Wall clock time and date at job start Tue Mar 31 2020 11:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46676 * 2 1 4 4 C 1.52996 * 109.47186 * 240.00027 * 2 1 3 5 5 O 1.42901 * 109.46943 * 119.99695 * 2 1 3 6 6 C 1.42901 * 113.99815 * 60.00250 * 5 2 1 7 7 H 1.09001 * 112.85208 * 18.80474 * 6 5 2 8 8 C 1.53780 * 113.61377 * 247.49318 * 6 5 2 9 9 C 1.53782 * 87.08404 * 270.88723 * 8 6 5 10 10 H 1.09000 * 113.69187 * 220.00847 * 9 8 6 11 11 N 1.46494 * 113.61187 * 89.11480 * 9 8 6 12 12 C 1.39687 * 119.99789 * 107.50970 * 11 9 8 13 13 C 1.39333 * 119.95236 * 359.97438 * 12 11 9 14 14 C 1.38478 * 120.42711 * 180.02562 * 13 12 11 15 15 C 1.37697 * 120.32446 * 359.97438 * 14 13 12 16 16 C 1.40751 * 119.88905 * 0.02562 * 15 14 13 17 17 C 1.41411 * 120.20482 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99774 * 155.02355 * 17 16 15 19 19 C 1.39933 * 119.99977 * 335.02223 * 17 16 15 20 20 N 1.30831 * 119.99897 * 342.55457 * 19 17 16 21 21 Si 1.86803 * 119.99783 * 162.54787 * 19 17 16 22 22 H 1.48497 * 109.47066 * 84.99311 * 21 19 17 23 23 H 1.48500 * 109.47018 * 324.99571 * 21 19 17 24 24 H 1.48497 * 109.46785 * 204.99426 * 21 19 17 25 25 C 1.38280 * 119.95385 * 180.30202 * 12 11 9 26 26 C 1.53780 * 87.07902 * 334.56712 * 9 8 6 27 27 C 1.53005 * 113.61394 * 139.98080 * 26 9 8 28 28 C 1.53003 * 113.61465 * 270.88283 * 26 9 8 29 29 H 1.08992 * 109.47297 * 300.00261 * 1 2 3 30 30 H 1.09001 * 109.46990 * 60.00485 * 1 2 3 31 31 H 1.08995 * 109.46790 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46777 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47015 * 299.99499 * 3 2 1 34 34 H 1.09000 * 109.47131 * 59.99858 * 3 2 1 35 35 H 1.08999 * 109.46779 * 299.99710 * 4 2 1 36 36 H 1.08995 * 109.47256 * 59.99541 * 4 2 1 37 37 H 1.09004 * 109.46657 * 180.02562 * 4 2 1 38 38 H 1.08998 * 113.61299 * 156.33596 * 8 6 5 39 39 H 1.09002 * 113.61199 * 25.43470 * 8 6 5 40 40 H 0.97001 * 120.00442 * 287.49776 * 11 9 8 41 41 H 1.07998 * 119.79069 * 0.05270 * 13 12 11 42 42 H 1.08004 * 119.84025 * 180.02562 * 14 13 12 43 43 H 1.07995 * 120.05544 * 179.97438 * 15 14 13 44 44 H 0.97003 * 119.99416 * 180.02562 * 20 19 17 45 45 H 1.08004 * 120.16234 * 359.97438 * 25 12 11 46 46 H 1.09002 * 109.47003 * 59.99797 * 27 26 9 47 47 H 1.08999 * 109.47015 * 179.97438 * 27 26 9 48 48 H 1.09001 * 109.46939 * 299.99863 * 27 26 9 49 49 H 1.08994 * 109.46850 * 60.00440 * 28 26 9 50 50 H 1.09000 * 109.47085 * 180.02562 * 28 26 9 51 51 H 1.08997 * 109.47009 * 299.99749 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0064 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2645 7 1 1.2524 -2.4452 0.3107 8 6 0.6077 -2.2962 2.4231 9 6 1.8424 -2.5597 3.3012 10 1 1.7182 -3.3930 3.9928 11 7 2.3692 -1.3562 3.9492 12 6 2.1960 -1.1699 5.3227 13 6 1.5216 -2.1291 6.0753 14 6 1.3438 -1.9541 7.4374 15 6 1.8327 -0.8294 8.0635 16 6 2.5161 0.1482 7.3163 17 6 3.0214 1.3056 7.9526 18 1 3.8557 1.8384 7.5208 19 6 2.4404 1.7605 9.1415 20 7 1.2483 1.3468 9.4871 21 14 3.3670 2.9582 10.2353 22 1 3.1353 4.3452 9.7581 23 1 4.8195 2.6533 10.1840 24 1 2.8829 2.8282 11.6331 25 6 2.6883 -0.0305 5.9324 26 6 2.5837 -2.9378 2.0080 27 6 4.0255 -2.4282 1.9567 28 6 2.4620 -4.4185 1.6422 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6768 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1392 37 1 3.1301 -0.7216 -1.2489 38 1 -0.0192 -3.1756 2.2760 39 1 0.0395 -1.4152 2.7218 40 1 2.8385 -0.6887 3.4246 41 1 1.1353 -3.0150 5.5933 42 1 0.8199 -2.7039 8.0117 43 1 1.6912 -0.6971 9.1260 44 1 0.8455 1.6625 10.3112 45 1 3.2070 0.7161 5.3492 46 1 4.5892 -2.8485 2.7896 47 1 4.4854 -2.7330 1.0167 48 1 4.0292 -1.3405 2.0277 49 1 1.4116 -4.6726 1.5011 50 1 3.0100 -4.6111 0.7198 51 1 2.8783 -5.0265 2.4454 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658128545.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:14 Heat of formation + Delta-G solvation = -13.125195 kcal Electronic energy + Delta-G solvation = -27733.159172 eV Core-core repulsion = 24211.503395 eV Total energy + Delta-G solvation = -3521.655777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.56949 -38.04550 -37.12796 -34.10662 -32.94530 -32.37529 -30.32986 -29.63123 -27.86566 -27.62026 -27.42854 -26.63104 -25.12472 -23.88974 -22.33021 -20.72344 -20.35764 -19.88185 -17.97030 -17.29704 -16.65625 -15.49117 -15.40593 -15.32151 -14.95030 -14.80443 -14.26172 -13.99404 -13.76349 -13.52587 -13.31068 -12.87942 -12.67334 -12.62608 -12.43428 -12.28331 -12.17477 -12.02351 -11.99097 -11.93482 -11.81820 -11.72064 -11.64294 -11.36869 -11.11283 -10.96914 -10.93886 -10.60825 -10.51536 -10.34846 -10.22414 -9.67900 -9.64527 -9.28686 -9.19355 -9.08746 -8.56638 -7.28424 -6.62648 -6.05203 -4.22350 2.93020 3.14036 3.18814 3.31440 3.45703 3.47347 4.03268 4.28031 4.58583 4.65187 4.76140 4.78441 4.83525 4.92356 5.05886 5.10944 5.22790 5.31689 5.35165 5.45183 5.57698 5.59371 5.66418 5.69701 5.70588 5.75054 5.86324 5.90049 5.92080 5.94289 5.99439 6.06899 6.14566 6.16265 6.18847 6.34088 6.43024 6.47459 6.56548 6.67487 7.14640 7.20260 7.21567 7.38771 7.44913 7.55500 7.92404 8.02724 8.24099 8.36220 8.63579 8.84524 8.90738 9.09397 9.23314 10.33491 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.015883 B = 0.003349 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.481643 B = 8359.628231 C = 9264.059622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 C -0.139 4.139 4 C -0.176 4.176 5 O -0.345 6.345 6 C 0.076 3.924 7 H 0.069 0.931 8 C -0.185 4.185 9 C 0.161 3.839 10 H 0.086 0.914 11 N -0.732 5.732 12 C 0.229 3.771 13 C -0.302 4.302 14 C -0.076 4.076 15 C -0.201 4.201 16 C 0.142 3.858 17 C -0.466 4.466 18 H 0.074 0.926 19 C 0.078 3.922 20 N -0.794 5.794 21 Si 0.904 3.096 22 H -0.270 1.270 23 H -0.262 1.262 24 H -0.278 1.278 25 C -0.288 4.288 26 C -0.101 4.101 27 C -0.126 4.126 28 C -0.123 4.123 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.395 0.605 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.113 0.887 44 H 0.278 0.722 45 H 0.087 0.913 46 H 0.055 0.945 47 H 0.045 0.955 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.057 0.943 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -5.945 -18.488 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.069 3.931 3 C -0.196 4.196 4 C -0.233 4.233 5 O -0.264 6.264 6 C 0.018 3.982 7 H 0.087 0.913 8 C -0.224 4.224 9 C 0.053 3.947 10 H 0.104 0.896 11 N -0.364 5.364 12 C 0.130 3.870 13 C -0.325 4.325 14 C -0.095 4.095 15 C -0.221 4.221 16 C 0.139 3.861 17 C -0.496 4.496 18 H 0.092 0.908 19 C -0.139 4.139 20 N -0.420 5.420 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.186 1.186 24 H -0.203 1.203 25 C -0.311 4.311 26 C -0.103 4.103 27 C -0.183 4.183 28 C -0.181 4.181 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.231 0.769 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.131 0.869 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.340 -5.957 -18.165 19.120 hybrid contribution 0.124 0.703 0.095 0.721 sum -0.217 -5.254 -18.070 18.820 Atomic orbital electron populations 1.22452 0.95743 1.02416 1.02621 1.21478 0.93113 0.93107 0.85391 1.21758 1.01901 0.93414 1.02506 1.22447 1.02124 1.00856 0.97908 1.87949 1.73173 1.22861 1.42413 1.23052 0.95434 0.82909 0.96813 0.91302 1.24094 0.98177 1.02216 0.97953 1.21464 0.91879 0.89594 0.91803 0.89598 1.44139 1.64445 1.22263 1.05523 1.17481 0.93903 0.93737 0.81855 1.19885 1.16472 1.01549 0.94611 1.20431 0.98564 0.96810 0.93674 1.21143 1.06818 0.94400 0.99767 1.17317 0.87762 0.91268 0.89714 1.19519 1.14991 1.09349 1.05740 0.90774 1.25867 0.94009 0.96463 0.97561 1.69868 1.12305 1.37832 1.21969 0.86413 0.81096 0.80578 0.79080 1.19573 1.18601 1.20274 1.20395 1.16609 0.99224 0.94920 1.22562 0.95856 0.94798 0.97063 1.21466 0.94156 1.02116 1.00590 1.21523 1.01746 0.93323 1.01491 0.91518 0.92060 0.92353 0.91854 0.91460 0.91483 0.92289 0.91860 0.91800 0.89708 0.90372 0.76928 0.89681 0.89858 0.86930 0.91161 0.89451 0.92601 0.93567 0.91370 0.92389 0.92438 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 8.38 37.16 0.31 -1.45 16 2 C 0.11 1.15 1.11 -90.62 -0.10 1.05 16 3 C -0.14 -1.40 8.84 37.16 0.33 -1.07 16 4 C -0.18 -1.55 8.38 37.16 0.31 -1.23 16 5 O -0.35 -4.51 7.21 -35.23 -0.25 -4.76 16 6 C 0.08 0.91 2.30 -25.92 -0.06 0.85 16 7 H 0.07 0.73 5.50 -51.93 -0.29 0.44 16 8 C -0.18 -2.52 7.36 -25.92 -0.19 -2.71 16 9 C 0.16 2.49 3.58 -67.12 -0.24 2.25 16 10 H 0.09 1.41 6.08 -51.93 -0.32 1.09 16 11 N -0.73 -13.78 4.84 -51.43 -0.25 -14.03 16 12 C 0.23 5.32 6.64 -83.86 -0.56 4.76 16 13 C -0.30 -7.07 9.27 -39.09 -0.36 -7.43 16 14 C -0.08 -1.87 10.02 -39.69 -0.40 -2.27 16 15 C -0.20 -5.49 8.69 -38.83 -0.34 -5.82 16 16 C 0.14 3.98 5.57 -106.85 -0.59 3.38 16 17 C -0.47 -12.93 9.05 -37.74 -0.34 -13.27 16 18 H 0.07 1.98 7.90 -52.49 -0.41 1.57 16 19 C 0.08 2.04 5.14 -17.34 -0.09 1.96 16 20 N -0.79 -21.38 10.96 55.55 0.61 -20.77 16 21 Si 0.90 19.34 29.59 -169.99 -5.03 14.31 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 25 C -0.29 -7.42 9.63 -38.68 -0.37 -7.80 16 26 C -0.10 -1.25 1.34 -153.69 -0.21 -1.46 16 27 C -0.13 -1.62 8.44 37.16 0.31 -1.30 16 28 C -0.12 -1.22 9.07 37.16 0.34 -0.88 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.58 7.02 -51.93 -0.36 0.21 16 32 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.50 6.24 -51.93 -0.32 0.18 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.99 7.65 -51.93 -0.40 0.59 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.39 7.33 6.10 -40.82 -0.25 7.08 16 41 H 0.09 1.80 6.03 -52.49 -0.32 1.48 16 42 H 0.08 1.85 8.06 -52.48 -0.42 1.43 16 43 H 0.11 3.17 6.17 -52.49 -0.32 2.85 16 44 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 45 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.97 5.68 -51.93 -0.29 0.67 16 49 H 0.06 0.52 7.34 -51.93 -0.38 0.14 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -28.81 390.59 -10.01 -38.82 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -8.72 Total: 12.98 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: -2.25 Total: -32.44 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: 0.36 Total: -34.80 kcal Atomic # 8 Polarization: -4.51 SS G_CDS: -0.25 Total: -4.76 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.81 -10.01 -38.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658128545.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.693 kcal (2) G-P(sol) polarization free energy of solvation -28.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds