 1.21407 1.22967 1.06295 0.98489 0.97339 1.22903 1.08407 0.94358 0.97426 1.84184 1.62699 1.22292 1.35113 0.94224 0.89916 0.91192 0.87616 0.92216 0.82212 0.82797 0.93552 0.90320 0.91712 0.91275 0.93685 0.93284 0.89888 0.90972 0.95783 0.99927 0.89030 0.93159 0.91385 0.91546 0.90911 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.89 71.98 0.71 -2.71 16 2 C -0.04 -1.39 6.37 29.85 0.19 -1.19 16 3 C -0.01 -0.56 6.22 24.83 0.15 -0.41 16 4 C -0.23 -7.72 10.81 22.19 0.24 -7.48 16 5 C -0.23 -8.20 10.79 22.19 0.24 -7.96 16 6 C 0.00 0.01 4.36 24.83 0.11 0.12 16 7 C 0.16 5.94 2.31 44.19 0.10 6.04 16 8 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 9 C -0.09 -2.96 4.64 30.65 0.14 -2.82 16 10 C -0.09 -2.21 2.79 -10.72 -0.03 -2.24 16 11 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 12 C -0.14 -2.93 9.20 71.98 0.66 -2.27 16 13 C -0.11 -3.22 5.38 30.65 0.16 -3.06 16 14 C 0.06 2.11 4.99 86.33 0.43 2.54 16 15 N -0.51 -21.53 4.21 -875.49 -3.68 -25.22 16 16 C 0.12 5.41 3.93 86.30 0.34 5.75 16 17 C 0.05 2.51 1.22 -52.93 -0.06 2.45 16 18 C -0.51 -27.74 8.72 25.60 0.22 -27.51 16 19 H 0.03 1.90 7.88 -2.91 -0.02 1.87 16 20 C 0.08 4.20 5.09 84.65 0.43 4.63 16 21 N -0.85 -46.17 9.40 21.45 0.20 -45.97 16 22 Si 0.91 44.86 29.58 68.60 2.03 46.89 16 23 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 26 C -0.21 -9.86 9.96 30.62 0.30 -9.56 16 27 C -0.19 -8.32 7.98 30.62 0.24 -8.08 16 28 O -0.15 -6.58 8.38 -2.52 -0.02 -6.60 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.06 2.12 6.82 -2.39 -0.02 2.10 16 34 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.07 2.94 5.58 -2.39 -0.01 2.92 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 45 H -0.02 -0.79 8.10 -2.38 -0.02 -0.81 16 46 H 0.09 4.85 4.48 -2.39 -0.01 4.84 16 47 H 0.26 13.46 6.21 -92.71 -0.58 12.88 16 48 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 49 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 50 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 51 H 0.08 3.15 8.09 -2.39 -0.02 3.13 16 Total: -1.00 -61.10 389.22 4.19 -56.91 By element: Atomic # 1 Polarization: 26.67 SS G_CDS: 1.07 Total: 27.74 kcal Atomic # 6 Polarization: -58.35 SS G_CDS: 4.60 Total: -53.76 kcal Atomic # 7 Polarization: -67.71 SS G_CDS: -3.48 Total: -71.19 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.02 Total: -6.60 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -61.10 4.19 -56.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001657428042.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.244 kcal (2) G-P(sol) polarization free energy of solvation -61.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds