Wall clock time and date at job start Tue Mar 31 2020 11:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47109 * 2 1 4 4 C 1.53000 * 109.47133 * 240.00000 * 2 1 3 5 5 O 1.42900 * 109.47262 * 119.99499 * 2 1 3 6 6 C 1.42907 * 113.99463 * 60.00293 * 5 2 1 7 7 H 1.08998 * 112.90835 * 341.24884 * 6 5 2 8 8 C 1.53776 * 113.61316 * 112.50561 * 6 5 2 9 9 C 1.53781 * 87.08025 * 139.97560 * 8 6 5 10 10 H 1.09002 * 113.69203 * 219.99975 * 9 8 6 11 11 N 1.46500 * 113.61272 * 89.11779 * 9 8 6 12 12 C 1.38857 * 120.00230 * 107.49978 * 11 9 8 13 13 C 1.39577 * 119.83989 * 179.97438 * 12 11 9 14 14 C 1.36335 * 120.15971 * 179.72351 * 13 12 11 15 15 C 1.40896 * 119.83477 * 0.25563 * 14 13 12 16 16 C 1.41133 * 120.15118 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99796 * 204.61222 * 16 15 14 18 18 C 1.39865 * 120.00502 * 24.61077 * 16 15 14 19 19 N 1.30900 * 119.99449 * 17.96605 * 18 16 15 20 20 Si 1.86792 * 120.00371 * 197.96185 * 18 16 15 21 21 H 1.48497 * 109.47238 * 90.00268 * 20 18 16 22 22 H 1.48502 * 109.47249 * 210.00373 * 20 18 16 23 23 H 1.48501 * 109.47144 * 330.00316 * 20 18 16 24 24 C 1.40884 * 119.68712 * 0.02562 * 15 14 13 25 25 C 1.36338 * 119.84112 * 359.97438 * 24 15 14 26 26 C 1.53778 * 87.08239 * 334.56446 * 9 8 6 27 27 C 1.52999 * 113.61142 * 139.98077 * 26 9 8 28 28 C 1.52991 * 113.61482 * 270.88094 * 26 9 8 29 29 H 1.09006 * 109.47126 * 300.00405 * 1 2 3 30 30 H 1.08997 * 109.46907 * 60.00030 * 1 2 3 31 31 H 1.08997 * 109.46665 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47674 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47125 * 300.00059 * 3 2 1 34 34 H 1.08997 * 109.47669 * 59.99804 * 3 2 1 35 35 H 1.08998 * 109.46731 * 299.99535 * 4 2 1 36 36 H 1.08997 * 109.47249 * 60.00179 * 4 2 1 37 37 H 1.09000 * 109.47113 * 180.02562 * 4 2 1 38 38 H 1.09000 * 113.61700 * 25.43006 * 8 6 5 39 39 H 1.09002 * 113.61231 * 254.52498 * 8 6 5 40 40 H 0.97001 * 120.00088 * 287.50087 * 11 9 8 41 41 H 1.07995 * 119.91954 * 0.02562 * 13 12 11 42 42 H 1.07998 * 120.08483 * 180.23405 * 14 13 12 43 43 H 0.97008 * 119.99831 * 179.97438 * 19 18 16 44 44 H 1.08007 * 120.07828 * 179.97438 * 24 15 14 45 45 H 1.08004 * 119.91929 * 180.02562 * 25 24 15 46 46 H 1.09000 * 109.47234 * 79.50568 * 27 26 9 47 47 H 1.09006 * 109.47204 * 199.50546 * 27 26 9 48 48 H 1.09006 * 109.47176 * 319.50227 * 27 26 9 49 49 H 1.09001 * 109.47278 * 40.49728 * 28 26 9 50 50 H 1.09007 * 109.47232 * 160.49396 * 28 26 9 51 51 H 1.08992 * 109.47625 * 280.49700 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0064 -0.6735 1.1668 6 6 1.5847 -2.0355 1.2645 7 1 0.7242 -2.2595 0.6341 8 6 2.7334 -3.0477 1.1214 9 6 2.0562 -3.8555 2.2411 10 1 2.7574 -4.2870 2.9555 11 7 1.0730 -4.8255 1.7526 12 6 1.3619 -6.1833 1.7848 13 6 0.4225 -7.1045 1.3190 14 6 0.7016 -8.4388 1.3423 15 6 1.9398 -8.8872 1.8433 16 6 2.2355 -10.2669 1.8711 17 1 2.9556 -10.6507 2.5786 18 6 1.5960 -11.1373 0.9824 19 7 1.0069 -10.6646 -0.0867 20 14 1.5826 -12.9742 1.3211 21 1 0.3865 -13.3197 2.1305 22 1 1.5403 -13.7146 0.0345 23 1 2.8105 -13.3489 2.0676 24 6 2.8808 -7.9519 2.3172 25 6 2.5881 -6.6207 2.2878 26 6 1.4333 -2.5309 2.7125 27 6 -0.0220 -2.6650 3.1653 28 6 2.3011 -1.7681 3.7153 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7489 -1.2491 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 3.7072 -2.6455 1.4009 39 1 2.7463 -3.5604 0.1596 40 1 0.2201 -4.5192 1.4066 41 1 -0.5258 -6.7592 0.9346 42 1 -0.0247 -9.1502 0.9781 43 1 0.5637 -11.2683 -0.7033 44 1 3.8317 -8.2887 2.7030 45 1 3.3087 -5.9025 2.6505 46 1 -0.0519 -3.0693 4.1771 47 1 -0.4987 -1.6848 3.1515 48 1 -0.5523 -3.3365 2.4899 49 1 3.3465 -1.8312 3.4130 50 1 1.9929 -0.7229 3.7413 51 1 2.1824 -2.2067 4.7060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659379083.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:20 Heat of formation + Delta-G solvation = -10.779972 kcal Electronic energy + Delta-G solvation = -27252.643361 eV Core-core repulsion = 23731.089281 eV Total energy + Delta-G solvation = -3521.554080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.54872 -38.27137 -37.31505 -34.26858 -33.07438 -32.19048 -30.40850 -29.43722 -28.43859 -27.83617 -27.50181 -27.09693 -24.74726 -23.72830 -22.32956 -21.02952 -20.27373 -20.01935 -18.05003 -17.13241 -16.86949 -16.11205 -15.60113 -15.26784 -15.06921 -14.87321 -14.04429 -13.94307 -13.85023 -13.47670 -13.32548 -12.86953 -12.81399 -12.58918 -12.41188 -12.25030 -12.19849 -12.13663 -12.00558 -11.97319 -11.90616 -11.79378 -11.78328 -11.46804 -11.18382 -11.06387 -10.97281 -10.82039 -10.62848 -10.41083 -10.30498 -9.93823 -9.62790 -9.27275 -9.25236 -9.20477 -8.52426 -7.48200 -6.64239 -6.38089 -4.02954 2.91497 3.11298 3.15636 3.18982 3.35567 3.61235 4.05765 4.18292 4.48581 4.59988 4.68586 4.72616 4.80152 4.83874 4.95651 5.09957 5.25362 5.31354 5.32756 5.37363 5.51459 5.56310 5.62413 5.64762 5.71550 5.78037 5.79826 5.84143 5.86104 5.92115 5.99141 6.05600 6.08126 6.09133 6.15772 6.22294 6.30251 6.36980 6.42436 6.49275 6.88891 7.06977 7.20964 7.31519 7.35308 7.61493 7.67657 7.80984 8.15808 8.34823 8.50175 8.67556 8.80554 9.06734 9.15911 10.37639 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.025511 B = 0.002615 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.321089 B =10705.959653 C =11061.635022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.105 3.895 3 C -0.136 4.136 4 C -0.176 4.176 5 O -0.359 6.359 6 C 0.074 3.926 7 H 0.085 0.915 8 C -0.176 4.176 9 C 0.155 3.845 10 H 0.093 0.907 11 N -0.739 5.739 12 C 0.092 3.908 13 C -0.162 4.162 14 C -0.124 4.124 15 C 0.075 3.925 16 C -0.467 4.467 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.808 5.808 20 Si 0.903 3.097 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.265 1.265 24 C -0.188 4.188 25 C -0.157 4.157 26 C -0.093 4.093 27 C -0.133 4.133 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.384 0.616 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.276 0.724 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.057 0.943 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 19.966 0.405 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.066 3.934 3 C -0.193 4.193 4 C -0.233 4.233 5 O -0.278 6.278 6 C 0.016 3.984 7 H 0.103 0.897 8 C -0.216 4.216 9 C 0.046 3.954 10 H 0.110 0.890 11 N -0.373 5.373 12 C -0.004 4.004 13 C -0.184 4.184 14 C -0.144 4.144 15 C 0.072 3.928 16 C -0.498 4.498 17 H 0.091 0.909 18 C -0.141 4.141 19 N -0.435 5.435 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.189 1.189 24 C -0.209 4.209 25 C -0.179 4.179 26 C -0.094 4.094 27 C -0.191 4.191 28 C -0.172 4.172 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.218 0.782 41 H 0.103 0.897 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.176 19.979 0.397 20.018 hybrid contribution -0.517 -0.900 -0.473 1.140 sum -1.694 19.079 -0.075 19.155 Atomic orbital electron populations 1.22456 0.96013 1.02524 1.02495 1.21461 0.92880 0.93034 0.86074 1.21737 1.01860 0.93588 1.02130 1.22458 1.02225 1.01056 0.97582 1.88006 1.73705 1.23994 1.42130 1.23785 0.97047 0.80975 0.96602 0.89703 1.24093 0.98784 0.97531 1.01152 1.21376 0.91485 0.87492 0.95024 0.88959 1.43660 1.17986 1.02430 1.73236 1.17314 0.95777 0.82182 1.05138 1.20018 0.97704 0.93742 1.06944 1.20910 0.97395 0.93323 1.02748 1.17500 0.90593 0.92958 0.91722 1.19379 1.21848 0.92000 1.16543 0.90941 1.25796 0.93695 1.00929 0.93658 1.69859 1.28215 1.37194 1.08226 0.86403 0.79612 0.82689 0.78467 1.19553 1.20603 1.18863 1.20572 0.98682 0.92248 1.09366 1.19907 0.95735 0.95582 1.06670 1.22586 0.96425 0.95959 0.94466 1.21650 0.94820 1.00886 1.01728 1.21348 0.99034 0.99688 0.97138 0.91859 0.91785 0.92135 0.91913 0.91482 0.92006 0.92072 0.91986 0.91784 0.89473 0.91071 0.78217 0.89677 0.86375 0.91349 0.89147 0.89287 0.92235 0.93008 0.92360 0.92336 0.92013 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.38 37.16 0.31 -1.25 16 2 C 0.10 1.02 1.11 -90.62 -0.10 0.92 16 3 C -0.14 -1.11 8.84 37.16 0.33 -0.78 16 4 C -0.18 -1.69 8.38 37.16 0.31 -1.38 16 5 O -0.36 -4.23 9.07 -35.23 -0.32 -4.55 16 6 C 0.07 0.88 2.13 -25.92 -0.06 0.83 16 7 H 0.09 1.02 5.51 -51.93 -0.29 0.74 16 8 C -0.18 -2.38 7.36 -25.92 -0.19 -2.57 16 9 C 0.15 2.27 3.56 -67.12 -0.24 2.03 16 10 H 0.09 1.46 6.05 -51.93 -0.31 1.14 16 11 N -0.74 -12.50 4.86 -51.25 -0.25 -12.75 16 12 C 0.09 1.98 6.67 -83.69 -0.56 1.42 16 13 C -0.16 -3.76 9.82 -39.77 -0.39 -4.15 16 14 C -0.12 -3.24 8.64 -39.26 -0.34 -3.58 16 15 C 0.08 2.03 5.57 -106.79 -0.60 1.44 16 16 C -0.47 -12.72 9.03 -37.88 -0.34 -13.06 16 17 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 18 C 0.07 1.92 5.13 -17.34 -0.09 1.84 16 19 N -0.81 -21.49 10.96 55.54 0.61 -20.88 16 20 Si 0.90 19.32 29.60 -169.99 -5.03 14.29 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 24 C -0.19 -4.68 9.74 -39.27 -0.38 -5.06 16 25 C -0.16 -3.51 9.19 -39.77 -0.37 -3.88 16 26 C -0.09 -1.14 1.34 -153.70 -0.21 -1.34 16 27 C -0.13 -1.56 8.96 37.16 0.33 -1.23 16 28 C -0.11 -1.29 8.47 37.15 0.31 -0.98 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.57 6.24 -51.93 -0.32 0.24 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.65 7.02 -51.93 -0.36 0.29 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.14 7.63 -51.93 -0.40 0.75 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.38 5.95 6.89 -40.82 -0.28 5.67 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.12 3.21 6.16 -52.49 -0.32 2.88 16 43 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 44 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 45 H 0.09 1.79 6.01 -52.48 -0.32 1.47 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.70 5.99 -51.93 -0.31 0.39 16 49 H 0.06 0.66 7.32 -51.93 -0.38 0.28 16 50 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 51 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -27.71 392.77 -10.08 -37.79 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -8.75 Total: 10.96 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: -2.25 Total: -30.78 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.36 Total: -33.63 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -0.32 Total: -4.55 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -27.71 -10.08 -37.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659379083.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.013 kcal (2) G-P(sol) polarization free energy of solvation -27.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds