Wall clock time and date at job start Tue Mar 31 2020 11:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.47037 * 2 1 4 4 C 1.52992 * 109.47479 * 239.99821 * 2 1 3 5 5 O 1.42904 * 109.47225 * 119.99455 * 2 1 3 6 6 C 1.42897 * 113.99406 * 60.00227 * 5 2 1 7 7 H 1.08998 * 112.91155 * 18.75012 * 6 5 2 8 8 C 1.53963 * 113.61290 * 247.42162 * 6 5 2 9 9 C 1.53784 * 87.11255 * 270.84323 * 8 6 5 10 10 H 1.09000 * 113.68759 * 89.19942 * 9 8 6 11 11 N 1.46497 * 113.61450 * 220.09056 * 9 8 6 12 12 C 1.38861 * 119.99846 * 252.49896 * 11 9 8 13 13 C 1.39560 * 119.84081 * 359.72061 * 12 11 9 14 14 C 1.36348 * 120.16230 * 179.75867 * 13 12 11 15 15 C 1.40882 * 119.83089 * 0.49937 * 14 13 12 16 16 C 1.41138 * 120.15396 * 179.78075 * 15 14 13 17 17 H 1.08001 * 120.00004 * 150.10980 * 16 15 14 18 18 C 1.39867 * 120.00268 * 330.10962 * 16 15 14 19 19 N 1.30897 * 120.00206 * 161.72600 * 18 16 15 20 20 Si 1.86799 * 119.99695 * 341.72680 * 18 16 15 21 21 H 1.48500 * 109.47120 * 95.41273 * 20 18 16 22 22 H 1.48495 * 109.46944 * 215.41056 * 20 18 16 23 23 H 1.48502 * 109.47384 * 335.41193 * 20 18 16 24 24 C 1.40893 * 119.69140 * 359.76009 * 15 14 13 25 25 C 1.36340 * 119.83457 * 359.97438 * 24 15 14 26 26 C 1.53786 * 113.61358 * 150.00157 * 6 5 2 27 27 C 1.52999 * 113.61239 * 334.56826 * 26 6 5 28 28 C 1.52999 * 113.61498 * 203.74718 * 26 6 5 29 29 H 1.09003 * 109.47087 * 300.00326 * 1 2 3 30 30 H 1.08998 * 109.46942 * 59.99898 * 1 2 3 31 31 H 1.09002 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.46805 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46820 * 299.99944 * 3 2 1 34 34 H 1.09000 * 109.47008 * 59.99667 * 3 2 1 35 35 H 1.09002 * 109.46998 * 300.00199 * 4 2 1 36 36 H 1.08998 * 109.46995 * 59.99678 * 4 2 1 37 37 H 1.09004 * 109.47469 * 179.97438 * 4 2 1 38 38 H 1.09000 * 113.53397 * 156.29671 * 8 6 5 39 39 H 1.08993 * 113.66623 * 25.41523 * 8 6 5 40 40 H 0.97002 * 119.99989 * 72.49913 * 11 9 8 41 41 H 1.07997 * 119.92430 * 0.02562 * 13 12 11 42 42 H 1.07992 * 120.08425 * 180.28232 * 14 13 12 43 43 H 0.97004 * 120.00392 * 180.02562 * 19 18 16 44 44 H 1.08003 * 120.08172 * 180.02562 * 24 15 14 45 45 H 1.07997 * 119.91974 * 180.02562 * 25 24 15 46 46 H 1.09000 * 109.46737 * 298.47010 * 27 26 6 47 47 H 1.08999 * 109.47005 * 178.47001 * 27 26 6 48 48 H 1.08995 * 109.47161 * 58.46785 * 27 26 6 49 49 H 1.08999 * 109.47101 * 181.52591 * 28 26 6 50 50 H 1.09001 * 109.47126 * 301.52642 * 28 26 6 51 51 H 1.09003 * 109.47301 * 61.52651 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2491 5 8 2.0064 -0.6735 1.1669 6 6 1.5847 -2.0354 1.2646 7 1 1.2512 -2.4458 0.3114 8 6 0.6079 -2.2968 2.4256 9 6 1.8432 -2.5620 3.3024 10 1 2.2365 -1.6683 3.7868 11 7 1.6750 -3.6841 4.2291 12 6 1.5205 -3.4449 5.5882 13 6 1.5317 -2.1345 6.0684 14 6 1.3756 -1.8919 7.4010 15 6 1.2133 -2.9685 8.2951 16 6 1.0558 -2.7253 9.6764 17 1 0.4779 -3.4075 10.2823 18 6 1.6481 -1.6010 10.2606 19 7 1.2300 -1.1711 11.4241 20 14 3.0358 -0.7129 9.3803 21 1 2.4822 0.4294 8.6096 22 1 4.0129 -0.2092 10.3786 23 1 3.7154 -1.6527 8.4530 24 6 1.2084 -4.2890 7.8038 25 6 1.3601 -4.5163 6.4681 26 6 2.5837 -2.9378 2.0080 27 6 4.0254 -2.4282 1.9568 28 6 2.4633 -4.4181 1.6407 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1301 -0.7208 -1.2494 38 1 -0.0191 -3.1759 2.2773 39 1 0.0400 -1.4164 2.7262 40 1 1.6716 -4.5941 3.8933 41 1 1.6601 -1.3104 5.3823 42 1 1.3800 -0.8772 7.7706 43 1 1.6405 -0.3911 11.8292 44 1 1.0839 -5.1190 8.4835 45 1 1.3561 -5.5279 6.0900 46 1 4.3616 -2.3927 0.9206 47 1 4.6687 -3.1003 2.5247 48 1 4.0730 -1.4286 2.3886 49 1 3.1803 -4.9965 2.2235 50 1 1.4534 -4.7656 1.8587 51 1 2.6706 -4.5470 0.5784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001659379084.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:22 Heat of formation + Delta-G solvation = -26.310460 kcal Electronic energy + Delta-G solvation = -27480.972673 eV Core-core repulsion = 23958.745140 eV Total energy + Delta-G solvation = -3522.227533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.60728 -39.83535 -38.67726 -35.95869 -34.51465 -33.65617 -31.79004 -31.35903 -30.59899 -28.42539 -28.31940 -28.18668 -26.47325 -24.68767 -23.54497 -23.28636 -21.82157 -21.00793 -19.36505 -19.16013 -18.20017 -17.68993 -16.85281 -16.53783 -16.33532 -15.87124 -15.68435 -15.19314 -15.09886 -14.78951 -14.46078 -14.39517 -14.28554 -14.17739 -13.81771 -13.73783 -13.68682 -13.29958 -13.11214 -13.02792 -12.95482 -12.75861 -12.70609 -12.66127 -12.60384 -12.59726 -12.20358 -12.08699 -11.97913 -11.78452 -11.55340 -11.48378 -11.29516 -10.95815 -10.81158 -10.31535 -10.26812 -9.56881 -8.77321 -8.24944 -6.16539 0.88025 0.97055 1.27309 1.41189 1.50145 2.17328 2.61385 2.70523 2.88544 3.49124 3.57024 3.65099 3.91613 3.97285 3.97964 4.05002 4.14917 4.25771 4.29554 4.32454 4.35411 4.60879 4.68055 4.69291 4.72943 4.76555 4.79128 4.83242 4.86107 4.95056 4.96391 4.96626 4.99022 5.06104 5.07151 5.10261 5.13809 5.17295 5.24199 5.34534 5.36683 5.38695 5.43918 5.49413 5.53480 5.69770 5.78353 6.00817 6.25908 6.44298 6.47859 6.69529 6.91240 6.99919 7.26548 8.33388 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.003304 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.164805 B = 8471.377260 C = 9266.907132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 C -0.138 4.138 4 C -0.172 4.172 5 O -0.369 6.369 6 C 0.084 3.916 7 H 0.097 0.903 8 C -0.172 4.172 9 C 0.143 3.857 10 H 0.078 0.922 11 N -0.732 5.732 12 C 0.128 3.872 13 C -0.163 4.163 14 C -0.201 4.201 15 C 0.025 3.975 16 C -0.489 4.489 17 H 0.051 0.949 18 C 0.044 3.956 19 N -0.870 5.870 20 Si 0.961 3.039 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.256 1.256 24 C -0.169 4.169 25 C -0.151 4.151 26 C -0.085 4.085 27 C -0.122 4.122 28 C -0.127 4.127 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.056 0.944 40 H 0.401 0.599 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.287 0.713 44 H 0.104 0.896 45 H 0.130 0.870 46 H 0.066 0.934 47 H 0.049 0.951 48 H 0.044 0.956 49 H 0.064 0.936 50 H 0.065 0.935 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 -0.317 -29.787 29.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.059 3.941 3 C -0.195 4.195 4 C -0.230 4.230 5 O -0.289 6.289 6 C 0.026 3.974 7 H 0.115 0.885 8 C -0.212 4.212 9 C 0.036 3.964 10 H 0.096 0.904 11 N -0.365 5.365 12 C 0.028 3.972 13 C -0.185 4.185 14 C -0.221 4.221 15 C 0.022 3.978 16 C -0.520 4.520 17 H 0.069 0.931 18 C -0.167 4.167 19 N -0.500 5.500 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.180 1.180 24 C -0.189 4.189 25 C -0.173 4.173 26 C -0.087 4.087 27 C -0.180 4.180 28 C -0.184 4.184 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.238 0.762 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.123 0.877 45 H 0.148 0.852 46 H 0.085 0.915 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.993 0.083 -29.468 29.620 hybrid contribution 0.044 0.288 0.603 0.669 sum 3.037 0.370 -28.865 29.027 Atomic orbital electron populations 1.22448 0.95254 1.02660 1.02769 1.21733 0.93535 0.93386 0.85435 1.21786 1.01711 0.93216 1.02811 1.22409 1.01948 1.01099 0.97508 1.87976 1.73659 1.23267 1.43989 1.22905 0.94426 0.82758 0.97327 0.88537 1.24082 0.97725 1.01907 0.97489 1.22355 0.96089 0.90003 0.87967 0.90370 1.44012 1.82766 1.07874 1.01853 1.17511 1.02183 0.92504 0.85049 1.20182 1.08078 0.95474 0.94748 1.20675 1.10479 0.97134 0.93790 1.17729 0.94734 0.92440 0.92913 1.19264 1.30956 1.08045 0.93760 0.93103 1.26652 0.98828 0.96002 0.95239 1.69777 1.38912 1.22977 1.18288 0.85549 0.78782 0.78968 0.78077 1.19218 1.20697 1.18012 1.20827 1.07300 0.95403 0.95379 1.20266 1.06970 0.97561 0.92540 1.22530 0.95322 0.96481 0.94326 1.21490 0.94465 1.00217 1.01803 1.21549 1.02573 0.91739 1.02579 0.93200 0.90123 0.92115 0.92186 0.89264 0.93054 0.91789 0.90119 0.92063 0.88404 0.92496 0.76219 0.87268 0.89316 0.90287 0.87745 0.85177 0.91536 0.93235 0.93690 0.91662 0.91580 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 8.38 71.98 0.60 -1.94 16 2 C 0.10 1.54 1.11 -10.79 -0.01 1.53 16 3 C -0.14 -2.03 8.84 71.99 0.64 -1.39 16 4 C -0.17 -2.01 8.38 71.98 0.60 -1.41 16 5 O -0.37 -7.84 8.89 -148.98 -1.32 -9.16 16 6 C 0.08 1.58 2.33 31.18 0.07 1.65 16 7 H 0.10 1.42 5.51 -2.39 -0.01 1.41 16 8 C -0.17 -3.90 7.37 31.18 0.23 -3.67 16 9 C 0.14 3.77 3.40 45.52 0.15 3.92 16 10 H 0.08 2.51 5.93 -2.39 -0.01 2.50 16 11 N -0.73 -21.29 5.38 -316.05 -1.70 -22.99 16 12 C 0.13 4.94 6.67 38.67 0.26 5.20 16 13 C -0.16 -7.13 9.19 22.15 0.20 -6.92 16 14 C -0.20 -10.17 7.11 22.48 0.16 -10.01 16 15 C 0.03 1.35 5.10 -21.27 -0.11 1.24 16 16 C -0.49 -29.22 9.55 23.38 0.22 -29.00 16 17 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 18 C 0.04 2.52 5.40 85.23 0.46 2.98 16 19 N -0.87 -51.42 13.93 21.82 0.30 -51.11 16 20 Si 0.96 46.67 24.51 68.60 1.68 48.35 16 21 H -0.27 -12.42 6.70 99.48 0.67 -11.75 16 22 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.26 -12.67 6.87 99.48 0.68 -11.99 16 24 C -0.17 -8.01 9.74 22.48 0.22 -7.79 16 25 C -0.15 -6.01 9.82 22.15 0.22 -5.79 16 26 C -0.09 -1.68 1.34 -51.65 -0.07 -1.75 16 27 C -0.12 -2.54 8.67 71.98 0.62 -1.91 16 28 C -0.13 -1.89 7.81 71.98 0.56 -1.33 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.06 0.86 7.02 -2.39 -0.02 0.85 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.69 6.25 -2.39 -0.01 0.68 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.10 1.99 7.64 -2.39 -0.02 1.97 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.40 9.66 6.84 -92.71 -0.63 9.03 16 41 H 0.11 4.42 6.01 -2.91 -0.02 4.40 16 42 H 0.09 4.59 4.73 -2.91 -0.01 4.58 16 43 H 0.29 15.36 8.30 -92.71 -0.77 14.59 16 44 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 46 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.04 1.09 7.62 -2.39 -0.02 1.07 16 49 H 0.06 1.00 8.11 -2.39 -0.02 0.98 16 50 H 0.07 0.92 6.72 -2.39 -0.02 0.91 16 51 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -65.99 388.01 4.21 -61.78 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.21 Total: 29.52 kcal Atomic # 6 Polarization: -61.43 SS G_CDS: 5.04 Total: -56.40 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.40 Total: -74.10 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: -1.32 Total: -9.16 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 1.68 Total: 48.35 kcal Total: -65.99 4.21 -61.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659379084.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.474 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds