Wall clock time and date at job start Tue Mar 31 2020 11:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47488 * 2 1 4 4 C 1.53002 * 109.47140 * 239.99555 * 2 1 3 5 5 O 1.42902 * 109.46955 * 119.99861 * 2 1 3 6 6 C 1.42901 * 113.99939 * 60.00043 * 5 2 1 7 7 H 1.08998 * 112.85203 * 21.69069 * 6 5 2 8 8 C 1.53782 * 113.61445 * 250.48897 * 6 5 2 9 9 C 1.53775 * 87.08387 * 219.93561 * 8 6 5 10 10 H 1.09002 * 113.61488 * 140.06514 * 9 8 6 11 11 N 1.46497 * 113.61549 * 270.88413 * 9 8 6 12 12 C 1.39687 * 120.00122 * 255.49581 * 11 9 8 13 13 C 1.39331 * 119.95176 * 359.72106 * 12 11 9 14 14 C 1.38473 * 120.42714 * 180.27425 * 13 12 11 15 15 C 1.37688 * 120.32661 * 0.02562 * 14 13 12 16 16 C 1.40761 * 119.88965 * 0.02562 * 15 14 13 17 17 C 1.41399 * 120.20835 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99944 * 24.44889 * 17 16 15 19 19 C 1.39929 * 120.00246 * 204.45441 * 17 16 15 20 20 N 1.30833 * 119.99811 * 17.85932 * 19 17 16 21 21 Si 1.86800 * 120.00198 * 197.87207 * 19 17 16 22 22 H 1.48497 * 109.47348 * 59.99163 * 21 19 17 23 23 H 1.48496 * 109.47387 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46836 * 299.99353 * 21 19 17 25 25 C 1.38276 * 119.95206 * 180.02562 * 12 11 9 26 26 C 1.53783 * 87.08234 * 25.43534 * 9 8 6 27 27 C 1.53002 * 113.61312 * 89.11390 * 26 9 8 28 28 C 1.53001 * 113.61282 * 220.01846 * 26 9 8 29 29 H 1.09001 * 109.46787 * 299.99880 * 1 2 3 30 30 H 1.08999 * 109.47047 * 60.00035 * 1 2 3 31 31 H 1.09000 * 109.46820 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47613 * 180.02562 * 3 2 1 33 33 H 1.09010 * 109.46561 * 300.00298 * 3 2 1 34 34 H 1.08998 * 109.46885 * 59.99498 * 3 2 1 35 35 H 1.09003 * 109.47450 * 300.00528 * 4 2 1 36 36 H 1.08999 * 109.46816 * 60.00269 * 4 2 1 37 37 H 1.08998 * 109.47168 * 179.97438 * 4 2 1 38 38 H 1.09008 * 113.61044 * 105.38543 * 8 6 5 39 39 H 1.08998 * 113.61497 * 334.48826 * 8 6 5 40 40 H 0.97005 * 120.00262 * 75.50175 * 11 9 8 41 41 H 1.08003 * 119.78722 * 0.25829 * 13 12 11 42 42 H 1.08001 * 119.84315 * 180.02562 * 14 13 12 43 43 H 1.07994 * 120.06024 * 180.02562 * 15 14 13 44 44 H 0.97000 * 119.99724 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.15782 * 359.69634 * 25 12 11 46 46 H 1.08989 * 109.47053 * 60.00349 * 27 26 9 47 47 H 1.09003 * 109.46598 * 180.02562 * 27 26 9 48 48 H 1.09002 * 109.47018 * 299.99737 * 27 26 9 49 49 H 1.08997 * 109.47211 * 59.99940 * 28 26 9 50 50 H 1.09000 * 109.46933 * 179.97438 * 28 26 9 51 51 H 1.08996 * 109.47289 * 299.99679 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 1 1.2997 -2.4605 0.3021 8 6 0.5520 -2.2823 2.3770 9 6 1.3009 -3.5922 2.6735 10 1 1.3934 -3.8112 3.7373 11 7 0.8137 -4.7354 1.8977 12 6 0.0175 -5.7064 2.5096 13 6 -0.3077 -5.5898 3.8594 14 6 -1.0915 -6.5496 4.4774 15 6 -1.5580 -7.6310 3.7640 16 6 -1.2367 -7.7628 2.3999 17 6 -1.7117 -8.8709 1.6610 18 1 -2.6027 -9.3910 1.9804 19 6 -1.0273 -9.2937 0.5161 20 7 0.2095 -8.9164 0.3167 21 14 -1.8795 -10.3964 -0.7277 22 1 -3.0798 -9.7045 -1.2622 23 1 -0.9460 -10.6994 -1.8422 24 1 -2.2903 -11.6617 -0.0678 25 6 -0.4414 -6.7853 1.7765 26 6 2.5475 -2.9242 2.0696 27 6 3.3848 -2.1522 3.0913 28 6 3.3859 -3.8637 1.2005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7210 -1.2494 38 1 -0.4618 -2.4333 2.0059 39 1 0.6029 -1.5568 3.1888 40 1 1.0439 -4.8181 0.9590 41 1 0.0540 -4.7455 4.4275 42 1 -1.3383 -6.4496 5.5240 43 1 -2.1693 -8.3768 4.2501 44 1 0.6841 -9.2098 -0.4768 45 1 -0.1898 -6.8767 0.7302 46 1 3.7262 -2.8335 3.8704 47 1 4.2467 -1.7080 2.5933 48 1 2.7778 -1.3645 3.5377 49 1 2.7797 -4.2301 0.3721 50 1 4.2478 -3.3236 0.8085 51 1 3.7275 -4.7065 1.8013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658128544.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:10 Heat of formation + Delta-G solvation = -28.733872 kcal Electronic energy + Delta-G solvation = -27601.316005 eV Core-core repulsion = 24078.983385 eV Total energy + Delta-G solvation = -3522.332620 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.63185 -39.53181 -38.62758 -35.81289 -34.62562 -33.63256 -31.49892 -31.32935 -29.35641 -28.59690 -28.24973 -27.89049 -27.10770 -25.10529 -23.46067 -22.87384 -21.76351 -20.91354 -19.49021 -18.84615 -17.82893 -17.38911 -16.75511 -16.57530 -16.35625 -16.04208 -15.85955 -15.01207 -14.95635 -14.67555 -14.47606 -14.40892 -14.19113 -13.99159 -13.72080 -13.51809 -13.26206 -13.16917 -13.08356 -13.01750 -12.92375 -12.79710 -12.74826 -12.70024 -12.60077 -12.50093 -12.20304 -12.09104 -12.01453 -11.57814 -11.48904 -11.33191 -11.30088 -11.02890 -10.93203 -10.40550 -10.22572 -9.23973 -8.61403 -7.89646 -6.30953 1.10107 1.34261 1.38219 1.49024 1.59600 2.22981 2.67879 2.77001 2.83164 3.42090 3.58366 3.82277 3.90684 3.92787 3.96468 4.03391 4.13575 4.28742 4.31306 4.51196 4.56476 4.62035 4.65828 4.74072 4.78929 4.80251 4.81645 4.89336 4.93233 4.94319 4.95107 4.98509 5.02434 5.05305 5.12371 5.14038 5.19185 5.20803 5.32066 5.33776 5.36946 5.42113 5.47510 5.50215 5.63583 5.97022 6.12312 6.22387 6.28595 6.44332 6.59370 6.95007 7.05395 7.06954 7.25472 8.38675 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.003347 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.186229 B = 8363.152750 C = 9124.540455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.097 3.903 3 C -0.132 4.132 4 C -0.177 4.177 5 O -0.366 6.366 6 C 0.086 3.914 7 H 0.081 0.919 8 C -0.168 4.168 9 C 0.141 3.859 10 H 0.087 0.913 11 N -0.731 5.731 12 C 0.224 3.776 13 C -0.300 4.300 14 C -0.063 4.063 15 C -0.287 4.287 16 C 0.110 3.890 17 C -0.505 4.505 18 H 0.070 0.930 19 C 0.039 3.961 20 N -0.820 5.820 21 Si 0.978 3.022 22 H -0.263 1.263 23 H -0.267 1.267 24 H -0.261 1.261 25 C -0.257 4.257 26 C -0.081 4.081 27 C -0.110 4.110 28 C -0.130 4.130 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.099 0.901 40 H 0.391 0.609 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.088 0.912 44 H 0.285 0.715 45 H 0.099 0.901 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.063 0.937 49 H 0.046 0.954 50 H 0.069 0.931 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.361 18.061 -3.203 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.058 3.942 3 C -0.189 4.189 4 C -0.234 4.234 5 O -0.285 6.285 6 C 0.028 3.972 7 H 0.099 0.901 8 C -0.207 4.207 9 C 0.034 3.966 10 H 0.105 0.895 11 N -0.361 5.361 12 C 0.124 3.876 13 C -0.322 4.322 14 C -0.082 4.082 15 C -0.307 4.307 16 C 0.107 3.893 17 C -0.535 4.535 18 H 0.089 0.911 19 C -0.176 4.176 20 N -0.446 5.446 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.185 1.185 25 C -0.281 4.281 26 C -0.082 4.082 27 C -0.167 4.167 28 C -0.188 4.188 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.225 0.775 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.117 0.883 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.724 18.243 -3.073 19.684 hybrid contribution -0.618 -1.134 -1.003 1.635 sum 6.107 17.109 -4.076 18.618 Atomic orbital electron populations 1.22446 0.95681 1.01904 1.03080 1.21693 0.93236 0.93895 0.85329 1.21741 1.01786 0.92332 1.03079 1.22446 1.02082 1.00568 0.98306 1.87981 1.73924 1.23233 1.43352 1.23601 0.94407 0.82509 0.96729 0.90150 1.24020 0.98445 0.98029 1.00221 1.21626 0.94135 0.84896 0.95964 0.89516 1.44189 1.56603 1.23602 1.11738 1.17707 0.89900 0.87979 0.92056 1.20241 1.13493 1.04570 0.93935 1.20642 0.95803 0.93401 0.98309 1.21020 1.12673 1.02191 0.94840 1.17690 0.89088 0.91316 0.91239 1.19766 1.11015 1.13226 1.09476 0.91143 1.26679 0.94434 0.97240 0.99282 1.69918 1.09764 1.38697 1.26218 0.85332 0.78997 0.78522 0.77289 1.18707 1.19131 1.18545 1.20620 1.11555 0.96606 0.99346 1.22511 0.94318 0.94749 0.96667 1.21340 0.99172 0.99093 0.97099 1.21612 0.99629 0.98677 0.98853 0.92090 0.90356 0.93696 0.91891 0.89652 0.92058 0.93308 0.90190 0.91738 0.92575 0.88312 0.77458 0.86958 0.86523 0.89336 0.90488 0.88292 0.92318 0.91426 0.91806 0.93504 0.91182 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 8.31 71.98 0.60 -2.65 16 2 C 0.10 1.82 1.12 -10.79 -0.01 1.80 16 3 C -0.13 -1.93 8.84 71.98 0.64 -1.29 16 4 C -0.18 -3.10 8.38 71.98 0.60 -2.50 16 5 O -0.37 -8.33 9.10 -148.98 -1.36 -9.68 16 6 C 0.09 2.09 2.12 31.12 0.07 2.16 16 7 H 0.08 2.08 5.45 -2.39 -0.01 2.06 16 8 C -0.17 -4.52 7.15 31.12 0.22 -4.30 16 9 C 0.14 4.25 3.51 45.52 0.16 4.41 16 10 H 0.09 2.74 6.21 -2.39 -0.01 2.72 16 11 N -0.73 -27.22 4.99 -316.64 -1.58 -28.80 16 12 C 0.22 10.41 6.64 38.16 0.25 10.67 16 13 C -0.30 -13.34 9.27 22.59 0.21 -13.14 16 14 C -0.06 -2.89 10.01 22.20 0.22 -2.66 16 15 C -0.29 -14.91 9.79 22.76 0.22 -14.69 16 16 C 0.11 6.19 5.57 -21.31 -0.12 6.07 16 17 C -0.51 -28.42 9.05 23.46 0.21 -28.20 16 18 H 0.07 3.85 7.91 -2.91 -0.02 3.83 16 19 C 0.04 2.00 5.14 85.25 0.44 2.44 16 20 N -0.82 -43.73 10.96 21.82 0.24 -43.50 16 21 Si 0.98 39.32 29.60 68.60 2.03 41.35 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 24 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 25 C -0.26 -13.81 8.53 22.85 0.20 -13.61 16 26 C -0.08 -2.02 1.34 -51.65 -0.07 -2.09 16 27 C -0.11 -2.36 8.46 71.98 0.61 -1.75 16 28 C -0.13 -3.30 8.58 71.98 0.62 -2.68 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.04 0.98 6.98 -2.39 -0.02 0.97 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.05 0.97 6.21 -2.39 -0.01 0.96 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.10 2.45 7.65 -2.39 -0.02 2.43 16 40 H 0.39 14.26 7.08 -92.70 -0.66 13.60 16 41 H 0.11 4.38 6.08 -2.91 -0.02 4.36 16 42 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 44 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 45 H 0.10 5.54 6.16 -2.91 -0.02 5.52 16 46 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.06 1.35 7.19 -2.39 -0.02 1.34 16 49 H 0.05 1.24 6.58 -2.39 -0.02 1.22 16 50 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -60.63 393.39 4.64 -55.98 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: 0.25 Total: 46.68 kcal Atomic # 6 Polarization: -67.09 SS G_CDS: 5.07 Total: -62.03 kcal Atomic # 7 Polarization: -70.95 SS G_CDS: -1.34 Total: -72.30 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: -1.36 Total: -9.68 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -60.63 4.64 -55.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658128544.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.247 kcal (2) G-P(sol) polarization free energy of solvation -60.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds