Wall clock time and date at job start Tue Mar 31 2020 11:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47221 * 2 1 4 4 C 1.53004 * 109.47053 * 240.00140 * 2 1 3 5 5 O 1.42905 * 109.47476 * 120.00499 * 2 1 3 6 6 C 1.42899 * 114.00130 * 59.99533 * 5 2 1 7 7 H 1.08999 * 112.84775 * 341.20060 * 6 5 2 8 8 C 1.53780 * 113.61281 * 112.50405 * 6 5 2 9 9 C 1.53787 * 87.07919 * 89.11726 * 8 6 5 10 10 H 1.08993 * 113.68667 * 139.98998 * 9 8 6 11 11 N 1.46498 * 113.61153 * 270.88324 * 9 8 6 12 12 C 1.39681 * 119.99722 * 252.49451 * 11 9 8 13 13 C 1.39344 * 119.95465 * 359.73354 * 12 11 9 14 14 C 1.38472 * 120.42224 * 179.71961 * 13 12 11 15 15 C 1.37687 * 120.32716 * 0.55226 * 14 13 12 16 16 C 1.40744 * 119.89248 * 359.72286 * 15 14 13 17 17 C 1.41413 * 120.21010 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00138 * 150.19474 * 17 16 15 19 19 C 1.39933 * 119.99900 * 330.19879 * 17 16 15 20 20 N 1.30831 * 119.99795 * 161.72411 * 19 17 16 21 21 Si 1.86801 * 119.99924 * 341.72765 * 19 17 16 22 22 H 1.48489 * 109.47171 * 95.41235 * 21 19 17 23 23 H 1.48504 * 109.46909 * 215.41377 * 21 19 17 24 24 H 1.48499 * 109.46955 * 335.40746 * 21 19 17 25 25 C 1.38277 * 119.95237 * 180.02562 * 12 11 9 26 26 C 1.53779 * 113.61620 * 210.00363 * 6 5 2 27 27 C 1.53004 * 113.61147 * 25.43187 * 26 6 5 28 28 C 1.53000 * 113.61503 * 156.33482 * 26 6 5 29 29 H 1.09007 * 109.46871 * 299.99191 * 1 2 3 30 30 H 1.08994 * 109.47349 * 59.99662 * 1 2 3 31 31 H 1.08998 * 109.46880 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47083 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47234 * 300.00408 * 3 2 1 34 34 H 1.09007 * 109.47062 * 60.00619 * 3 2 1 35 35 H 1.09000 * 109.47276 * 300.00118 * 4 2 1 36 36 H 1.09003 * 109.46966 * 59.99664 * 4 2 1 37 37 H 1.08995 * 109.47070 * 179.97438 * 4 2 1 38 38 H 1.08995 * 113.61277 * 203.66859 * 8 6 5 39 39 H 1.09000 * 113.61341 * 334.56974 * 8 6 5 40 40 H 0.96994 * 120.00422 * 72.50174 * 11 9 8 41 41 H 1.07998 * 119.78156 * 359.97438 * 13 12 11 42 42 H 1.08004 * 119.83440 * 180.27516 * 14 13 12 43 43 H 1.08000 * 120.05437 * 179.74240 * 15 14 13 44 44 H 0.97003 * 119.99624 * 179.97438 * 20 19 17 45 45 H 1.08000 * 120.16251 * 0.02562 * 25 12 11 46 46 H 1.08997 * 109.46875 * 79.51186 * 27 26 6 47 47 H 1.08997 * 109.46683 * 199.50688 * 27 26 6 48 48 H 1.08998 * 109.47111 * 319.50615 * 27 26 6 49 49 H 1.08996 * 109.46814 * 40.49867 * 28 26 6 50 50 H 1.08994 * 109.46732 * 160.49528 * 28 26 6 51 51 H 1.08993 * 109.47014 * 280.49734 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0064 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 1 0.7236 -2.2583 0.6344 8 6 2.7334 -3.0479 1.1211 9 6 2.9145 -2.9390 2.6444 10 1 3.1278 -3.8916 3.1292 11 7 3.8354 -1.8748 3.0512 12 6 5.1024 -2.1977 3.5427 13 6 5.4873 -3.5325 3.6508 14 6 6.7432 -3.8635 4.1313 15 6 7.6217 -2.8765 4.5184 16 6 7.2449 -1.5240 4.4203 17 6 8.1421 -0.5049 4.8155 18 1 8.1049 0.4626 4.3371 19 6 9.0781 -0.7502 5.8263 20 7 10.1221 0.0280 5.9539 21 14 8.8371 -2.1886 6.9934 22 1 9.6041 -3.3604 6.4998 23 1 9.3211 -1.8146 8.3466 24 1 7.3945 -2.5343 7.0618 25 6 5.9707 -1.1925 3.9269 26 6 1.4333 -2.5313 2.7123 27 6 1.1511 -1.4122 3.7168 28 6 0.4772 -3.7169 2.8573 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6766 -1.7489 -1.2494 36 1 1.6765 -0.2074 -2.1393 37 1 3.1299 -0.7208 -1.2495 38 1 2.4077 -4.0338 0.7895 39 1 3.5819 -2.6678 0.5523 40 1 3.5654 -0.9460 2.9794 41 1 4.8033 -4.3138 3.3541 42 1 7.0333 -4.9011 4.2069 43 1 8.5985 -3.1398 4.8964 44 1 10.7708 -0.1418 6.6549 45 1 5.6716 -0.1577 3.8484 46 1 0.0964 -1.1411 3.6718 47 1 1.3953 -1.7562 4.7218 48 1 1.7607 -0.5423 3.4723 49 1 0.6298 -4.4100 2.0301 50 1 0.6725 -4.2278 3.8001 51 1 -0.5517 -3.3575 2.8452 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658128443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:04 Heat of formation + Delta-G solvation = -27.356386 kcal Electronic energy + Delta-G solvation = -27817.909342 eV Core-core repulsion = 24295.636455 eV Total energy + Delta-G solvation = -3522.272887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66245 -39.64724 -38.60743 -35.89086 -34.53586 -33.75893 -32.03677 -31.42720 -29.69635 -28.41872 -28.21127 -27.86589 -26.97804 -25.18585 -23.47183 -22.76768 -22.10355 -20.94890 -19.30689 -19.14926 -17.85028 -17.51862 -16.79867 -16.43217 -16.34170 -16.28286 -15.88449 -15.29656 -14.98734 -14.81119 -14.52281 -14.34882 -14.28761 -14.04927 -13.83473 -13.49029 -13.46662 -13.32514 -13.10095 -12.99815 -12.85983 -12.85453 -12.73237 -12.66048 -12.62117 -12.61925 -12.34562 -12.03980 -11.94913 -11.60856 -11.44883 -11.41751 -11.27338 -11.02523 -10.71148 -10.38212 -10.22885 -9.45659 -8.86522 -7.98931 -6.48851 0.88072 1.12710 1.29687 1.44624 1.53762 2.18334 2.49265 2.68407 2.87915 3.54899 3.59387 3.68891 3.92377 3.97361 4.05528 4.06019 4.15100 4.31627 4.34010 4.41533 4.52642 4.67142 4.67838 4.69915 4.75077 4.76978 4.81359 4.83349 4.86530 4.92564 4.95053 4.97315 5.02222 5.04844 5.08407 5.11719 5.18143 5.20059 5.22646 5.29008 5.35377 5.38742 5.46517 5.53553 5.60263 5.82913 5.89492 6.02828 6.16195 6.40633 6.51825 6.76895 6.85485 6.97719 7.18173 8.22842 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017462 B = 0.003475 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.092638 B = 8056.648403 C = 8844.237287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 C -0.139 4.139 4 C -0.171 4.171 5 O -0.370 6.370 6 C 0.081 3.919 7 H 0.094 0.906 8 C -0.176 4.176 9 C 0.136 3.864 10 H 0.087 0.913 11 N -0.722 5.722 12 C 0.249 3.751 13 C -0.290 4.290 14 C -0.047 4.047 15 C -0.296 4.296 16 C 0.110 3.890 17 C -0.492 4.492 18 H 0.048 0.952 19 C 0.049 3.951 20 N -0.856 5.856 21 Si 0.973 3.027 22 H -0.258 1.258 23 H -0.279 1.279 24 H -0.256 1.256 25 C -0.300 4.300 26 C -0.089 4.089 27 C -0.124 4.124 28 C -0.121 4.121 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.114 0.886 39 H 0.053 0.947 40 H 0.397 0.603 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.092 0.908 44 H 0.292 0.708 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.043 0.957 48 H 0.047 0.953 49 H 0.073 0.927 50 H 0.063 0.937 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.308 -6.447 -11.093 26.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.062 3.938 3 C -0.197 4.197 4 C -0.228 4.228 5 O -0.290 6.290 6 C 0.023 3.977 7 H 0.111 0.889 8 C -0.216 4.216 9 C 0.029 3.971 10 H 0.105 0.895 11 N -0.351 5.351 12 C 0.146 3.854 13 C -0.312 4.312 14 C -0.065 4.065 15 C -0.317 4.317 16 C 0.107 3.893 17 C -0.522 4.522 18 H 0.066 0.934 19 C -0.165 4.165 20 N -0.483 5.483 21 Si 0.797 3.203 22 H -0.184 1.184 23 H -0.206 1.206 24 H -0.180 1.180 25 C -0.324 4.324 26 C -0.090 4.090 27 C -0.182 4.182 28 C -0.178 4.178 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.132 0.868 39 H 0.072 0.928 40 H 0.233 0.767 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.062 0.938 48 H 0.066 0.934 49 H 0.092 0.908 50 H 0.082 0.918 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.046 -6.370 -10.903 26.279 hybrid contribution 0.696 0.566 0.307 0.948 sum -22.350 -5.804 -10.596 25.406 Atomic orbital electron populations 1.22385 0.94218 1.02940 1.03170 1.21666 0.94102 0.92808 0.85179 1.21791 1.01037 0.93791 1.03044 1.22418 1.01110 1.01208 0.98100 1.87936 1.74353 1.23338 1.43345 1.23061 0.96238 0.81890 0.96492 0.88873 1.24069 0.99407 1.00686 0.97404 1.21892 0.89133 0.91154 0.94913 0.89539 1.44311 1.12000 1.08170 1.70581 1.17647 0.84847 0.93180 0.89754 1.20363 0.98900 0.93709 1.18274 1.20758 0.93035 0.98121 0.94613 1.20929 1.00646 0.93379 1.16721 1.17562 0.90756 0.92373 0.88642 1.19442 1.14045 0.99333 1.19352 0.93357 1.26816 0.91774 0.99200 0.98678 1.69742 1.08775 1.39000 1.30771 0.85385 0.80673 0.77980 0.76286 1.18366 1.20607 1.17970 1.20456 0.95609 0.96548 1.19828 1.22554 0.94620 0.97081 0.94794 1.21425 1.01327 0.97767 0.97665 1.21544 0.98044 0.95314 1.02927 0.92260 0.90207 0.91514 0.93631 0.89259 0.92335 0.91744 0.90238 0.93744 0.86761 0.92834 0.76667 0.85624 0.85583 0.89065 0.89747 0.89711 0.91602 0.93799 0.93391 0.90767 0.91786 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 8.38 71.98 0.60 -1.70 16 2 C 0.10 1.85 1.11 -10.79 -0.01 1.84 16 3 C -0.14 -2.62 8.84 71.98 0.64 -1.98 16 4 C -0.17 -2.89 8.38 71.98 0.60 -2.29 16 5 O -0.37 -8.64 7.27 -148.98 -1.08 -9.73 16 6 C 0.08 1.58 2.31 31.12 0.07 1.65 16 7 H 0.09 1.41 5.50 -2.39 -0.01 1.40 16 8 C -0.18 -3.89 7.36 31.12 0.23 -3.66 16 9 C 0.14 3.55 3.59 45.52 0.16 3.72 16 10 H 0.09 2.29 6.07 -2.39 -0.01 2.27 16 11 N -0.72 -24.92 4.84 -316.63 -1.53 -26.45 16 12 C 0.25 10.71 6.64 38.17 0.25 10.97 16 13 C -0.29 -11.79 9.28 22.59 0.21 -11.58 16 14 C -0.05 -2.02 10.01 22.20 0.22 -1.79 16 15 C -0.30 -15.04 7.17 22.75 0.16 -14.88 16 16 C 0.11 6.09 5.10 -21.31 -0.11 5.98 16 17 C -0.49 -29.85 9.57 23.46 0.22 -29.63 16 18 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 19 C 0.05 2.80 5.40 85.25 0.46 3.26 16 20 N -0.86 -49.75 13.93 21.82 0.30 -49.44 16 21 Si 0.97 46.06 24.52 68.60 1.68 47.74 16 22 H -0.26 -11.52 6.71 99.48 0.67 -10.85 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.26 -12.46 6.86 99.48 0.68 -11.77 16 25 C -0.30 -15.30 9.63 22.86 0.22 -15.08 16 26 C -0.09 -1.79 1.34 -51.65 -0.07 -1.86 16 27 C -0.12 -2.82 8.45 71.98 0.61 -2.21 16 28 C -0.12 -1.69 9.07 71.98 0.65 -1.04 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.80 6.24 -2.39 -0.01 0.79 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.06 1.00 7.02 -2.39 -0.02 0.98 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 1.89 7.63 -2.39 -0.02 1.87 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.40 14.01 6.04 -92.71 -0.56 13.45 16 41 H 0.13 4.28 6.02 -2.91 -0.02 4.26 16 42 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.09 4.63 4.73 -2.91 -0.01 4.62 16 44 H 0.29 15.21 8.30 -92.71 -0.77 14.45 16 45 H 0.08 4.36 8.06 -2.91 -0.02 4.33 16 46 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 48 H 0.05 1.28 5.64 -2.39 -0.01 1.26 16 49 H 0.07 0.83 7.32 -2.39 -0.02 0.81 16 50 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 51 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -66.63 385.25 4.79 -61.84 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.28 Total: 36.33 kcal Atomic # 6 Polarization: -65.41 SS G_CDS: 5.13 Total: -60.28 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.23 Total: -75.90 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: -1.08 Total: -9.73 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.68 Total: 47.74 kcal Total: -66.63 4.79 -61.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658128443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.484 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds