Wall clock time and date at job start Tue Mar 31 2020 11:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47453 * 2 1 4 4 C 1.53004 * 109.47150 * 240.00143 * 2 1 3 5 5 O 1.42905 * 109.47298 * 119.99992 * 2 1 3 6 6 C 1.42899 * 113.99595 * 60.00031 * 5 2 1 7 7 H 1.09008 * 112.85214 * 21.69079 * 6 5 2 8 8 C 1.53781 * 113.61492 * 250.49755 * 6 5 2 9 9 C 1.53784 * 87.07873 * 270.88575 * 8 6 5 10 10 H 1.09005 * 113.60981 * 220.01464 * 9 8 6 11 11 N 1.46500 * 113.61556 * 89.11868 * 9 8 6 12 12 C 1.38851 * 120.00243 * 104.50470 * 11 9 8 13 13 C 1.39564 * 119.84160 * 359.72501 * 12 11 9 14 14 C 1.36344 * 120.15791 * 179.72308 * 13 12 11 15 15 C 1.40883 * 119.83638 * 0.54997 * 14 13 12 16 16 C 1.41140 * 120.15870 * 179.70518 * 15 14 13 17 17 H 1.07998 * 120.00789 * 155.11128 * 16 15 14 18 18 C 1.39873 * 119.99641 * 335.10876 * 16 15 14 19 19 N 1.30908 * 119.99698 * 342.12886 * 18 16 15 20 20 Si 1.86795 * 120.00067 * 162.13287 * 18 16 15 21 21 H 1.48493 * 109.47381 * 94.64910 * 20 18 16 22 22 H 1.48502 * 109.47052 * 214.65132 * 20 18 16 23 23 H 1.48497 * 109.47049 * 334.64825 * 20 18 16 24 24 C 1.40892 * 119.69113 * 359.72210 * 15 14 13 25 25 C 1.36332 * 119.83451 * 0.02562 * 24 15 14 26 26 C 1.53780 * 87.08171 * 334.56581 * 9 8 6 27 27 C 1.53000 * 113.61541 * 270.88809 * 26 9 8 28 28 C 1.52991 * 113.61454 * 139.98167 * 26 9 8 29 29 H 1.08998 * 109.47147 * 300.00372 * 1 2 3 30 30 H 1.08999 * 109.47108 * 59.99566 * 1 2 3 31 31 H 1.08994 * 109.47203 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47700 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47318 * 300.00305 * 3 2 1 34 34 H 1.09008 * 109.46866 * 60.00041 * 3 2 1 35 35 H 1.08995 * 109.47043 * 299.99635 * 4 2 1 36 36 H 1.08999 * 109.46877 * 60.00150 * 4 2 1 37 37 H 1.08998 * 109.46860 * 179.97438 * 4 2 1 38 38 H 1.09002 * 113.61676 * 25.42957 * 8 6 5 39 39 H 1.08995 * 113.61671 * 156.33753 * 8 6 5 40 40 H 0.97004 * 119.99752 * 284.50040 * 11 9 8 41 41 H 1.07997 * 119.91913 * 359.97438 * 13 12 11 42 42 H 1.08001 * 120.08082 * 180.27726 * 14 13 12 43 43 H 0.96998 * 119.99527 * 179.97438 * 19 18 16 44 44 H 1.07993 * 120.08236 * 180.02562 * 24 15 14 45 45 H 1.08001 * 119.92080 * 179.97438 * 25 24 15 46 46 H 1.09000 * 109.47375 * 157.49730 * 27 26 9 47 47 H 1.09008 * 109.46913 * 277.49682 * 27 26 9 48 48 H 1.08998 * 109.47157 * 37.49343 * 27 26 9 49 49 H 1.09000 * 109.47411 * 322.50641 * 28 26 9 50 50 H 1.09004 * 109.47359 * 82.50034 * 28 26 9 51 51 H 1.08994 * 109.47446 * 202.50084 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6737 1.1668 6 6 1.5847 -2.0355 1.2644 7 1 1.2997 -2.4605 0.3019 8 6 0.5519 -2.2824 2.3768 9 6 1.7421 -2.5276 3.3192 10 1 1.5849 -3.3510 4.0159 11 7 2.2322 -1.3122 3.9741 12 6 1.9384 -1.0770 5.3106 13 6 1.1710 -1.9979 6.0254 14 6 0.8833 -1.7762 7.3396 15 6 1.3530 -0.6085 7.9726 16 6 1.0540 -0.3691 9.3310 17 1 1.6995 0.2628 9.9230 18 6 -0.0786 -0.9502 9.9107 19 7 -1.0379 -1.4144 9.1504 20 14 -0.2224 -1.0638 11.7696 21 1 -0.9872 0.1026 12.2792 22 1 -0.9293 -2.3174 12.1357 23 1 1.1350 -1.0670 12.3718 24 6 2.1223 0.3195 7.2432 25 6 2.4066 0.0822 5.9311 26 6 2.5482 -2.9224 2.0705 27 6 2.4496 -4.4090 1.7220 28 6 3.9890 -2.4081 2.0833 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 -0.0333 -1.3992 2.6332 39 1 -0.0641 -3.1664 2.2123 40 1 2.7621 -0.6718 3.4740 41 1 0.8075 -2.8902 5.5375 42 1 0.2931 -2.4918 7.8927 43 1 -1.8231 -1.8177 9.5524 44 1 2.4859 1.2165 7.7222 45 1 2.9958 0.7928 5.3705 46 1 2.6825 -4.5510 0.6667 47 1 3.1579 -4.9724 2.3296 48 1 1.4380 -4.7626 1.9216 49 1 4.0156 -1.4126 2.5264 50 1 4.6109 -3.0838 2.6705 51 1 4.3673 -2.3614 1.0621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659379085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:26 Heat of formation + Delta-G solvation = -6.952418 kcal Electronic energy + Delta-G solvation = -27701.437375 eV Core-core repulsion = 24180.049270 eV Total energy + Delta-G solvation = -3521.388105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.56859 -38.09580 -37.23844 -34.12731 -32.94590 -32.25694 -30.32259 -29.36148 -28.47603 -27.67508 -27.44820 -27.04447 -24.75022 -23.58482 -22.27865 -21.03670 -20.30936 -19.81307 -17.90584 -17.13620 -16.84669 -16.01114 -15.35842 -15.21801 -15.03199 -14.84959 -14.08791 -13.86360 -13.80472 -13.51103 -13.25675 -12.84754 -12.73411 -12.52680 -12.42168 -12.28715 -12.15304 -12.05271 -11.97867 -11.90028 -11.84945 -11.72865 -11.68241 -11.43465 -11.06485 -10.99735 -10.95435 -10.75901 -10.53327 -10.45131 -10.17599 -9.70369 -9.61832 -9.27121 -9.16818 -9.11572 -8.39374 -7.40169 -6.56740 -6.26209 -3.94923 2.97094 3.17740 3.19485 3.23949 3.42037 3.48071 4.10776 4.30329 4.59240 4.65867 4.76888 4.78516 4.86091 4.91895 5.06056 5.13415 5.21895 5.32368 5.34169 5.43747 5.56981 5.60479 5.64244 5.68240 5.71674 5.74499 5.86054 5.88599 5.91517 5.93063 5.98643 6.07592 6.13153 6.15023 6.16609 6.36113 6.38774 6.42417 6.52275 6.54020 7.02159 7.07992 7.28257 7.39480 7.44486 7.67812 7.78745 7.95602 8.23201 8.40055 8.62502 8.83246 8.95591 9.13720 9.24773 10.44501 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.003036 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.173304 B = 9220.739567 C = 9618.123020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 C -0.138 4.138 4 C -0.176 4.176 5 O -0.345 6.345 6 C 0.077 3.923 7 H 0.068 0.932 8 C -0.187 4.187 9 C 0.164 3.836 10 H 0.082 0.918 11 N -0.731 5.731 12 C 0.100 3.900 13 C -0.166 4.166 14 C -0.123 4.123 15 C 0.073 3.927 16 C -0.468 4.468 17 H 0.071 0.929 18 C 0.075 3.925 19 N -0.809 5.809 20 Si 0.900 3.100 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.185 4.185 25 C -0.161 4.161 26 C -0.099 4.099 27 C -0.124 4.124 28 C -0.123 4.123 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.391 0.609 41 H 0.088 0.912 42 H 0.117 0.883 43 H 0.275 0.725 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.066 0.934 50 H 0.050 0.950 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -2.580 -19.516 20.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.069 3.931 3 C -0.195 4.195 4 C -0.234 4.234 5 O -0.264 6.264 6 C 0.019 3.981 7 H 0.086 0.914 8 C -0.227 4.227 9 C 0.055 3.945 10 H 0.100 0.900 11 N -0.365 5.365 12 C 0.003 3.997 13 C -0.188 4.188 14 C -0.143 4.143 15 C 0.070 3.930 16 C -0.499 4.499 17 H 0.089 0.911 18 C -0.140 4.140 19 N -0.437 5.437 20 Si 0.726 3.274 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.206 4.206 25 C -0.183 4.183 26 C -0.101 4.101 27 C -0.181 4.181 28 C -0.181 4.181 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.227 0.773 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.626 -2.724 -19.336 19.861 hybrid contribution -0.370 0.082 0.400 0.550 sum 3.257 -2.642 -18.936 19.395 Atomic orbital electron populations 1.22451 0.95709 1.02496 1.02578 1.21465 0.93152 0.93051 0.85430 1.21747 1.01793 0.93491 1.02450 1.22447 1.02045 1.00927 0.97946 1.87952 1.73215 1.22899 1.42333 1.23070 0.95454 0.82865 0.96745 0.91410 1.24134 0.98116 1.02249 0.98196 1.21370 0.92051 0.89332 0.91722 0.89970 1.43653 1.61477 1.22849 1.08543 1.17368 1.01934 0.96537 0.83837 1.20120 1.04040 0.98891 0.95740 1.20918 1.02131 0.97862 0.93389 1.17470 0.91815 0.90577 0.93158 1.19346 1.07830 1.27282 0.95467 0.91087 1.25774 0.94818 0.93619 0.99786 1.69868 1.05604 1.31325 1.36906 0.86440 0.79153 0.78202 0.83653 1.19940 1.20356 1.18726 1.20530 1.07148 0.99393 0.93490 1.19787 1.05845 0.96912 0.95729 1.22513 0.95770 0.94783 0.97008 1.21526 1.02263 0.93143 1.01176 1.21456 0.94176 1.01745 1.00678 0.91521 0.92113 0.92289 0.91929 0.91479 0.91576 0.92254 0.91863 0.91859 0.90383 0.89801 0.77270 0.89401 0.86567 0.91480 0.89216 0.89741 0.92524 0.91789 0.92173 0.91524 0.93043 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 8.31 37.15 0.31 -1.46 16 2 C 0.11 1.12 1.12 -90.62 -0.10 1.02 16 3 C -0.14 -1.32 8.84 37.16 0.33 -0.99 16 4 C -0.18 -1.51 8.38 37.16 0.31 -1.20 16 5 O -0.35 -4.40 7.70 -35.23 -0.27 -4.67 16 6 C 0.08 0.92 2.32 -25.92 -0.06 0.86 16 7 H 0.07 0.72 5.59 -51.92 -0.29 0.43 16 8 C -0.19 -2.59 7.15 -25.92 -0.19 -2.77 16 9 C 0.16 2.54 3.45 -67.12 -0.23 2.31 16 10 H 0.08 1.37 6.21 -51.93 -0.32 1.04 16 11 N -0.73 -13.27 4.77 -51.24 -0.24 -13.52 16 12 C 0.10 2.25 6.67 -83.69 -0.56 1.69 16 13 C -0.17 -3.97 9.18 -39.77 -0.37 -4.34 16 14 C -0.12 -3.29 8.63 -39.26 -0.34 -3.63 16 15 C 0.07 2.01 5.57 -106.79 -0.59 1.41 16 16 C -0.47 -13.01 9.03 -37.87 -0.34 -13.35 16 17 H 0.07 1.91 7.91 -52.49 -0.41 1.50 16 18 C 0.07 1.97 5.13 -17.33 -0.09 1.88 16 19 N -0.81 -21.93 10.98 55.54 0.61 -21.32 16 20 Si 0.90 19.63 29.60 -169.99 -5.03 14.60 16 21 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 24 C -0.19 -4.73 9.74 -39.26 -0.38 -5.11 16 25 C -0.16 -3.74 9.82 -39.77 -0.39 -4.13 16 26 C -0.10 -1.22 1.34 -153.70 -0.21 -1.42 16 27 C -0.12 -1.24 9.07 37.16 0.34 -0.90 16 28 C -0.12 -1.53 8.47 37.15 0.31 -1.22 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.59 6.98 -51.93 -0.36 0.23 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.06 0.50 6.21 -51.93 -0.32 0.18 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.02 7.65 -51.93 -0.40 0.62 16 40 H 0.39 6.85 5.73 -40.82 -0.23 6.62 16 41 H 0.09 1.93 6.07 -52.49 -0.32 1.61 16 42 H 0.12 3.23 6.18 -52.49 -0.32 2.90 16 43 H 0.27 6.81 8.30 -40.82 -0.34 6.47 16 44 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 45 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 48 H 0.06 0.57 7.34 -51.93 -0.38 0.19 16 49 H 0.07 0.93 5.54 -51.93 -0.29 0.64 16 50 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 390.12 15.07 5.88 5.88 Total: -1.00 -28.56 390.12 -10.01 -38.58 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -8.71 Total: 11.81 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -2.24 Total: -31.35 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 0.37 Total: -34.84 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.27 Total: -4.67 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.56 -10.01 -38.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659379085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.623 kcal (2) G-P(sol) polarization free energy of solvation -28.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds