Wall clock time and date at job start Tue Mar 31 2020 11:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47488 * 2 1 4 4 C 1.53002 * 109.47140 * 239.99555 * 2 1 3 5 5 O 1.42902 * 109.46955 * 119.99861 * 2 1 3 6 6 C 1.42901 * 113.99939 * 60.00043 * 5 2 1 7 7 H 1.08998 * 112.85203 * 21.69069 * 6 5 2 8 8 C 1.53782 * 113.61445 * 250.48897 * 6 5 2 9 9 C 1.53775 * 87.08387 * 219.93561 * 8 6 5 10 10 H 1.09002 * 113.61488 * 140.06514 * 9 8 6 11 11 N 1.46497 * 113.61549 * 270.88413 * 9 8 6 12 12 C 1.39687 * 120.00122 * 255.49581 * 11 9 8 13 13 C 1.39331 * 119.95176 * 359.72106 * 12 11 9 14 14 C 1.38473 * 120.42714 * 180.27425 * 13 12 11 15 15 C 1.37688 * 120.32661 * 0.02562 * 14 13 12 16 16 C 1.40761 * 119.88965 * 0.02562 * 15 14 13 17 17 C 1.41399 * 120.20835 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99944 * 24.44889 * 17 16 15 19 19 C 1.39929 * 120.00246 * 204.45441 * 17 16 15 20 20 N 1.30833 * 119.99811 * 17.85932 * 19 17 16 21 21 Si 1.86800 * 120.00198 * 197.87207 * 19 17 16 22 22 H 1.48497 * 109.47348 * 59.99163 * 21 19 17 23 23 H 1.48496 * 109.47387 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46836 * 299.99353 * 21 19 17 25 25 C 1.38276 * 119.95206 * 180.02562 * 12 11 9 26 26 C 1.53783 * 87.08234 * 25.43534 * 9 8 6 27 27 C 1.53002 * 113.61312 * 89.11390 * 26 9 8 28 28 C 1.53001 * 113.61282 * 220.01846 * 26 9 8 29 29 H 1.09001 * 109.46787 * 299.99880 * 1 2 3 30 30 H 1.08999 * 109.47047 * 60.00035 * 1 2 3 31 31 H 1.09000 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47613 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.46561 * 300.00298 * 3 2 1 34 34 H 1.08998 * 109.46885 * 59.99498 * 3 2 1 35 35 H 1.09003 * 109.47450 * 300.00528 * 4 2 1 36 36 H 1.08999 * 109.46816 * 60.00269 * 4 2 1 37 37 H 1.08998 * 109.47168 * 179.97438 * 4 2 1 38 38 H 1.09008 * 113.61044 * 105.38543 * 8 6 5 39 39 H 1.08998 * 113.61497 * 334.48826 * 8 6 5 40 40 H 0.97005 * 120.00262 * 75.50175 * 11 9 8 41 41 H 1.08003 * 119.78722 * 0.25829 * 13 12 11 42 42 H 1.08001 * 119.84315 * 180.02562 * 14 13 12 43 43 H 1.07994 * 120.06024 * 180.02562 * 15 14 13 44 44 H 0.97000 * 119.99724 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.15782 * 359.69634 * 25 12 11 46 46 H 1.08989 * 109.47053 * 60.00349 * 27 26 9 47 47 H 1.09003 * 109.46598 * 180.02562 * 27 26 9 48 48 H 1.09002 * 109.47018 * 299.99737 * 27 26 9 49 49 H 1.08997 * 109.47211 * 59.99940 * 28 26 9 50 50 H 1.09000 * 109.46933 * 179.97438 * 28 26 9 51 51 H 1.08996 * 109.47289 * 299.99679 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 1 1.2997 -2.4605 0.3021 8 6 0.5520 -2.2823 2.3770 9 6 1.3009 -3.5922 2.6735 10 1 1.3934 -3.8112 3.7373 11 7 0.8137 -4.7354 1.8977 12 6 0.0175 -5.7064 2.5096 13 6 -0.3077 -5.5898 3.8594 14 6 -1.0915 -6.5496 4.4774 15 6 -1.5580 -7.6310 3.7640 16 6 -1.2367 -7.7628 2.3999 17 6 -1.7117 -8.8709 1.6610 18 1 -2.6027 -9.3910 1.9804 19 6 -1.0273 -9.2937 0.5161 20 7 0.2095 -8.9164 0.3167 21 14 -1.8795 -10.3964 -0.7277 22 1 -3.0798 -9.7045 -1.2622 23 1 -0.9460 -10.6994 -1.8422 24 1 -2.2903 -11.6617 -0.0678 25 6 -0.4414 -6.7853 1.7765 26 6 2.5475 -2.9242 2.0696 27 6 3.3848 -2.1522 3.0913 28 6 3.3859 -3.8637 1.2005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7210 -1.2494 38 1 -0.4618 -2.4333 2.0059 39 1 0.6029 -1.5568 3.1888 40 1 1.0439 -4.8181 0.9590 41 1 0.0540 -4.7455 4.4275 42 1 -1.3383 -6.4496 5.5240 43 1 -2.1693 -8.3768 4.2501 44 1 0.6841 -9.2098 -0.4768 45 1 -0.1898 -6.8767 0.7302 46 1 3.7262 -2.8335 3.8704 47 1 4.2467 -1.7080 2.5933 48 1 2.7778 -1.3645 3.5377 49 1 2.7797 -4.2301 0.3721 50 1 4.2478 -3.3236 0.8085 51 1 3.7275 -4.7065 1.8013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658128544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:11 Heat of formation + Delta-G solvation = -16.584400 kcal Electronic energy + Delta-G solvation = -27600.789165 eV Core-core repulsion = 24078.983385 eV Total energy + Delta-G solvation = -3521.805779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.49728 -38.18343 -37.18982 -34.07210 -33.15134 -32.45659 -30.32982 -29.42044 -27.83070 -27.78404 -27.44677 -26.77247 -25.20383 -23.84732 -22.28815 -21.05420 -20.08001 -19.93262 -18.10955 -17.18196 -16.71106 -15.84857 -15.48167 -15.15721 -14.98718 -14.72243 -14.38460 -13.92380 -13.78307 -13.50499 -13.27475 -12.85156 -12.76899 -12.56528 -12.52244 -12.24273 -12.17397 -12.09023 -12.00990 -11.95262 -11.92009 -11.74951 -11.59465 -11.37337 -11.13648 -11.02036 -10.93113 -10.66739 -10.50048 -10.42274 -10.25524 -9.87948 -9.60803 -9.39362 -9.22614 -9.18674 -8.71402 -7.28799 -6.71505 -6.14826 -4.29263 2.89750 3.09306 3.12904 3.24877 3.35466 3.65452 3.98600 4.19738 4.52662 4.63442 4.71378 4.73820 4.81545 4.89103 5.00962 5.12525 5.31633 5.36441 5.37576 5.41451 5.55978 5.60812 5.66374 5.68871 5.79007 5.82971 5.85078 5.88129 5.91321 5.97568 6.04710 6.10446 6.11853 6.15109 6.21311 6.27389 6.31918 6.48019 6.53127 6.65158 6.91868 7.13440 7.15942 7.37753 7.41162 7.45843 7.83636 7.98368 8.13821 8.19178 8.51168 8.71731 8.85737 9.03122 9.13972 10.27184 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.003347 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.186229 B = 8363.152750 C = 9124.540455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.359 6.359 6 C 0.073 3.927 7 H 0.086 0.914 8 C -0.175 4.175 9 C 0.153 3.847 10 H 0.093 0.907 11 N -0.739 5.739 12 C 0.217 3.783 13 C -0.297 4.297 14 C -0.066 4.066 15 C -0.258 4.258 16 C 0.139 3.861 17 C -0.466 4.466 18 H 0.075 0.925 19 C 0.079 3.921 20 N -0.793 5.793 21 Si 0.904 3.096 22 H -0.265 1.265 23 H -0.280 1.280 24 H -0.266 1.266 25 C -0.230 4.230 26 C -0.090 4.090 27 C -0.114 4.114 28 C -0.132 4.132 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.389 0.611 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.277 0.723 45 H 0.116 0.884 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.052 0.948 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.613 16.298 -2.711 17.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.066 3.934 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.279 6.279 6 C 0.016 3.984 7 H 0.104 0.896 8 C -0.215 4.215 9 C 0.045 3.955 10 H 0.110 0.890 11 N -0.371 5.371 12 C 0.119 3.881 13 C -0.320 4.320 14 C -0.085 4.085 15 C -0.278 4.278 16 C 0.136 3.864 17 C -0.496 4.496 18 H 0.093 0.907 19 C -0.139 4.139 20 N -0.418 5.418 21 Si 0.728 3.272 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.191 1.191 25 C -0.254 4.254 26 C -0.092 4.092 27 C -0.171 4.171 28 C -0.190 4.190 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.223 0.777 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.134 0.866 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.952 16.436 -2.588 17.671 hybrid contribution -0.443 -0.724 -1.209 1.477 sum 5.509 15.712 -3.797 17.077 Atomic orbital electron populations 1.22462 0.95687 1.02816 1.02350 1.21452 0.93130 0.92988 0.85835 1.21736 1.01717 0.93649 1.02184 1.22457 1.02051 1.01178 0.97880 1.87997 1.73864 1.23834 1.42174 1.23845 0.95288 0.81903 0.97401 0.89643 1.24095 0.99144 0.98908 0.99376 1.21422 0.92082 0.85426 0.96559 0.88957 1.44168 1.57750 1.23699 1.11464 1.17622 0.90545 0.88138 0.91803 1.19915 1.14040 1.04016 0.93995 1.20287 0.96921 0.94419 0.96878 1.20863 1.11242 1.00765 0.94978 1.17302 0.88256 0.90650 0.90157 1.19515 1.10319 1.12199 1.07520 0.90675 1.25861 0.94048 0.95921 0.98049 1.69862 1.08658 1.37783 1.25502 0.86454 0.80167 0.80649 0.79905 1.18961 1.20497 1.19101 1.20700 1.09824 0.95134 0.99747 1.22558 0.95047 0.95056 0.96500 1.21352 0.99139 0.99203 0.97420 1.21637 0.99129 0.98922 0.99286 0.91837 0.92017 0.92015 0.92005 0.91500 0.91947 0.92061 0.91798 0.91833 0.91080 0.89484 0.77688 0.89495 0.89690 0.89459 0.91199 0.86636 0.92681 0.92392 0.92036 0.92750 0.92918 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 8.31 37.16 0.31 -1.47 16 2 C 0.11 1.09 1.12 -90.62 -0.10 0.98 16 3 C -0.14 -1.17 8.84 37.16 0.33 -0.84 16 4 C -0.18 -1.73 8.38 37.16 0.31 -1.42 16 5 O -0.36 -4.44 9.10 -35.23 -0.32 -4.76 16 6 C 0.07 0.94 2.12 -25.91 -0.05 0.88 16 7 H 0.09 1.13 5.45 -51.93 -0.28 0.84 16 8 C -0.18 -2.46 7.15 -25.92 -0.19 -2.65 16 9 C 0.15 2.39 3.51 -67.12 -0.24 2.15 16 10 H 0.09 1.53 6.21 -51.93 -0.32 1.20 16 11 N -0.74 -13.71 4.99 -51.43 -0.26 -13.97 16 12 C 0.22 4.98 6.64 -83.86 -0.56 4.42 16 13 C -0.30 -6.71 9.27 -39.09 -0.36 -7.08 16 14 C -0.07 -1.53 10.01 -39.70 -0.40 -1.93 16 15 C -0.26 -6.54 9.79 -38.83 -0.38 -6.92 16 16 C 0.14 3.79 5.57 -106.85 -0.60 3.19 16 17 C -0.47 -12.58 9.05 -37.75 -0.34 -12.92 16 18 H 0.08 1.96 7.91 -52.48 -0.41 1.55 16 19 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 20 N -0.79 -20.57 10.96 55.55 0.61 -19.96 16 21 Si 0.90 18.90 29.60 -169.99 -5.03 13.87 16 22 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 25 C -0.23 -5.96 8.53 -38.68 -0.33 -6.29 16 26 C -0.09 -1.19 1.34 -153.69 -0.21 -1.40 16 27 C -0.11 -1.35 8.46 37.16 0.31 -1.04 16 28 C -0.13 -1.74 8.58 37.16 0.32 -1.43 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.70 6.98 -51.93 -0.36 0.34 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.64 6.21 -51.93 -0.32 0.32 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 39 H 0.09 1.16 7.65 -51.93 -0.40 0.76 16 40 H 0.39 6.97 7.08 -40.82 -0.29 6.68 16 41 H 0.09 1.78 6.08 -52.48 -0.32 1.46 16 42 H 0.08 1.73 8.06 -52.49 -0.42 1.30 16 43 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 44 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 45 H 0.12 3.08 6.16 -52.48 -0.32 2.76 16 46 H 0.05 0.63 8.14 -51.94 -0.42 0.21 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 0.73 7.19 -51.93 -0.37 0.36 16 49 H 0.05 0.73 6.58 -51.93 -0.34 0.39 16 50 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -27.54 393.39 -10.13 -37.66 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -8.80 Total: 13.06 kcal Atomic # 6 Polarization: -29.58 SS G_CDS: -2.25 Total: -31.84 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.35 Total: -33.93 kcal Atomic # 8 Polarization: -4.44 SS G_CDS: -0.32 Total: -4.76 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.54 -10.13 -37.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658128544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.080 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds