Wall clock time and date at job start Tue Mar 31 2020 11:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99383 * 2 1 4 4 C 1.53001 * 109.46582 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47529 * 67.69326 * 4 3 2 6 6 C 1.46898 * 110.99722 * 57.22948 * 5 4 3 7 7 C 1.50701 * 109.47457 * 66.04583 * 6 5 4 8 8 H 1.08004 * 119.99686 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00687 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99380 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 120.00473 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47259 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47038 * 119.99806 * 11 9 7 14 14 H 1.48503 * 109.47439 * 240.00230 * 11 9 7 15 15 C 1.46900 * 110.99985 * 293.27923 * 5 4 3 16 16 C 1.50701 * 109.46792 * 299.49362 * 15 5 4 17 17 C 1.32570 * 119.99941 * 124.72712 * 16 15 5 18 18 C 1.47815 * 119.99570 * 180.27386 * 17 16 15 19 19 C 1.39552 * 120.14273 * 359.97438 * 18 17 16 20 20 C 1.37950 * 119.85283 * 180.02562 * 19 18 17 21 21 C 1.50702 * 119.93001 * 179.97438 * 20 19 18 22 22 C 1.38373 * 120.14450 * 359.97438 * 20 19 18 23 23 C 1.50697 * 119.85695 * 180.02562 * 22 20 19 24 24 C 1.38323 * 120.28323 * 0.02562 * 22 20 19 25 25 C 1.37996 * 120.13996 * 359.67801 * 24 22 20 26 26 C 1.50709 * 120.06874 * 180.31932 * 25 24 22 27 27 H 1.09008 * 109.47204 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47415 * 300.00302 * 1 2 3 29 29 H 1.08997 * 109.47172 * 60.00297 * 1 2 3 30 30 H 1.08994 * 109.47512 * 59.99955 * 3 2 1 31 31 H 1.08996 * 109.47106 * 299.99356 * 3 2 1 32 32 H 1.09000 * 109.47096 * 307.69298 * 4 3 2 33 33 H 1.09006 * 109.47061 * 187.69266 * 4 3 2 34 34 H 1.08999 * 109.47607 * 186.04812 * 6 5 4 35 35 H 1.09005 * 109.47327 * 306.04744 * 6 5 4 36 36 H 0.97000 * 119.99978 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.46939 * 179.49668 * 15 5 4 38 38 H 1.09001 * 109.46903 * 59.49074 * 15 5 4 39 39 H 1.08005 * 119.99891 * 304.99987 * 16 15 5 40 40 H 1.07995 * 119.99592 * 0.27303 * 17 16 15 41 41 H 1.07997 * 120.07668 * 0.02831 * 19 18 17 42 42 H 1.09000 * 109.47201 * 89.99513 * 21 20 19 43 43 H 1.09002 * 109.46997 * 209.99866 * 21 20 19 44 44 H 1.08999 * 109.46828 * 329.99729 * 21 20 19 45 45 H 1.08997 * 109.47295 * 90.00328 * 23 22 20 46 46 H 1.09008 * 109.46959 * 210.00045 * 23 22 20 47 47 H 1.08997 * 109.47090 * 329.99637 * 23 22 20 48 48 H 1.08003 * 119.92784 * 180.02562 * 24 22 20 49 49 H 1.08990 * 109.46899 * 270.27480 * 26 25 24 50 50 H 1.09001 * 109.46931 * 30.27790 * 26 25 24 51 51 H 1.08997 * 109.46694 * 150.27705 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9815 0.6223 -1.2823 6 6 3.5203 1.4460 -2.4077 7 6 4.1937 2.7931 -2.3535 8 1 4.8946 3.0150 -1.5623 9 6 3.9159 3.7420 -3.3145 10 7 3.0628 3.4716 -4.2782 11 14 4.7512 5.4114 -3.2477 12 1 5.6603 5.4636 -2.0746 13 1 5.5355 5.6226 -4.4908 14 1 3.7223 6.4752 -3.1248 15 6 3.5348 -0.7692 -1.4305 16 6 4.1163 -1.6046 -0.3192 17 6 3.3168 -2.3155 0.4637 18 6 3.8868 -3.1300 1.5575 19 6 5.2661 -3.1533 1.7684 20 6 5.7916 -3.9160 2.7907 21 6 7.2809 -3.9429 3.0196 22 6 4.9544 -4.6565 3.6064 23 6 5.5354 -5.4869 4.7216 24 6 3.5864 -4.6376 3.4026 25 6 3.0475 -3.8740 2.3873 26 6 1.5562 -3.8490 2.1712 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8482 0.5296 0.8123 33 1 3.9780 2.1714 0.1369 34 1 3.7711 0.9520 -3.3464 35 1 2.4401 1.5770 -2.3434 36 1 2.8670 4.1393 -4.9540 37 1 3.8710 -1.1583 -2.3916 38 1 2.4465 -0.8084 -1.3832 39 1 5.1841 -1.6206 -0.1578 40 1 2.2491 -2.2994 0.3022 41 1 5.9206 -2.5755 1.1328 42 1 7.5561 -3.1495 3.7146 43 1 7.5668 -4.9079 3.4381 44 1 7.7970 -3.7907 2.0717 45 1 5.5912 -4.8873 5.6301 46 1 4.8997 -6.3548 4.8975 47 1 6.5355 -5.8196 4.4438 48 1 2.9381 -5.2175 4.0430 49 1 1.2759 -4.6441 1.4804 50 1 1.0485 -3.9996 3.1239 51 1 1.2659 -2.8853 1.7531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658348306.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:42 Heat of formation + Delta-G solvation = -11.039833 kcal Electronic energy + Delta-G solvation = -26995.666019 eV Core-core repulsion = 23474.100670 eV Total energy + Delta-G solvation = -3521.565349 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.75742 -38.37370 -36.12006 -35.01968 -33.46408 -32.50272 -31.32109 -29.34749 -28.96221 -27.88772 -26.33125 -25.95150 -24.91086 -23.53319 -22.97632 -22.36824 -20.17355 -19.21303 -18.79726 -16.30854 -16.19874 -16.03077 -15.86662 -15.60648 -14.83268 -14.58292 -14.47437 -14.36286 -13.97848 -13.83818 -13.54157 -13.31402 -13.26047 -12.92967 -12.76354 -12.68386 -12.23251 -12.07563 -11.89145 -11.71541 -11.64799 -11.58721 -11.34357 -11.27659 -11.14286 -11.01549 -10.84106 -10.67691 -10.56043 -10.47495 -10.26175 -9.81584 -9.61483 -9.24651 -8.96181 -8.50924 -8.42826 -7.63387 -7.07663 -6.03358 -4.04489 1.10897 1.45209 2.81655 3.29600 3.37592 3.42209 3.96531 4.20048 4.42761 4.75198 4.76091 4.91444 4.95585 5.06644 5.16838 5.24443 5.32815 5.37493 5.45783 5.48815 5.54300 5.56485 5.58428 5.59514 5.65750 5.72407 5.74448 5.82035 5.83763 5.85328 5.92005 5.96209 5.97200 6.04603 6.23033 6.27771 6.36093 6.40004 6.42719 6.63853 6.67435 6.71517 6.75088 7.08192 7.15199 7.20943 7.39039 7.40277 7.57850 7.82353 8.12506 8.25611 8.58322 9.04167 9.59935 11.07209 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017255 B = 0.002995 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.341083 B = 9347.588761 C =10420.024557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.379 6.379 3 C 0.020 3.980 4 C 0.071 3.929 5 N -0.529 5.529 6 C 0.188 3.812 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.286 1.286 15 C 0.068 3.932 16 C -0.102 4.102 17 C -0.139 4.139 18 C -0.037 4.037 19 C -0.114 4.114 20 C -0.091 4.091 21 C -0.116 4.116 22 C -0.098 4.098 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.085 4.085 26 C -0.115 4.115 27 H 0.076 0.924 28 H 0.033 0.967 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.028 0.972 35 H -0.001 1.001 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.116 0.884 49 H 0.067 0.933 50 H 0.060 0.940 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.755 -15.948 15.458 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.298 6.298 3 C -0.058 4.058 4 C -0.058 4.058 5 N -0.252 5.252 6 C 0.063 3.937 7 C -0.544 4.544 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.210 1.210 14 H -0.212 1.212 15 C -0.060 4.060 16 C -0.120 4.120 17 C -0.158 4.158 18 C -0.037 4.037 19 C -0.132 4.132 20 C -0.091 4.091 21 C -0.172 4.172 22 C -0.098 4.098 23 C -0.170 4.170 24 C -0.136 4.136 25 C -0.085 4.085 26 C -0.171 4.171 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.046 0.954 35 H 0.017 0.983 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.124 0.876 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.086 0.914 48 H 0.135 0.865 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.191 -16.022 15.274 22.136 hybrid contribution -0.775 1.309 -0.108 1.525 sum -0.966 -14.714 15.166 21.152 Atomic orbital electron populations 1.22665 0.83012 1.01670 0.99627 1.87988 1.18221 1.28630 1.94951 1.23496 0.97197 0.84403 1.00667 1.22122 0.89549 1.01050 0.93058 1.62302 1.59100 1.00608 1.03161 1.19802 0.94152 0.91926 0.87855 1.21218 1.24760 0.97352 1.11047 0.91887 1.24981 0.95402 0.98813 0.95424 1.69969 1.34716 1.34776 1.14371 0.86487 0.79324 0.83847 0.78042 1.19648 1.21038 1.21210 1.21427 0.99230 0.89471 0.95834 1.23417 0.99122 0.94133 0.95314 1.21649 0.99705 0.99134 0.95266 1.19015 0.92551 0.96501 0.95602 1.21208 0.94651 0.99316 0.97985 1.19620 0.95651 0.97798 0.95986 1.20842 0.91803 1.02215 1.02369 1.19683 0.93339 0.99116 0.97700 1.20816 1.01052 0.98678 0.96464 1.20743 0.94237 1.00160 0.98415 1.19927 0.95762 0.97178 0.95632 1.20800 0.91486 1.03025 1.01812 0.90507 0.94848 0.94336 0.94490 0.91252 0.91884 0.89160 0.95381 0.98328 0.93039 0.91424 0.91680 0.87584 0.85876 0.85695 0.91340 0.91454 0.91636 0.91510 0.91997 0.91374 0.86550 0.91475 0.92105 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -6.26 5.98 -35.23 -0.21 -6.47 16 3 C 0.02 0.36 5.75 37.16 0.21 0.58 16 4 C 0.07 1.37 5.47 -3.82 -0.02 1.35 16 5 N -0.53 -11.29 4.74 -237.51 -1.13 -12.42 16 6 C 0.19 4.77 4.44 -4.98 -0.02 4.75 16 7 C -0.51 -13.85 8.55 -34.44 -0.29 -14.15 16 8 H 0.06 1.72 7.10 -52.48 -0.37 1.35 16 9 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 11 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 12 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 C 0.07 1.26 4.93 -4.98 -0.02 1.23 16 16 C -0.10 -1.64 7.63 -36.21 -0.28 -1.91 16 17 C -0.14 -2.06 8.36 -37.57 -0.31 -2.37 16 18 C -0.04 -0.52 5.87 -105.02 -0.62 -1.13 16 19 C -0.11 -1.54 9.05 -39.20 -0.35 -1.89 16 20 C -0.09 -1.09 5.87 -104.68 -0.61 -1.70 16 21 C -0.12 -1.08 9.60 36.01 0.35 -0.74 16 22 C -0.10 -1.11 5.89 -104.54 -0.62 -1.72 16 23 C -0.11 -0.93 9.60 36.00 0.35 -0.59 16 24 C -0.12 -1.36 9.34 -39.64 -0.37 -1.73 16 25 C -0.08 -1.08 5.91 -104.23 -0.62 -1.69 16 26 C -0.11 -1.21 9.52 36.01 0.34 -0.87 16 27 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.46 5.83 -51.93 -0.30 1.16 16 32 H 0.06 1.15 6.88 -51.93 -0.36 0.79 16 33 H 0.09 1.83 6.94 -51.93 -0.36 1.47 16 34 H 0.03 0.78 8.01 -51.93 -0.42 0.36 16 35 H 0.00 -0.02 5.77 -51.93 -0.30 -0.32 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.07 1.28 8.04 -51.93 -0.42 0.87 16 38 H 0.07 1.24 4.92 -51.93 -0.26 0.98 16 39 H 0.11 1.68 6.04 -52.48 -0.32 1.36 16 40 H 0.12 1.82 5.29 -52.49 -0.28 1.54 16 41 H 0.13 1.64 6.17 -52.49 -0.32 1.32 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.53 5.93 -51.93 -0.31 0.22 16 44 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.44 8.08 -51.92 -0.42 0.02 16 47 H 0.07 0.50 5.93 -51.93 -0.31 0.19 16 48 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 51 H 0.07 0.84 6.32 -51.93 -0.33 0.51 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -29.72 393.87 -9.98 -39.70 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.42 Total: 2.14 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: -1.88 Total: -19.67 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.39 Total: -38.00 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.21 Total: -6.47 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -29.72 -9.98 -39.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658348306.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.662 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds