Wall clock time and date at job start Tue Mar 31 2020 11:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47689 * 2 1 4 4 C 1.53002 * 109.46730 * 239.99849 * 2 1 3 5 5 O 1.42902 * 109.47015 * 120.00547 * 2 1 3 6 6 C 1.42903 * 114.00103 * 59.99415 * 5 2 1 7 7 H 1.08996 * 112.85028 * 338.31106 * 6 5 2 8 8 C 1.53778 * 113.61288 * 109.50492 * 6 5 2 9 9 C 1.53787 * 87.07982 * 89.20124 * 8 6 5 10 10 H 1.09007 * 113.61004 * 270.79732 * 9 8 6 11 11 N 1.46495 * 113.61367 * 139.98479 * 9 8 6 12 12 C 1.39685 * 120.00758 * 104.50233 * 11 9 8 13 13 C 1.39335 * 119.94417 * 0.02562 * 12 11 9 14 14 C 1.38479 * 120.42283 * 179.97438 * 13 12 11 15 15 C 1.37689 * 120.32248 * 359.97086 * 14 13 12 16 16 C 1.40744 * 119.89588 * 0.02562 * 15 14 13 17 17 C 1.41406 * 120.21072 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00111 * 24.33672 * 17 16 15 19 19 C 1.39932 * 120.00120 * 204.34058 * 17 16 15 20 20 N 1.30834 * 120.00049 * 17.73150 * 19 17 16 21 21 Si 1.86805 * 119.99986 * 197.73476 * 19 17 16 22 22 H 1.48503 * 109.46877 * 59.99594 * 21 19 17 23 23 H 1.48501 * 109.47143 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47046 * 299.99935 * 21 19 17 25 25 C 1.38276 * 119.95287 * 179.71977 * 12 11 9 26 26 C 1.53781 * 87.08084 * 25.43167 * 9 8 6 27 27 C 1.52998 * 113.61373 * 89.11701 * 26 9 8 28 28 C 1.53001 * 113.61327 * 220.02048 * 26 9 8 29 29 H 1.09001 * 109.46610 * 300.00124 * 1 2 3 30 30 H 1.09000 * 109.47127 * 59.99298 * 1 2 3 31 31 H 1.08996 * 109.47488 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47311 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47409 * 300.00529 * 3 2 1 34 34 H 1.09004 * 109.46898 * 59.99806 * 3 2 1 35 35 H 1.08996 * 109.47515 * 300.00449 * 4 2 1 36 36 H 1.09004 * 109.47079 * 60.00379 * 4 2 1 37 37 H 1.09005 * 109.46933 * 180.02562 * 4 2 1 38 38 H 1.09002 * 113.61754 * 334.65534 * 8 6 5 39 39 H 1.08998 * 113.69328 * 203.75703 * 8 6 5 40 40 H 0.97009 * 119.99741 * 284.49706 * 11 9 8 41 41 H 1.07997 * 119.79093 * 359.97438 * 13 12 11 42 42 H 1.07995 * 119.84271 * 180.02562 * 14 13 12 43 43 H 1.08008 * 120.05295 * 180.02562 * 15 14 13 44 44 H 0.96996 * 119.99678 * 180.02562 * 20 19 17 45 45 H 1.07993 * 120.16553 * 0.02562 * 25 12 11 46 46 H 1.08997 * 109.46728 * 59.99839 * 27 26 9 47 47 H 1.08997 * 109.46861 * 179.97438 * 27 26 9 48 48 H 1.09005 * 109.46813 * 299.99872 * 27 26 9 49 49 H 1.08998 * 109.47263 * 59.99886 * 28 26 9 50 50 H 1.09001 * 109.47122 * 179.97438 * 28 26 9 51 51 H 1.08998 * 109.46960 * 300.00186 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0063 -0.6738 1.1667 6 6 1.5845 -2.0356 1.2644 7 1 0.6934 -2.2462 0.6732 8 6 2.7206 -3.0493 1.0485 9 6 2.9763 -2.9664 2.5627 10 1 3.6800 -2.1829 2.8444 11 7 3.2887 -4.2592 3.1767 12 6 4.6039 -4.5618 3.5373 13 6 5.6178 -3.6328 3.3129 14 6 6.9249 -3.9221 3.6670 15 6 7.2368 -5.1320 4.2457 16 6 6.2231 -6.0802 4.4786 17 6 6.5359 -7.3246 5.0730 18 1 7.4139 -7.4207 5.6945 19 6 5.7079 -8.4315 4.8558 20 7 4.8633 -8.4307 3.8566 21 14 5.8082 -9.9104 5.9927 22 1 5.4889 -9.4901 7.3808 23 1 4.8343 -10.9409 5.5515 24 1 7.1808 -10.4753 5.9500 25 6 4.8965 -5.7801 4.1221 26 6 1.5019 -2.5547 2.7096 27 6 0.5491 -3.7394 2.8818 28 6 1.2738 -1.4516 3.7450 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4423 -0.0005 33 1 1.6768 1.9564 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7217 -1.2491 38 1 3.5420 -2.6627 0.4452 39 1 2.3764 -4.0289 0.7169 40 1 2.5821 -4.9053 3.3330 41 1 5.3828 -2.6809 2.8600 42 1 7.7034 -3.1950 3.4892 43 1 8.2577 -5.3529 4.5205 44 1 4.2891 -9.1979 3.7063 45 1 4.1107 -6.4991 4.3006 46 1 0.8217 -4.2977 3.7773 47 1 -0.4726 -3.3725 2.9797 48 1 0.6195 -4.3917 2.0113 49 1 1.8329 -0.5614 3.4567 50 1 0.2114 -1.2130 3.7936 51 1 1.6148 -1.7942 4.7219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658128444.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:07 Heat of formation + Delta-G solvation = -28.607285 kcal Electronic energy + Delta-G solvation = -27491.608243 eV Core-core repulsion = 23969.281113 eV Total energy + Delta-G solvation = -3522.327131 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.61275 -39.53468 -38.57657 -35.81931 -34.63221 -33.63725 -31.48317 -31.31260 -29.38003 -28.43316 -28.28700 -28.14999 -27.08802 -24.87538 -23.47924 -22.88794 -21.69539 -21.01357 -19.34424 -18.96628 -17.71441 -17.52037 -16.66710 -16.53776 -16.37389 -16.14278 -15.74137 -15.16951 -14.91849 -14.62644 -14.49385 -14.34089 -14.14105 -13.89347 -13.77181 -13.52608 -13.37523 -13.11084 -13.05174 -12.98782 -12.84858 -12.77504 -12.70320 -12.63992 -12.59578 -12.57293 -12.17143 -12.14498 -11.94443 -11.61629 -11.52036 -11.39455 -11.24912 -11.00097 -10.81491 -10.35043 -10.29201 -9.24412 -8.60809 -7.86187 -6.30948 1.10050 1.34553 1.38531 1.49683 1.60150 2.23555 2.57895 2.81407 2.89839 3.48649 3.58353 3.83492 3.94439 3.98330 3.99718 4.06443 4.16251 4.25433 4.29660 4.50823 4.56710 4.68217 4.69138 4.72923 4.75802 4.78054 4.84740 4.87103 4.95080 4.96345 4.97106 4.99611 5.02457 5.06962 5.12824 5.16958 5.20992 5.23721 5.31590 5.38026 5.39092 5.43208 5.49258 5.53104 5.64851 5.98068 6.12072 6.22455 6.29438 6.45850 6.59862 6.96380 7.06667 7.09552 7.28863 8.39391 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.021574 B = 0.002987 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.540935 B = 9371.592657 C = 9932.300862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.097 3.903 3 C -0.136 4.136 4 C -0.175 4.175 5 O -0.366 6.366 6 C 0.091 3.909 7 H 0.095 0.905 8 C -0.174 4.174 9 C 0.146 3.854 10 H 0.085 0.915 11 N -0.739 5.739 12 C 0.222 3.778 13 C -0.303 4.303 14 C -0.063 4.063 15 C -0.287 4.287 16 C 0.110 3.890 17 C -0.505 4.505 18 H 0.071 0.929 19 C 0.038 3.962 20 N -0.821 5.821 21 Si 0.979 3.021 22 H -0.262 1.262 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.258 4.258 26 C -0.084 4.084 27 C -0.129 4.129 28 C -0.126 4.126 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.393 0.607 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.089 0.911 44 H 0.285 0.715 45 H 0.100 0.900 46 H 0.055 0.945 47 H 0.081 0.919 48 H 0.062 0.938 49 H 0.060 0.940 50 H 0.069 0.931 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.839 14.146 -8.390 21.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.193 4.193 4 C -0.232 4.232 5 O -0.286 6.286 6 C 0.033 3.967 7 H 0.112 0.888 8 C -0.214 4.214 9 C 0.040 3.960 10 H 0.103 0.897 11 N -0.370 5.370 12 C 0.121 3.879 13 C -0.326 4.326 14 C -0.082 4.082 15 C -0.308 4.308 16 C 0.107 3.893 17 C -0.534 4.534 18 H 0.089 0.911 19 C -0.177 4.177 20 N -0.447 5.447 21 Si 0.800 3.200 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.185 1.185 25 C -0.283 4.283 26 C -0.085 4.085 27 C -0.186 4.186 28 C -0.183 4.183 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.229 0.771 41 H 0.123 0.877 42 H 0.133 0.867 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.118 0.882 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.877 14.285 -8.459 21.637 hybrid contribution 0.224 -1.279 0.304 1.334 sum -13.653 13.006 -8.154 20.544 Atomic orbital electron populations 1.22414 0.94496 1.02721 1.03438 1.21757 0.94099 0.93331 0.84941 1.21772 1.01434 0.92867 1.03245 1.22459 1.01519 1.00923 0.98300 1.87947 1.74327 1.22707 1.43569 1.22760 0.96126 0.81764 0.96071 0.88760 1.24041 0.99708 0.99781 0.97881 1.22342 0.95852 0.85633 0.92215 0.89724 1.44590 1.05202 1.17975 1.69216 1.17780 0.85168 0.92748 0.92181 1.20198 0.93011 1.00515 1.18834 1.20621 0.95645 0.95559 0.96339 1.21001 0.97512 0.97898 1.14357 1.17709 0.91308 0.92349 0.87974 1.19767 1.10116 0.94773 1.28777 0.91099 1.26708 0.93044 1.02661 0.95303 1.69921 1.18621 1.31589 1.24531 0.85308 0.79318 0.76411 0.78939 1.18688 1.19060 1.18523 1.20638 0.96881 0.96558 1.14185 1.22457 0.94408 0.96475 0.95191 1.21554 0.98894 0.96152 1.02050 1.21532 1.02088 0.97584 0.97075 0.91861 0.89990 0.92146 0.92827 0.89212 0.91991 0.92578 0.89987 0.93050 0.92140 0.89573 0.77145 0.87673 0.86724 0.89269 0.90448 0.88160 0.92602 0.89981 0.91932 0.92063 0.91245 0.93904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 8.38 71.98 0.60 -1.73 16 2 C 0.10 1.67 1.12 -10.79 -0.01 1.66 16 3 C -0.14 -2.03 8.84 71.98 0.64 -1.40 16 4 C -0.17 -2.90 8.31 71.98 0.60 -2.30 16 5 O -0.37 -8.46 8.46 -148.98 -1.26 -9.72 16 6 C 0.09 2.06 2.29 31.12 0.07 2.13 16 7 H 0.09 1.78 5.58 -2.39 -0.01 1.77 16 8 C -0.17 -4.91 7.14 31.12 0.22 -4.69 16 9 C 0.15 4.68 3.36 45.52 0.15 4.83 16 10 H 0.08 3.04 6.21 -2.38 -0.01 3.02 16 11 N -0.74 -28.71 5.43 -316.62 -1.72 -30.43 16 12 C 0.22 10.76 6.64 38.16 0.25 11.01 16 13 C -0.30 -14.24 9.27 22.59 0.21 -14.03 16 14 C -0.06 -3.01 10.02 22.20 0.22 -2.79 16 15 C -0.29 -15.32 9.79 22.75 0.22 -15.10 16 16 C 0.11 6.32 5.57 -21.31 -0.12 6.20 16 17 C -0.50 -28.77 9.05 23.46 0.21 -28.56 16 18 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 19 C 0.04 1.98 5.14 85.25 0.44 2.42 16 20 N -0.82 -44.24 10.96 21.82 0.24 -44.00 16 21 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 22 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 23 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 C -0.26 -14.22 8.53 22.86 0.20 -14.03 16 26 C -0.08 -2.07 1.35 -51.66 -0.07 -2.14 16 27 C -0.13 -2.82 8.08 71.98 0.58 -2.24 16 28 C -0.13 -2.98 9.05 71.98 0.65 -2.33 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.81 6.21 -2.39 -0.01 0.80 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.97 6.98 -2.39 -0.02 0.95 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.09 2.43 7.66 -2.39 -0.02 2.41 16 40 H 0.39 14.61 6.59 -92.70 -0.61 14.00 16 41 H 0.11 4.49 6.08 -2.91 -0.02 4.48 16 42 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 43 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16 44 H 0.29 13.88 8.30 -92.71 -0.77 13.11 16 45 H 0.10 5.71 6.16 -2.91 -0.02 5.70 16 46 H 0.06 1.36 7.04 -2.39 -0.02 1.35 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 1.33 7.34 -2.38 -0.02 1.31 16 49 H 0.06 1.53 6.97 -2.39 -0.02 1.52 16 50 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -63.40 392.41 4.65 -58.75 By element: Atomic # 1 Polarization: 46.47 SS G_CDS: 0.29 Total: 46.76 kcal Atomic # 6 Polarization: -68.14 SS G_CDS: 5.07 Total: -63.07 kcal Atomic # 7 Polarization: -72.95 SS G_CDS: -1.48 Total: -74.43 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -1.26 Total: -9.72 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -63.40 4.65 -58.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658128444.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.144 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds