Wall clock time and date at job start Tue Mar 31 2020 11:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47037 * 2 1 4 4 C 1.52992 * 109.47479 * 239.99821 * 2 1 3 5 5 O 1.42904 * 109.47225 * 119.99455 * 2 1 3 6 6 C 1.42897 * 113.99406 * 60.00227 * 5 2 1 7 7 H 1.08998 * 112.91155 * 18.75012 * 6 5 2 8 8 C 1.53963 * 113.61290 * 247.42162 * 6 5 2 9 9 C 1.53784 * 87.11255 * 270.84323 * 8 6 5 10 10 H 1.09000 * 113.68759 * 89.19942 * 9 8 6 11 11 N 1.46497 * 113.61450 * 220.09056 * 9 8 6 12 12 C 1.38861 * 119.99846 * 252.49896 * 11 9 8 13 13 C 1.39560 * 119.84081 * 359.72061 * 12 11 9 14 14 C 1.36348 * 120.16230 * 179.75867 * 13 12 11 15 15 C 1.40882 * 119.83089 * 0.49937 * 14 13 12 16 16 C 1.41138 * 120.15396 * 179.78075 * 15 14 13 17 17 H 1.08001 * 120.00004 * 150.10980 * 16 15 14 18 18 C 1.39867 * 120.00268 * 330.10962 * 16 15 14 19 19 N 1.30897 * 120.00206 * 161.72600 * 18 16 15 20 20 Si 1.86799 * 119.99695 * 341.72680 * 18 16 15 21 21 H 1.48500 * 109.47120 * 95.41273 * 20 18 16 22 22 H 1.48495 * 109.46944 * 215.41056 * 20 18 16 23 23 H 1.48502 * 109.47384 * 335.41193 * 20 18 16 24 24 C 1.40893 * 119.69140 * 359.76009 * 15 14 13 25 25 C 1.36340 * 119.83457 * 359.97438 * 24 15 14 26 26 C 1.53786 * 113.61358 * 150.00157 * 6 5 2 27 27 C 1.52999 * 113.61239 * 334.56826 * 26 6 5 28 28 C 1.52999 * 113.61498 * 203.74718 * 26 6 5 29 29 H 1.09003 * 109.47087 * 300.00326 * 1 2 3 30 30 H 1.08998 * 109.46942 * 59.99898 * 1 2 3 31 31 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46805 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46820 * 299.99944 * 3 2 1 34 34 H 1.09000 * 109.47008 * 59.99667 * 3 2 1 35 35 H 1.09002 * 109.46998 * 300.00199 * 4 2 1 36 36 H 1.08998 * 109.46995 * 59.99678 * 4 2 1 37 37 H 1.09004 * 109.47469 * 179.97438 * 4 2 1 38 38 H 1.09000 * 113.53397 * 156.29671 * 8 6 5 39 39 H 1.08993 * 113.66623 * 25.41523 * 8 6 5 40 40 H 0.97002 * 119.99989 * 72.49913 * 11 9 8 41 41 H 1.07997 * 119.92430 * 0.02562 * 13 12 11 42 42 H 1.07992 * 120.08425 * 180.28232 * 14 13 12 43 43 H 0.97004 * 120.00392 * 180.02562 * 19 18 16 44 44 H 1.08003 * 120.08172 * 180.02562 * 24 15 14 45 45 H 1.07997 * 119.91974 * 180.02562 * 25 24 15 46 46 H 1.09000 * 109.46737 * 298.47010 * 27 26 6 47 47 H 1.08999 * 109.47005 * 178.47001 * 27 26 6 48 48 H 1.08995 * 109.47161 * 58.46785 * 27 26 6 49 49 H 1.08999 * 109.47101 * 181.52591 * 28 26 6 50 50 H 1.09001 * 109.47126 * 301.52642 * 28 26 6 51 51 H 1.09003 * 109.47301 * 61.52651 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2491 5 8 2.0064 -0.6735 1.1669 6 6 1.5847 -2.0354 1.2646 7 1 1.2512 -2.4458 0.3114 8 6 0.6079 -2.2968 2.4256 9 6 1.8432 -2.5620 3.3024 10 1 2.2365 -1.6683 3.7868 11 7 1.6750 -3.6841 4.2291 12 6 1.5205 -3.4449 5.5882 13 6 1.5317 -2.1345 6.0684 14 6 1.3756 -1.8919 7.4010 15 6 1.2133 -2.9685 8.2951 16 6 1.0558 -2.7253 9.6764 17 1 0.4779 -3.4075 10.2823 18 6 1.6481 -1.6010 10.2606 19 7 1.2300 -1.1711 11.4241 20 14 3.0358 -0.7129 9.3803 21 1 2.4822 0.4294 8.6096 22 1 4.0129 -0.2092 10.3786 23 1 3.7154 -1.6527 8.4530 24 6 1.2084 -4.2890 7.8038 25 6 1.3601 -4.5163 6.4681 26 6 2.5837 -2.9378 2.0080 27 6 4.0254 -2.4282 1.9568 28 6 2.4633 -4.4181 1.6407 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1301 -0.7208 -1.2494 38 1 -0.0191 -3.1759 2.2773 39 1 0.0400 -1.4164 2.7262 40 1 1.6716 -4.5941 3.8933 41 1 1.6601 -1.3104 5.3823 42 1 1.3800 -0.8772 7.7706 43 1 1.6405 -0.3911 11.8292 44 1 1.0839 -5.1190 8.4835 45 1 1.3561 -5.5279 6.0900 46 1 4.3616 -2.3927 0.9206 47 1 4.6687 -3.1003 2.5247 48 1 4.0730 -1.4286 2.3886 49 1 3.1803 -4.9965 2.2235 50 1 1.4534 -4.7656 1.8587 51 1 2.6706 -4.5470 0.5784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659379084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:23 Heat of formation + Delta-G solvation = -10.850749 kcal Electronic energy + Delta-G solvation = -27480.302289 eV Core-core repulsion = 23958.745140 eV Total energy + Delta-G solvation = -3521.557149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62717 -38.38052 -37.50299 -34.26530 -33.12665 -32.42791 -30.49286 -29.78820 -28.89858 -27.76446 -27.60139 -27.44354 -24.85984 -23.25471 -22.46753 -21.58623 -20.37694 -19.98510 -18.13317 -17.31386 -16.84335 -16.61987 -15.50970 -15.43523 -14.97286 -14.95277 -14.20792 -14.03335 -13.78016 -13.45869 -13.38952 -13.27660 -12.90368 -12.64704 -12.51324 -12.41917 -12.38316 -12.21572 -12.18124 -12.08451 -12.07754 -11.97372 -11.94877 -11.64111 -11.40839 -11.12062 -10.91447 -10.75585 -10.65708 -10.40081 -10.13665 -9.89969 -9.86371 -9.42123 -9.40081 -9.10958 -8.61725 -7.71994 -6.72288 -6.53015 -4.11849 2.75291 2.85312 3.24084 3.33654 3.38287 3.45673 4.15044 4.25222 4.40921 4.49569 4.59441 4.64720 4.71635 4.77210 4.95933 5.00698 5.05590 5.22163 5.24165 5.31939 5.45305 5.49819 5.55327 5.55552 5.58267 5.59084 5.66070 5.69465 5.77952 5.84964 5.90844 5.96522 6.01789 6.02121 6.06101 6.07729 6.11648 6.25883 6.35223 6.43727 6.59758 6.77346 6.96542 7.20166 7.25331 7.29925 7.52656 7.64441 7.99634 8.12248 8.38352 8.54338 8.64137 8.90058 9.03976 10.32257 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.003304 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.164805 B = 8471.377260 C = 9266.907132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.106 3.894 3 C -0.138 4.138 4 C -0.177 4.177 5 O -0.348 6.348 6 C 0.073 3.927 7 H 0.075 0.925 8 C -0.177 4.177 9 C 0.161 3.839 10 H 0.104 0.896 11 N -0.747 5.747 12 C 0.094 3.906 13 C -0.144 4.144 14 C -0.197 4.197 15 C 0.059 3.941 16 C -0.456 4.456 17 H 0.085 0.915 18 C 0.083 3.917 19 N -0.826 5.826 20 Si 0.907 3.093 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.246 1.246 24 C -0.169 4.169 25 C -0.147 4.147 26 C -0.096 4.096 27 C -0.125 4.125 28 C -0.128 4.128 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.386 0.614 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.280 0.720 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 0.623 -25.098 25.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.067 3.933 3 C -0.195 4.195 4 C -0.234 4.234 5 O -0.267 6.267 6 C 0.014 3.986 7 H 0.093 0.907 8 C -0.217 4.217 9 C 0.054 3.946 10 H 0.121 0.879 11 N -0.380 5.380 12 C -0.003 4.003 13 C -0.166 4.166 14 C -0.216 4.216 15 C 0.055 3.945 16 C -0.486 4.486 17 H 0.103 0.897 18 C -0.133 4.133 19 N -0.452 5.452 20 Si 0.734 3.266 21 H -0.200 1.200 22 H -0.222 1.222 23 H -0.170 1.170 24 C -0.189 4.189 25 C -0.169 4.169 26 C -0.098 4.098 27 C -0.182 4.182 28 C -0.185 4.185 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.220 0.780 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.078 0.922 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.259 1.033 -24.722 24.847 hybrid contribution 0.312 0.093 -0.552 0.641 sum 2.571 1.126 -25.274 25.429 Atomic orbital electron populations 1.22466 0.95634 1.02600 1.02655 1.21505 0.93172 0.93112 0.85497 1.21753 1.01916 0.93393 1.02445 1.22451 1.02163 1.00939 0.97869 1.87982 1.73371 1.22851 1.42479 1.22990 0.95681 0.82794 0.97088 0.90749 1.24125 0.98308 1.02028 0.97221 1.22146 0.93834 0.91335 0.87319 0.87872 1.43942 1.84336 1.06263 1.03440 1.17327 1.06588 0.93341 0.83063 1.20006 1.07222 0.93844 0.95501 1.20645 1.10414 0.97820 0.92756 1.17635 0.92380 0.90865 0.93586 1.19265 1.29245 1.07383 0.92696 0.89680 1.26037 0.97231 0.95397 0.94619 1.69741 1.37120 1.21583 1.16786 0.86391 0.81124 0.80070 0.78994 1.20023 1.22216 1.16950 1.20610 1.08314 0.96165 0.93804 1.19954 1.07795 0.95509 0.93669 1.22561 0.95664 0.94857 0.96679 1.21520 0.94300 1.01378 1.00985 1.21520 1.02192 0.93692 1.01118 0.91589 0.91908 0.92195 0.91842 0.91342 0.91674 0.92201 0.91749 0.91756 0.89623 0.90962 0.77983 0.88785 0.88341 0.90984 0.88245 0.89038 0.93168 0.92917 0.91857 0.91617 0.92160 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 8.38 37.16 0.31 -1.18 16 2 C 0.11 0.97 1.11 -90.62 -0.10 0.87 16 3 C -0.14 -1.13 8.84 37.16 0.33 -0.80 16 4 C -0.18 -1.35 8.38 37.15 0.31 -1.03 16 5 O -0.35 -4.04 8.89 -35.23 -0.31 -4.35 16 6 C 0.07 0.80 2.33 -25.82 -0.06 0.74 16 7 H 0.07 0.71 5.51 -51.93 -0.29 0.43 16 8 C -0.18 -2.23 7.37 -25.82 -0.19 -2.42 16 9 C 0.16 2.33 3.40 -67.11 -0.23 2.10 16 10 H 0.10 1.72 5.93 -51.93 -0.31 1.41 16 11 N -0.75 -12.08 5.38 -51.25 -0.28 -12.35 16 12 C 0.09 1.93 6.67 -83.69 -0.56 1.37 16 13 C -0.14 -3.22 9.19 -39.77 -0.37 -3.59 16 14 C -0.20 -4.92 7.11 -39.26 -0.28 -5.20 16 15 C 0.06 1.54 5.10 -106.79 -0.55 1.00 16 16 C -0.46 -12.89 9.55 -37.87 -0.36 -13.25 16 17 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 18 C 0.08 2.29 5.40 -17.34 -0.09 2.20 16 19 N -0.83 -23.24 13.93 55.54 0.77 -22.47 16 20 Si 0.91 21.96 24.51 -169.99 -4.17 17.79 16 21 H -0.27 -6.46 6.70 56.52 0.38 -6.08 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.25 -6.10 6.87 56.52 0.39 -5.72 16 24 C -0.17 -4.02 9.74 -39.26 -0.38 -4.40 16 25 C -0.15 -3.11 9.82 -39.77 -0.39 -3.50 16 26 C -0.10 -1.10 1.34 -153.69 -0.21 -1.31 16 27 C -0.12 -1.45 8.67 37.16 0.32 -1.13 16 28 C -0.13 -1.24 7.81 37.16 0.29 -0.95 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.51 7.02 -51.93 -0.36 0.15 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.45 6.25 -51.93 -0.32 0.13 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.09 1.03 7.64 -51.93 -0.40 0.63 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.39 5.51 6.84 -40.82 -0.28 5.23 16 41 H 0.09 1.94 6.01 -52.49 -0.32 1.62 16 42 H 0.10 2.50 4.73 -52.49 -0.25 2.25 16 43 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 44 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 45 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 46 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.81 7.62 -51.93 -0.40 0.42 16 49 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 50 H 0.06 0.57 6.72 -51.93 -0.35 0.22 16 51 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 388.01 15.07 5.85 5.85 Total: -1.00 -29.04 388.01 -9.11 -38.15 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.78 Total: 7.89 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: -2.20 Total: -30.50 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.50 Total: -34.82 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: -0.31 Total: -4.35 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.17 Total: 17.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.04 -9.11 -38.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659379084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.298 kcal (2) G-P(sol) polarization free energy of solvation -29.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds