Wall clock time and date at job start Tue Mar 31 2020 11:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99383 * 2 1 4 4 C 1.53001 * 109.46582 * 180.02562 * 3 2 1 5 5 N 1.46904 * 109.47529 * 67.69326 * 4 3 2 6 6 C 1.46898 * 110.99722 * 57.22948 * 5 4 3 7 7 C 1.50701 * 109.47457 * 66.04583 * 6 5 4 8 8 H 1.08004 * 119.99686 * 0.02562 * 7 6 5 9 9 C 1.37878 * 120.00687 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99380 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 120.00473 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47259 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47038 * 119.99806 * 11 9 7 14 14 H 1.48503 * 109.47439 * 240.00230 * 11 9 7 15 15 C 1.46900 * 110.99985 * 293.27923 * 5 4 3 16 16 C 1.50701 * 109.46792 * 299.49362 * 15 5 4 17 17 C 1.32570 * 119.99941 * 124.72712 * 16 15 5 18 18 C 1.47815 * 119.99570 * 180.27386 * 17 16 15 19 19 C 1.39552 * 120.14273 * 359.97438 * 18 17 16 20 20 C 1.37950 * 119.85283 * 180.02562 * 19 18 17 21 21 C 1.50702 * 119.93001 * 179.97438 * 20 19 18 22 22 C 1.38373 * 120.14450 * 359.97438 * 20 19 18 23 23 C 1.50697 * 119.85695 * 180.02562 * 22 20 19 24 24 C 1.38323 * 120.28323 * 0.02562 * 22 20 19 25 25 C 1.37996 * 120.13996 * 359.67801 * 24 22 20 26 26 C 1.50709 * 120.06874 * 180.31932 * 25 24 22 27 27 H 1.09008 * 109.47204 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47415 * 300.00302 * 1 2 3 29 29 H 1.08997 * 109.47172 * 60.00297 * 1 2 3 30 30 H 1.08994 * 109.47512 * 59.99955 * 3 2 1 31 31 H 1.08996 * 109.47106 * 299.99356 * 3 2 1 32 32 H 1.09000 * 109.47096 * 307.69298 * 4 3 2 33 33 H 1.09006 * 109.47061 * 187.69266 * 4 3 2 34 34 H 1.08999 * 109.47607 * 186.04812 * 6 5 4 35 35 H 1.09005 * 109.47327 * 306.04744 * 6 5 4 36 36 H 0.97000 * 119.99978 * 179.97438 * 10 9 7 37 37 H 1.08997 * 109.46939 * 179.49668 * 15 5 4 38 38 H 1.09001 * 109.46903 * 59.49074 * 15 5 4 39 39 H 1.08005 * 119.99891 * 304.99987 * 16 15 5 40 40 H 1.07995 * 119.99592 * 0.27303 * 17 16 15 41 41 H 1.07997 * 120.07668 * 0.02831 * 19 18 17 42 42 H 1.09000 * 109.47201 * 89.99513 * 21 20 19 43 43 H 1.09002 * 109.46997 * 209.99866 * 21 20 19 44 44 H 1.08999 * 109.46828 * 329.99729 * 21 20 19 45 45 H 1.08997 * 109.47295 * 90.00328 * 23 22 20 46 46 H 1.09008 * 109.46959 * 210.00045 * 23 22 20 47 47 H 1.08997 * 109.47090 * 329.99637 * 23 22 20 48 48 H 1.08003 * 119.92784 * 180.02562 * 24 22 20 49 49 H 1.08990 * 109.46899 * 270.27480 * 26 25 24 50 50 H 1.09001 * 109.46931 * 30.27790 * 26 25 24 51 51 H 1.08997 * 109.46694 * 150.27705 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9815 0.6223 -1.2823 6 6 3.5203 1.4460 -2.4077 7 6 4.1937 2.7931 -2.3535 8 1 4.8946 3.0150 -1.5623 9 6 3.9159 3.7420 -3.3145 10 7 3.0628 3.4716 -4.2782 11 14 4.7512 5.4114 -3.2477 12 1 5.6603 5.4636 -2.0746 13 1 5.5355 5.6226 -4.4908 14 1 3.7223 6.4752 -3.1248 15 6 3.5348 -0.7692 -1.4305 16 6 4.1163 -1.6046 -0.3192 17 6 3.3168 -2.3155 0.4637 18 6 3.8868 -3.1300 1.5575 19 6 5.2661 -3.1533 1.7684 20 6 5.7916 -3.9160 2.7907 21 6 7.2809 -3.9429 3.0196 22 6 4.9544 -4.6565 3.6064 23 6 5.5354 -5.4869 4.7216 24 6 3.5864 -4.6376 3.4026 25 6 3.0475 -3.8740 2.3873 26 6 1.5562 -3.8490 2.1712 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8482 0.5296 0.8123 33 1 3.9780 2.1714 0.1369 34 1 3.7711 0.9520 -3.3464 35 1 2.4401 1.5770 -2.3434 36 1 2.8670 4.1393 -4.9540 37 1 3.8710 -1.1583 -2.3916 38 1 2.4465 -0.8084 -1.3832 39 1 5.1841 -1.6206 -0.1578 40 1 2.2491 -2.2994 0.3022 41 1 5.9206 -2.5755 1.1328 42 1 7.5561 -3.1495 3.7146 43 1 7.5668 -4.9079 3.4381 44 1 7.7970 -3.7907 2.0717 45 1 5.5912 -4.8873 5.6301 46 1 4.8997 -6.3548 4.8975 47 1 6.5355 -5.8196 4.4438 48 1 2.9381 -5.2175 4.0430 49 1 1.2759 -4.6441 1.4804 50 1 1.0485 -3.9996 3.1239 51 1 1.2659 -2.8853 1.7531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658348306.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:42 Heat of formation + Delta-G solvation = -26.121659 kcal Electronic energy + Delta-G solvation = -26996.320016 eV Core-core repulsion = 23474.100670 eV Total energy + Delta-G solvation = -3522.219346 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69953 -39.85680 -37.54492 -36.13319 -34.83821 -34.16767 -32.41177 -30.58647 -30.10857 -29.34411 -27.70404 -27.10826 -25.95379 -24.84335 -24.74582 -23.39856 -21.58297 -20.52827 -19.90924 -18.37175 -17.60072 -17.46964 -16.90813 -16.71493 -16.53880 -15.86380 -15.65206 -15.44393 -15.26208 -15.23284 -14.64871 -14.44908 -14.26218 -14.07938 -13.67003 -13.60394 -13.50609 -13.22988 -13.14705 -12.97686 -12.91025 -12.82019 -12.71135 -12.64961 -12.53229 -12.38823 -12.38102 -12.21884 -11.91356 -11.82710 -11.62925 -11.45027 -11.16319 -10.72755 -10.61276 -10.35119 -9.43676 -8.82738 -8.69217 -8.17932 -6.27527 0.08513 0.52493 1.40419 1.41967 1.54847 1.69518 2.41450 2.87777 2.98099 3.14418 3.51226 3.88707 3.89394 4.01308 4.07152 4.22039 4.25232 4.33462 4.38433 4.41235 4.43653 4.53591 4.58473 4.62143 4.70682 4.71444 4.75545 4.78131 4.82176 4.83606 4.86785 4.89981 4.94003 5.00419 5.07498 5.10575 5.15749 5.20463 5.29598 5.34585 5.38852 5.43489 5.51258 5.65491 5.70888 5.80304 5.91792 6.02781 6.11952 6.22493 6.23714 6.43979 6.70182 6.89731 7.42075 8.92697 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.017255 B = 0.002995 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.341083 B = 9347.588761 C =10420.024557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.386 6.386 3 C 0.032 3.968 4 C 0.075 3.925 5 N -0.537 5.537 6 C 0.205 3.795 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.003 3.997 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.263 1.263 13 H -0.281 1.281 14 H -0.279 1.279 15 C 0.076 3.924 16 C -0.124 4.124 17 C -0.110 4.110 18 C -0.068 4.068 19 C -0.127 4.127 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.097 4.097 23 C -0.113 4.113 24 C -0.125 4.125 25 C -0.090 4.090 26 C -0.113 4.113 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.026 0.974 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.078 0.922 33 H 0.077 0.923 34 H -0.006 1.006 35 H -0.020 1.020 36 H 0.263 0.737 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.140 0.860 49 H 0.075 0.925 50 H 0.079 0.921 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.597 -17.082 18.271 25.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.306 6.306 3 C -0.046 4.046 4 C -0.054 4.054 5 N -0.260 5.260 6 C 0.079 3.921 7 C -0.556 4.556 8 H 0.080 0.920 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.187 1.187 13 H -0.207 1.207 14 H -0.205 1.205 15 C -0.051 4.051 16 C -0.142 4.142 17 C -0.128 4.128 18 C -0.068 4.068 19 C -0.145 4.145 20 C -0.104 4.104 21 C -0.171 4.171 22 C -0.097 4.097 23 C -0.169 4.169 24 C -0.143 4.143 25 C -0.091 4.091 26 C -0.170 4.170 27 H 0.121 0.879 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.013 0.987 35 H -0.002 1.002 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.124 0.876 40 H 0.142 0.858 41 H 0.137 0.863 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.158 0.842 49 H 0.094 0.906 50 H 0.097 0.903 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.034 -17.173 18.105 24.954 hybrid contribution -0.875 1.495 -0.871 1.939 sum -0.910 -15.678 17.235 23.317 Atomic orbital electron populations 1.22872 0.81097 1.03525 0.99898 1.87951 1.20209 1.27439 1.94962 1.23190 0.96368 0.85107 0.99917 1.22057 0.90556 1.00511 0.92229 1.62196 1.59477 1.01530 1.02754 1.19423 0.92829 0.91783 0.88051 1.21489 1.24724 0.98297 1.11051 0.91975 1.25859 0.95950 1.02777 0.94929 1.70095 1.36078 1.36200 1.15147 0.85393 0.78382 0.78955 0.78256 1.18683 1.20680 1.20459 1.21325 0.99112 0.88202 0.96478 1.23068 0.99216 0.95953 0.95964 1.21694 0.99485 0.97358 0.94309 1.19066 0.93192 0.98111 0.96409 1.21329 0.94592 0.99853 0.98678 1.19950 0.97224 0.97550 0.95648 1.20883 0.90086 1.03473 1.02650 1.20134 0.93400 0.98348 0.97821 1.20888 1.01731 0.98769 0.95544 1.21081 0.94872 1.00036 0.98307 1.20223 0.96701 0.96691 0.95438 1.20826 0.90314 1.02834 1.03002 0.87906 0.93095 0.95493 0.92303 0.94760 0.90373 0.90429 0.98744 1.00241 0.92827 0.92839 0.91974 0.87581 0.85758 0.86325 0.90731 0.89626 0.91762 0.90502 0.90624 0.90320 0.84175 0.90631 0.90252 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 16 2 O -0.39 -12.71 5.98 -148.98 -0.89 -13.60 16 3 C 0.03 1.18 5.75 71.98 0.41 1.60 16 4 C 0.07 2.95 5.47 86.30 0.47 3.43 16 5 N -0.54 -23.94 4.74 -905.34 -4.29 -28.22 16 6 C 0.21 11.02 4.44 85.56 0.38 11.40 16 7 C -0.52 -29.25 8.55 25.60 0.22 -29.03 16 8 H 0.06 3.46 7.10 -2.91 -0.02 3.43 16 9 C 0.00 0.15 5.46 84.66 0.46 0.61 16 10 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 11 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 12 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 15 C 0.08 2.96 4.93 85.56 0.42 3.38 16 16 C -0.12 -4.09 7.63 24.53 0.19 -3.91 16 17 C -0.11 -3.25 8.36 23.65 0.20 -3.05 16 18 C -0.07 -1.86 5.87 -20.12 -0.12 -1.98 16 19 C -0.13 -3.37 9.05 22.52 0.20 -3.17 16 20 C -0.10 -2.32 5.87 -19.90 -0.12 -2.44 16 21 C -0.11 -1.92 9.60 71.24 0.68 -1.24 16 22 C -0.10 -1.94 5.89 -19.81 -0.12 -2.05 16 23 C -0.11 -1.46 9.60 71.23 0.68 -0.78 16 24 C -0.13 -2.55 9.34 22.23 0.21 -2.35 16 25 C -0.09 -2.13 5.91 -19.61 -0.12 -2.25 16 26 C -0.11 -2.15 9.52 71.24 0.68 -1.47 16 27 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.03 1.51 5.83 -2.39 -0.01 1.50 16 32 H 0.08 2.85 6.88 -2.39 -0.02 2.83 16 33 H 0.08 3.22 6.94 -2.38 -0.02 3.20 16 34 H -0.01 -0.33 8.01 -2.39 -0.02 -0.35 16 35 H -0.02 -1.13 5.77 -2.38 -0.01 -1.15 16 36 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.05 2.18 8.04 -2.39 -0.02 2.16 16 38 H 0.06 2.46 4.92 -2.39 -0.01 2.45 16 39 H 0.11 3.49 6.04 -2.91 -0.02 3.47 16 40 H 0.12 3.61 5.29 -2.91 -0.02 3.59 16 41 H 0.12 3.19 6.17 -2.91 -0.02 3.17 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.10 5.93 -2.39 -0.01 1.08 16 44 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 45 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.07 0.79 8.08 -2.38 -0.02 0.77 16 47 H 0.08 0.86 5.93 -2.39 -0.01 0.85 16 48 H 0.14 2.13 8.06 -2.91 -0.02 2.10 16 49 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 51 H 0.07 1.36 6.32 -2.39 -0.02 1.35 16 Total: -1.00 -65.65 393.87 4.03 -61.62 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.91 Total: 21.29 kcal Atomic # 6 Polarization: -37.46 SS G_CDS: 5.99 Total: -31.47 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -4.00 Total: -84.24 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.89 Total: -13.60 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -65.65 4.03 -61.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658348306.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.501 kcal (2) G-P(sol) polarization free energy of solvation -65.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds