Wall clock time and date at job start Tue Mar 31 2020 11:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47689 * 2 1 4 4 C 1.53002 * 109.46730 * 239.99849 * 2 1 3 5 5 O 1.42902 * 109.47015 * 120.00547 * 2 1 3 6 6 C 1.42903 * 114.00103 * 59.99415 * 5 2 1 7 7 H 1.08996 * 112.85028 * 338.31106 * 6 5 2 8 8 C 1.53778 * 113.61288 * 109.50492 * 6 5 2 9 9 C 1.53787 * 87.07982 * 89.20124 * 8 6 5 10 10 H 1.09007 * 113.61004 * 270.79732 * 9 8 6 11 11 N 1.46495 * 113.61367 * 139.98479 * 9 8 6 12 12 C 1.39685 * 120.00758 * 104.50233 * 11 9 8 13 13 C 1.39335 * 119.94417 * 0.02562 * 12 11 9 14 14 C 1.38479 * 120.42283 * 179.97438 * 13 12 11 15 15 C 1.37689 * 120.32248 * 359.97086 * 14 13 12 16 16 C 1.40744 * 119.89588 * 0.02562 * 15 14 13 17 17 C 1.41406 * 120.21072 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00111 * 24.33672 * 17 16 15 19 19 C 1.39932 * 120.00120 * 204.34058 * 17 16 15 20 20 N 1.30834 * 120.00049 * 17.73150 * 19 17 16 21 21 Si 1.86805 * 119.99986 * 197.73476 * 19 17 16 22 22 H 1.48503 * 109.46877 * 59.99594 * 21 19 17 23 23 H 1.48501 * 109.47143 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47046 * 299.99935 * 21 19 17 25 25 C 1.38276 * 119.95287 * 179.71977 * 12 11 9 26 26 C 1.53781 * 87.08084 * 25.43167 * 9 8 6 27 27 C 1.52998 * 113.61373 * 89.11701 * 26 9 8 28 28 C 1.53001 * 113.61327 * 220.02048 * 26 9 8 29 29 H 1.09001 * 109.46610 * 300.00124 * 1 2 3 30 30 H 1.09000 * 109.47127 * 59.99298 * 1 2 3 31 31 H 1.08996 * 109.47488 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47311 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47409 * 300.00529 * 3 2 1 34 34 H 1.09004 * 109.46898 * 59.99806 * 3 2 1 35 35 H 1.08996 * 109.47515 * 300.00449 * 4 2 1 36 36 H 1.09004 * 109.47079 * 60.00379 * 4 2 1 37 37 H 1.09005 * 109.46933 * 180.02562 * 4 2 1 38 38 H 1.09002 * 113.61754 * 334.65534 * 8 6 5 39 39 H 1.08998 * 113.69328 * 203.75703 * 8 6 5 40 40 H 0.97009 * 119.99741 * 284.49706 * 11 9 8 41 41 H 1.07997 * 119.79093 * 359.97438 * 13 12 11 42 42 H 1.07995 * 119.84271 * 180.02562 * 14 13 12 43 43 H 1.08008 * 120.05295 * 180.02562 * 15 14 13 44 44 H 0.96996 * 119.99678 * 180.02562 * 20 19 17 45 45 H 1.07993 * 120.16553 * 0.02562 * 25 12 11 46 46 H 1.08997 * 109.46728 * 59.99839 * 27 26 9 47 47 H 1.08997 * 109.46861 * 179.97438 * 27 26 9 48 48 H 1.09005 * 109.46813 * 299.99872 * 27 26 9 49 49 H 1.08998 * 109.47263 * 59.99886 * 28 26 9 50 50 H 1.09001 * 109.47122 * 179.97438 * 28 26 9 51 51 H 1.08998 * 109.46960 * 300.00186 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0063 -0.6738 1.1667 6 6 1.5845 -2.0356 1.2644 7 1 0.6934 -2.2462 0.6732 8 6 2.7206 -3.0493 1.0485 9 6 2.9763 -2.9664 2.5627 10 1 3.6800 -2.1829 2.8444 11 7 3.2887 -4.2592 3.1767 12 6 4.6039 -4.5618 3.5373 13 6 5.6178 -3.6328 3.3129 14 6 6.9249 -3.9221 3.6670 15 6 7.2368 -5.1320 4.2457 16 6 6.2231 -6.0802 4.4786 17 6 6.5359 -7.3246 5.0730 18 1 7.4139 -7.4207 5.6945 19 6 5.7079 -8.4315 4.8558 20 7 4.8633 -8.4307 3.8566 21 14 5.8082 -9.9104 5.9927 22 1 5.4889 -9.4901 7.3808 23 1 4.8343 -10.9409 5.5515 24 1 7.1808 -10.4753 5.9500 25 6 4.8965 -5.7801 4.1221 26 6 1.5019 -2.5547 2.7096 27 6 0.5491 -3.7394 2.8818 28 6 1.2738 -1.4516 3.7450 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4423 -0.0005 33 1 1.6768 1.9564 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7217 -1.2491 38 1 3.5420 -2.6627 0.4452 39 1 2.3764 -4.0289 0.7169 40 1 2.5821 -4.9053 3.3330 41 1 5.3828 -2.6809 2.8600 42 1 7.7034 -3.1950 3.4892 43 1 8.2577 -5.3529 4.5205 44 1 4.2891 -9.1979 3.7063 45 1 4.1107 -6.4991 4.3006 46 1 0.8217 -4.2977 3.7773 47 1 -0.4726 -3.3725 2.9797 48 1 0.6195 -4.3917 2.0113 49 1 1.8329 -0.5614 3.4567 50 1 0.2114 -1.2130 3.7936 51 1 1.6148 -1.7942 4.7219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658128444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:08 Heat of formation + Delta-G solvation = -15.374924 kcal Electronic energy + Delta-G solvation = -27491.034445 eV Core-core repulsion = 23969.281113 eV Total energy + Delta-G solvation = -3521.753332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.51250 -38.14989 -37.15067 -34.04561 -33.15430 -32.45462 -30.33237 -29.36796 -27.90148 -27.56437 -27.45760 -27.20382 -25.12543 -23.57859 -22.33630 -21.00288 -20.24073 -19.81761 -18.05482 -17.20947 -16.68953 -15.86048 -15.42379 -15.25316 -14.90945 -14.80315 -14.33750 -13.93347 -13.86069 -13.35812 -13.27222 -13.03070 -12.72540 -12.56938 -12.48016 -12.21377 -12.16860 -12.14506 -11.99548 -11.95255 -11.86977 -11.76776 -11.58545 -11.38719 -11.08976 -11.02149 -10.90635 -10.69510 -10.62046 -10.36503 -10.23863 -9.78438 -9.52343 -9.35794 -9.31521 -9.14802 -8.63196 -7.23860 -6.67397 -6.06755 -4.25178 2.93197 3.11510 3.15364 3.30130 3.39998 3.46066 4.01641 4.42102 4.52321 4.59847 4.68566 4.74896 4.80840 4.85174 5.08365 5.13880 5.17512 5.30804 5.36676 5.38166 5.52391 5.57151 5.63209 5.65166 5.72392 5.76022 5.80152 5.85992 5.91891 5.96795 6.05292 6.07241 6.08729 6.14153 6.25181 6.31953 6.35710 6.49419 6.57570 6.72451 6.96339 7.18518 7.21055 7.33153 7.45714 7.52538 7.89716 8.03974 8.19620 8.24144 8.56311 8.80609 8.91460 9.07663 9.19746 10.31233 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002987 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.540935 B = 9371.592657 C = 9932.300862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 C -0.137 4.137 4 C -0.176 4.176 5 O -0.349 6.349 6 C 0.073 3.927 7 H 0.074 0.926 8 C -0.177 4.177 9 C 0.162 3.838 10 H 0.103 0.897 11 N -0.747 5.747 12 C 0.216 3.784 13 C -0.297 4.297 14 C -0.066 4.066 15 C -0.259 4.259 16 C 0.139 3.861 17 C -0.466 4.466 18 H 0.075 0.925 19 C 0.078 3.922 20 N -0.794 5.794 21 Si 0.903 3.097 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.267 1.267 25 C -0.231 4.231 26 C -0.093 4.093 27 C -0.130 4.130 28 C -0.130 4.130 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.389 0.611 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.277 0.723 45 H 0.116 0.884 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.059 0.941 49 H 0.067 0.933 50 H 0.047 0.953 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 13.333 -7.576 19.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.067 3.933 3 C -0.194 4.194 4 C -0.234 4.234 5 O -0.268 6.268 6 C 0.014 3.986 7 H 0.092 0.908 8 C -0.217 4.217 9 C 0.054 3.946 10 H 0.121 0.879 11 N -0.379 5.379 12 C 0.118 3.882 13 C -0.320 4.320 14 C -0.085 4.085 15 C -0.280 4.280 16 C 0.136 3.864 17 C -0.496 4.496 18 H 0.093 0.907 19 C -0.139 4.139 20 N -0.419 5.419 21 Si 0.728 3.272 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.191 1.191 25 C -0.255 4.255 26 C -0.094 4.094 27 C -0.187 4.187 28 C -0.187 4.187 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.224 0.776 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.105 0.895 44 H 0.087 0.913 45 H 0.133 0.867 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.066 0.934 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.857 13.434 -7.619 19.471 hybrid contribution -0.378 -1.171 0.144 1.239 sum -12.235 12.263 -7.475 18.867 Atomic orbital electron populations 1.22449 0.95987 1.02476 1.02548 1.21490 0.92881 0.93070 0.85819 1.21746 1.02106 0.93377 1.02203 1.22470 1.02431 1.00930 0.97527 1.87952 1.73771 1.22901 1.42159 1.22964 0.96682 0.82053 0.96869 0.90846 1.24094 0.98890 0.98865 0.99842 1.22098 0.93815 0.87688 0.90966 0.87915 1.44510 1.06765 1.16711 1.69931 1.17671 0.83167 0.93696 0.93694 1.19923 0.93124 0.99866 1.19046 1.20283 0.94580 0.95796 0.97857 1.20848 0.97551 0.96918 1.12638 1.17308 0.90293 0.91495 0.87304 1.19509 1.08991 0.93660 1.27429 0.90718 1.25860 0.93905 0.99956 0.94155 1.69866 1.18240 1.30338 1.23497 0.86459 0.78915 0.80313 0.81491 1.18966 1.20530 1.19133 1.20714 0.97481 0.95481 1.11851 1.22493 0.96814 0.95929 0.94207 1.21542 0.97938 0.96762 1.02501 1.21572 1.00873 0.98186 0.98064 0.91770 0.91794 0.92135 0.91715 0.91393 0.91882 0.92117 0.91982 0.91612 0.91082 0.89548 0.77592 0.89549 0.89759 0.89517 0.91253 0.86659 0.91381 0.92453 0.92213 0.91409 0.93360 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 8.38 37.16 0.31 -1.16 16 2 C 0.11 1.03 1.12 -90.62 -0.10 0.93 16 3 C -0.14 -1.16 8.84 37.16 0.33 -0.83 16 4 C -0.18 -1.63 8.31 37.16 0.31 -1.32 16 5 O -0.35 -4.31 8.46 -35.23 -0.30 -4.61 16 6 C 0.07 0.89 2.29 -25.92 -0.06 0.83 16 7 H 0.07 0.81 5.58 -51.93 -0.29 0.52 16 8 C -0.18 -2.56 7.14 -25.92 -0.19 -2.74 16 9 C 0.16 2.62 3.36 -67.12 -0.23 2.40 16 10 H 0.10 1.84 6.21 -51.93 -0.32 1.52 16 11 N -0.75 -14.37 5.43 -51.43 -0.28 -14.65 16 12 C 0.22 5.12 6.64 -83.86 -0.56 4.56 16 13 C -0.30 -6.94 9.27 -39.08 -0.36 -7.30 16 14 C -0.07 -1.58 10.02 -39.69 -0.40 -1.98 16 15 C -0.26 -6.70 9.79 -38.84 -0.38 -7.08 16 16 C 0.14 3.85 5.57 -106.85 -0.60 3.25 16 17 C -0.47 -12.78 9.05 -37.74 -0.34 -13.13 16 18 H 0.07 1.98 7.91 -52.49 -0.41 1.56 16 19 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 20 N -0.79 -20.91 10.96 55.55 0.61 -20.31 16 21 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 22 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 C -0.23 -6.13 8.53 -38.67 -0.33 -6.46 16 26 C -0.09 -1.21 1.35 -153.70 -0.21 -1.42 16 27 C -0.13 -1.54 8.08 37.16 0.30 -1.24 16 28 C -0.13 -1.64 9.05 37.16 0.34 -1.30 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.51 6.21 -51.93 -0.32 0.19 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.59 6.98 -51.93 -0.36 0.22 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.09 1.26 7.66 -51.93 -0.40 0.86 16 40 H 0.39 7.14 6.59 -40.82 -0.27 6.87 16 41 H 0.09 1.86 6.08 -52.49 -0.32 1.54 16 42 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 44 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 45 H 0.12 3.14 6.16 -52.49 -0.32 2.82 16 46 H 0.07 0.87 7.04 -51.93 -0.37 0.50 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.06 0.69 7.34 -51.93 -0.38 0.31 16 49 H 0.07 0.89 6.97 -51.93 -0.36 0.53 16 50 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -28.45 392.41 -10.09 -38.54 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -8.76 Total: 13.05 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: -2.25 Total: -32.07 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.33 Total: -34.95 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.30 Total: -4.61 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.45 -10.09 -38.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658128444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.168 kcal (2) G-P(sol) polarization free energy of solvation -28.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds