Wall clock time and date at job start Tue Mar 31 2020 11:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47221 * 2 1 4 4 C 1.53004 * 109.47053 * 240.00140 * 2 1 3 5 5 O 1.42905 * 109.47476 * 120.00499 * 2 1 3 6 6 C 1.42899 * 114.00130 * 59.99533 * 5 2 1 7 7 H 1.08999 * 112.84775 * 341.20060 * 6 5 2 8 8 C 1.53780 * 113.61281 * 112.50405 * 6 5 2 9 9 C 1.53787 * 87.07919 * 89.11726 * 8 6 5 10 10 H 1.08993 * 113.68667 * 139.98998 * 9 8 6 11 11 N 1.46498 * 113.61153 * 270.88324 * 9 8 6 12 12 C 1.39681 * 119.99722 * 252.49451 * 11 9 8 13 13 C 1.39344 * 119.95465 * 359.73354 * 12 11 9 14 14 C 1.38472 * 120.42224 * 179.71961 * 13 12 11 15 15 C 1.37687 * 120.32716 * 0.55226 * 14 13 12 16 16 C 1.40744 * 119.89248 * 359.72286 * 15 14 13 17 17 C 1.41413 * 120.21010 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00138 * 150.19474 * 17 16 15 19 19 C 1.39933 * 119.99900 * 330.19879 * 17 16 15 20 20 N 1.30831 * 119.99795 * 161.72411 * 19 17 16 21 21 Si 1.86801 * 119.99924 * 341.72765 * 19 17 16 22 22 H 1.48489 * 109.47171 * 95.41235 * 21 19 17 23 23 H 1.48504 * 109.46909 * 215.41377 * 21 19 17 24 24 H 1.48499 * 109.46955 * 335.40746 * 21 19 17 25 25 C 1.38277 * 119.95237 * 180.02562 * 12 11 9 26 26 C 1.53779 * 113.61620 * 210.00363 * 6 5 2 27 27 C 1.53004 * 113.61147 * 25.43187 * 26 6 5 28 28 C 1.53000 * 113.61503 * 156.33482 * 26 6 5 29 29 H 1.09007 * 109.46871 * 299.99191 * 1 2 3 30 30 H 1.08994 * 109.47349 * 59.99662 * 1 2 3 31 31 H 1.08998 * 109.46880 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47083 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47234 * 300.00408 * 3 2 1 34 34 H 1.09007 * 109.47062 * 60.00619 * 3 2 1 35 35 H 1.09000 * 109.47276 * 300.00118 * 4 2 1 36 36 H 1.09003 * 109.46966 * 59.99664 * 4 2 1 37 37 H 1.08995 * 109.47070 * 179.97438 * 4 2 1 38 38 H 1.08995 * 113.61277 * 203.66859 * 8 6 5 39 39 H 1.09000 * 113.61341 * 334.56974 * 8 6 5 40 40 H 0.96994 * 120.00422 * 72.50174 * 11 9 8 41 41 H 1.07998 * 119.78156 * 359.97438 * 13 12 11 42 42 H 1.08004 * 119.83440 * 180.27516 * 14 13 12 43 43 H 1.08000 * 120.05437 * 179.74240 * 15 14 13 44 44 H 0.97003 * 119.99624 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.16251 * 0.02562 * 25 12 11 46 46 H 1.08997 * 109.46875 * 79.51186 * 27 26 6 47 47 H 1.08997 * 109.46683 * 199.50688 * 27 26 6 48 48 H 1.08998 * 109.47111 * 319.50615 * 27 26 6 49 49 H 1.08996 * 109.46814 * 40.49867 * 28 26 6 50 50 H 1.08994 * 109.46732 * 160.49528 * 28 26 6 51 51 H 1.08993 * 109.47014 * 280.49734 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 1 0.7236 -2.2583 0.6344 8 6 2.7334 -3.0479 1.1211 9 6 2.9145 -2.9390 2.6444 10 1 3.1278 -3.8916 3.1292 11 7 3.8354 -1.8748 3.0512 12 6 5.1024 -2.1977 3.5427 13 6 5.4873 -3.5325 3.6508 14 6 6.7432 -3.8635 4.1313 15 6 7.6217 -2.8765 4.5184 16 6 7.2449 -1.5240 4.4203 17 6 8.1421 -0.5049 4.8155 18 1 8.1049 0.4626 4.3371 19 6 9.0781 -0.7502 5.8263 20 7 10.1221 0.0280 5.9539 21 14 8.8371 -2.1886 6.9934 22 1 9.6041 -3.3604 6.4998 23 1 9.3211 -1.8146 8.3466 24 1 7.3945 -2.5343 7.0618 25 6 5.9707 -1.1925 3.9269 26 6 1.4333 -2.5313 2.7123 27 6 1.1511 -1.4122 3.7168 28 6 0.4772 -3.7169 2.8573 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7489 -1.2494 36 1 1.6765 -0.2074 -2.1393 37 1 3.1299 -0.7208 -1.2495 38 1 2.4077 -4.0338 0.7895 39 1 3.5819 -2.6678 0.5523 40 1 3.5654 -0.9460 2.9794 41 1 4.8033 -4.3138 3.3541 42 1 7.0333 -4.9011 4.2069 43 1 8.5985 -3.1398 4.8964 44 1 10.7708 -0.1418 6.6549 45 1 5.6716 -0.1577 3.8484 46 1 0.0964 -1.1411 3.6718 47 1 1.3953 -1.7562 4.7218 48 1 1.7607 -0.5423 3.4723 49 1 0.6298 -4.4100 2.0301 50 1 0.6725 -4.2278 3.8001 51 1 -0.5517 -3.3575 2.8452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658128443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:05 Heat of formation + Delta-G solvation = -12.293566 kcal Electronic energy + Delta-G solvation = -27817.256170 eV Core-core repulsion = 24295.636455 eV Total energy + Delta-G solvation = -3521.619715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66296 -38.18659 -37.36387 -34.10079 -33.01848 -32.66762 -30.43318 -30.08866 -28.19416 -27.68335 -27.48458 -26.86178 -25.05488 -23.98288 -22.43728 -20.95448 -20.49770 -19.98271 -18.05169 -17.45571 -16.73146 -15.87477 -15.49188 -15.39383 -15.07993 -14.80936 -14.47190 -14.01523 -13.86892 -13.63399 -13.37006 -13.15348 -12.80333 -12.62486 -12.48290 -12.34126 -12.31596 -12.23930 -12.11213 -12.02129 -11.89804 -11.83473 -11.82064 -11.50461 -11.24113 -11.12987 -10.81401 -10.75951 -10.53048 -10.40763 -10.21545 -9.77548 -9.64385 -9.40512 -9.33495 -9.13528 -8.74754 -7.50047 -6.80765 -6.30990 -4.35958 2.78803 3.01623 3.24154 3.34295 3.40239 3.46478 4.12678 4.14317 4.51321 4.56568 4.66222 4.71470 4.76186 4.86642 4.98813 5.01559 5.15435 5.22802 5.30754 5.40359 5.52601 5.53527 5.60246 5.61673 5.65051 5.66685 5.69896 5.78100 5.85237 5.86466 5.89458 5.99089 6.07767 6.10197 6.13269 6.15762 6.23120 6.38047 6.46505 6.49221 6.68887 6.90898 6.99456 7.10943 7.33007 7.45113 7.70322 7.80647 7.92457 8.09880 8.46928 8.60581 8.67111 8.89186 9.01503 10.22386 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017462 B = 0.003475 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.092638 B = 8056.648403 C = 8844.237287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.109 3.891 3 C -0.139 4.139 4 C -0.175 4.175 5 O -0.346 6.346 6 C 0.076 3.924 7 H 0.070 0.930 8 C -0.183 4.183 9 C 0.158 3.842 10 H 0.087 0.913 11 N -0.730 5.730 12 C 0.240 3.760 13 C -0.302 4.302 14 C -0.049 4.049 15 C -0.274 4.274 16 C 0.127 3.873 17 C -0.452 4.452 18 H 0.087 0.913 19 C 0.086 3.914 20 N -0.816 5.816 21 Si 0.915 3.085 22 H -0.273 1.273 23 H -0.295 1.295 24 H -0.244 1.244 25 C -0.277 4.277 26 C -0.101 4.101 27 C -0.126 4.126 28 C -0.124 4.124 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.398 0.602 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.282 0.718 45 H 0.095 0.905 46 H 0.047 0.953 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.058 0.942 50 H 0.064 0.936 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.935 -3.404 -10.148 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.069 3.931 3 C -0.196 4.196 4 C -0.232 4.232 5 O -0.265 6.265 6 C 0.018 3.982 7 H 0.088 0.912 8 C -0.223 4.223 9 C 0.050 3.950 10 H 0.105 0.895 11 N -0.361 5.361 12 C 0.140 3.860 13 C -0.324 4.324 14 C -0.068 4.068 15 C -0.294 4.294 16 C 0.123 3.877 17 C -0.481 4.481 18 H 0.105 0.895 19 C -0.132 4.132 20 N -0.441 5.441 21 Si 0.742 3.258 22 H -0.199 1.199 23 H -0.223 1.223 24 H -0.167 1.167 25 C -0.301 4.301 26 C -0.102 4.102 27 C -0.183 4.183 28 C -0.181 4.181 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.234 0.766 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.114 0.886 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.083 0.917 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.634 -3.331 -9.929 22.253 hybrid contribution -0.141 -0.384 0.185 0.449 sum -19.775 -3.715 -9.744 22.356 Atomic orbital electron populations 1.22449 0.96052 1.02286 1.02580 1.21482 0.92716 0.93161 0.85695 1.21760 1.02401 0.93228 1.02219 1.22454 1.02544 1.00642 0.97594 1.87946 1.73675 1.22645 1.42189 1.23051 0.96171 0.82536 0.96481 0.91205 1.24081 0.99657 0.98819 0.99758 1.21507 0.87882 0.92350 0.93306 0.89478 1.44198 1.13002 1.06996 1.71889 1.17563 0.83807 0.93464 0.91147 1.19937 0.98822 0.93265 1.20406 1.20352 0.93326 0.96870 0.96219 1.20871 0.99923 0.93535 1.15084 1.17433 0.90338 0.91831 0.88087 1.19444 1.11400 1.00004 1.17275 0.89486 1.26124 0.92371 0.96748 0.97938 1.69718 1.07824 1.37141 1.29441 0.86275 0.81486 0.80476 0.77579 1.19887 1.22340 1.16747 1.20391 0.95162 0.96076 1.18454 1.22555 0.96395 0.96435 0.94817 1.21462 1.00560 0.98186 0.98137 1.21519 0.98014 0.96306 1.02275 0.91773 0.91817 0.92292 0.91488 0.91423 0.91806 0.92357 0.92012 0.91546 0.89588 0.90334 0.76606 0.89006 0.89228 0.88695 0.90737 0.88641 0.93437 0.92624 0.91366 0.92345 0.91700 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 8.38 37.15 0.31 -1.15 16 2 C 0.11 1.08 1.11 -90.62 -0.10 0.98 16 3 C -0.14 -1.33 8.84 37.16 0.33 -1.00 16 4 C -0.17 -1.64 8.38 37.16 0.31 -1.33 16 5 O -0.35 -4.24 7.27 -35.23 -0.26 -4.50 16 6 C 0.08 0.85 2.31 -25.92 -0.06 0.79 16 7 H 0.07 0.68 5.50 -51.93 -0.29 0.40 16 8 C -0.18 -2.29 7.36 -25.92 -0.19 -2.48 16 9 C 0.16 2.27 3.59 -67.12 -0.24 2.02 16 10 H 0.09 1.31 6.07 -51.93 -0.32 1.00 16 11 N -0.73 -12.85 4.84 -51.43 -0.25 -13.10 16 12 C 0.24 5.22 6.64 -83.86 -0.56 4.67 16 13 C -0.30 -6.52 9.28 -39.08 -0.36 -6.88 16 14 C -0.05 -1.11 10.01 -39.70 -0.40 -1.51 16 15 C -0.27 -6.96 7.17 -38.84 -0.28 -7.24 16 16 C 0.13 3.38 5.10 -106.85 -0.55 2.84 16 17 C -0.45 -12.84 9.57 -37.74 -0.36 -13.20 16 18 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 19 C 0.09 2.36 5.40 -17.34 -0.09 2.27 16 20 N -0.82 -22.68 13.93 55.55 0.77 -21.91 16 21 Si 0.91 21.96 24.52 -169.99 -4.17 17.80 16 22 H -0.27 -6.37 6.71 56.52 0.38 -5.99 16 23 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.24 -6.04 6.86 56.52 0.39 -5.65 16 25 C -0.28 -6.79 9.63 -38.68 -0.37 -7.16 16 26 C -0.10 -1.16 1.34 -153.69 -0.21 -1.36 16 27 C -0.13 -1.54 8.45 37.16 0.31 -1.23 16 28 C -0.12 -1.14 9.07 37.16 0.34 -0.80 16 29 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.47 6.24 -51.93 -0.32 0.15 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.53 7.02 -51.93 -0.36 0.17 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.90 7.63 -51.93 -0.40 0.51 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.40 6.93 6.04 -40.82 -0.25 6.68 16 41 H 0.09 1.76 6.02 -52.49 -0.32 1.45 16 42 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 43 H 0.10 2.42 4.73 -52.49 -0.25 2.17 16 44 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 45 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.93 5.64 -51.93 -0.29 0.63 16 49 H 0.06 0.48 7.32 -51.93 -0.38 0.10 16 50 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 385.25 15.07 5.81 5.81 Total: -1.00 -28.95 385.25 -8.94 -37.89 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -8.68 Total: 9.80 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: -2.16 Total: -31.78 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.52 Total: -35.01 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.26 Total: -4.50 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.17 Total: 17.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.95 -8.94 -37.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658128443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.597 kcal (2) G-P(sol) polarization free energy of solvation -28.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds