Wall clock time and date at job start Tue Mar 31 2020 12:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46733 * 2 1 4 4 C 1.52998 * 109.46978 * 120.00045 * 2 1 3 5 5 N 1.46896 * 109.47184 * 63.44143 * 4 2 1 6 6 C 1.46897 * 111.00146 * 76.28582 * 5 4 2 7 7 C 1.50697 * 109.47521 * 199.87902 * 6 5 4 8 8 C 1.38288 * 119.97184 * 84.12924 * 7 6 5 9 9 C 1.38248 * 120.10896 * 179.70705 * 8 7 6 10 10 C 1.38165 * 120.05745 * 0.25058 * 9 8 7 11 11 C 1.38710 * 119.94400 * 0.03091 * 10 9 8 12 12 O 1.35903 * 120.05789 * 180.02562 * 11 10 9 13 13 C 1.42901 * 116.99630 * 359.97438 * 12 11 10 14 14 C 1.52998 * 109.46971 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47019 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00159 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99839 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00082 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99924 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47037 * 60.00072 * 19 17 15 21 21 H 1.48501 * 109.47209 * 179.97438 * 19 17 15 22 22 H 1.48490 * 109.47387 * 300.00046 * 19 17 15 23 23 C 1.38130 * 119.97293 * 264.38776 * 7 6 5 24 24 C 1.46901 * 110.99699 * 200.23938 * 5 4 2 25 25 C 1.53001 * 117.49666 * 131.60200 * 24 5 4 26 26 C 1.53000 * 117.50184 * 62.97923 * 24 5 4 27 27 H 1.08994 * 109.47508 * 304.62539 * 1 2 3 28 28 H 1.08995 * 109.47093 * 64.62899 * 1 2 3 29 29 H 1.09007 * 109.46704 * 184.62488 * 1 2 3 30 30 H 1.08991 * 109.47106 * 240.00401 * 2 1 3 31 31 H 1.08994 * 109.47137 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47534 * 300.00107 * 3 2 1 33 33 H 1.09002 * 109.47074 * 59.99853 * 3 2 1 34 34 H 1.08997 * 109.47252 * 303.43683 * 4 2 1 35 35 H 1.09004 * 109.46413 * 183.44371 * 4 2 1 36 36 H 1.09000 * 109.47109 * 79.87853 * 6 5 4 37 37 H 1.09001 * 109.47194 * 319.87883 * 6 5 4 38 38 H 1.07999 * 119.94242 * 359.97438 * 8 7 6 39 39 H 1.08003 * 119.96858 * 180.27797 * 9 8 7 40 40 H 1.07995 * 120.02628 * 179.97438 * 10 9 8 41 41 H 1.09009 * 109.46962 * 299.99705 * 13 12 11 42 42 H 1.08995 * 109.47407 * 59.99401 * 13 12 11 43 43 H 1.08997 * 109.47298 * 299.99426 * 14 13 12 44 44 H 1.09003 * 109.46997 * 59.99760 * 14 13 12 45 45 H 0.97001 * 120.00156 * 180.02562 * 18 17 15 46 46 H 1.08002 * 120.02310 * 359.97438 * 23 7 6 47 47 H 1.08996 * 115.55144 * 277.30439 * 24 5 4 48 48 H 1.08998 * 117.49841 * 359.97438 * 25 24 5 49 49 H 1.09002 * 117.49725 * 145.02053 * 25 24 5 50 50 H 1.08999 * 117.49868 * 214.97754 * 26 24 5 51 51 H 1.09001 * 117.49551 * 359.97225 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6194 -2.1281 1.2084 6 6 2.4444 -2.8971 0.2671 7 6 1.7187 -4.1593 -0.1218 8 6 0.7846 -4.1329 -1.1412 9 6 0.1216 -5.2904 -1.5045 10 6 0.3871 -6.4756 -0.8460 11 6 1.3193 -6.5035 0.1808 12 8 1.5827 -7.6682 0.8297 13 6 0.8620 -8.8260 0.4027 14 6 1.2886 -10.0310 1.2433 15 6 0.5282 -11.2518 0.7934 16 1 -0.1880 -11.1757 -0.0112 17 6 0.7462 -12.4657 1.4099 18 7 1.6180 -12.5583 2.3901 19 14 -0.1970 -13.9789 0.8527 20 1 0.0960 -14.2456 -0.5785 21 1 0.2172 -15.1485 1.6685 22 1 -1.6533 -13.7456 1.0246 23 6 1.9832 -5.3404 0.5437 24 6 1.6538 -2.7269 2.5494 25 6 0.4232 -3.5149 3.0029 26 6 0.7181 -2.1413 3.6088 27 1 -0.3634 0.5839 0.8456 28 1 -0.3633 0.4403 -0.9285 29 1 -0.3633 -1.0244 0.0829 30 1 1.8934 -0.5137 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6273 -0.2443 2.1381 35 1 3.1283 -0.6680 1.2805 36 1 3.3920 -3.1541 0.7406 37 1 2.6339 -2.2979 -0.6234 38 1 0.5759 -3.2074 -1.6573 39 1 -0.6042 -5.2681 -2.3039 40 1 -0.1314 -7.3794 -1.1298 41 1 -0.2072 -8.6555 0.5291 42 1 1.0771 -9.0208 -0.6479 43 1 2.3578 -10.2017 1.1173 44 1 1.0731 -9.8358 2.2938 45 1 1.7716 -13.4123 2.8235 46 1 2.7100 -5.3596 1.3423 47 1 2.6295 -3.0823 2.8807 48 1 -0.4120 -3.5886 2.3064 49 1 0.5892 -4.3889 3.6327 50 1 1.0782 -2.1116 4.6372 51 1 0.0774 -1.3113 3.3109 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092008917.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:59 Heat of formation + Delta-G solvation = -5.366560 kcal Electronic energy + Delta-G solvation = -26418.890891 eV Core-core repulsion = 22897.571553 eV Total energy + Delta-G solvation = -3521.319337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 317.210 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.92223 -38.91559 -37.03510 -36.08017 -33.69928 -33.32570 -31.04868 -30.61390 -29.08807 -27.32612 -26.62686 -25.07539 -24.59718 -22.43183 -22.16962 -21.80590 -20.72360 -20.26266 -19.77053 -17.64163 -16.45197 -16.15145 -15.78687 -15.59826 -15.44504 -15.24642 -15.15258 -14.82492 -14.48742 -14.07072 -13.90224 -13.27474 -13.09960 -12.99981 -12.56913 -12.46519 -12.39150 -12.32764 -12.19903 -11.92964 -11.51375 -11.36286 -11.32178 -11.27492 -11.17725 -11.15888 -10.85935 -10.73809 -10.71745 -10.44860 -10.39684 -10.16282 -9.82203 -9.64483 -9.30350 -8.66980 -8.44931 -8.43120 -7.75935 -6.09696 -4.14317 1.52649 1.77997 3.29040 3.33325 3.35144 3.53328 3.72354 3.89009 4.12317 4.41638 4.56662 4.70667 4.75726 4.87634 4.90523 4.97536 5.00391 5.15735 5.17927 5.26539 5.26715 5.36923 5.38816 5.41084 5.43077 5.53747 5.57094 5.58369 5.67098 5.68109 5.73984 5.76607 5.88394 5.90390 5.99753 6.06086 6.08120 6.10981 6.18124 6.23306 6.26105 6.60842 6.62943 6.77969 6.78369 6.85492 7.00554 7.08103 7.52123 7.65154 7.83138 8.10383 8.25018 8.91058 9.49829 11.01810 Molecular weight = 317.21amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.002323 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.252664 B =12050.028747 C =12599.661019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.092 4.092 3 C -0.147 4.147 4 C 0.060 3.940 5 N -0.502 5.502 6 C 0.099 3.901 7 C -0.039 4.039 8 C -0.149 4.149 9 C -0.083 4.083 10 C -0.212 4.212 11 C 0.144 3.856 12 O -0.317 6.317 13 C 0.066 3.934 14 C 0.026 3.974 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.148 4.148 24 C 0.007 3.993 25 C -0.151 4.151 26 C -0.176 4.176 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.027 0.973 44 H 0.027 0.973 45 H 0.264 0.736 46 H 0.121 0.879 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.094 0.906 50 H 0.092 0.908 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 27.202 -3.777 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 C -0.205 4.205 4 C -0.067 4.067 5 N -0.225 5.225 6 C -0.028 4.028 7 C -0.039 4.039 8 C -0.168 4.168 9 C -0.101 4.101 10 C -0.231 4.231 11 C 0.097 3.903 12 O -0.231 6.231 13 C -0.008 4.008 14 C -0.011 4.011 15 C -0.565 4.565 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.167 4.167 24 C -0.102 4.102 25 C -0.189 4.189 26 C -0.214 4.214 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.073 0.927 46 H 0.139 0.861 47 H 0.104 0.896 48 H 0.117 0.883 49 H 0.113 0.887 50 H 0.110 0.890 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.298 27.012 -3.641 27.258 hybrid contribution 0.159 -1.023 -0.141 1.045 sum -0.139 25.989 -3.782 26.263 Atomic orbital electron populations 1.21727 0.94533 1.02871 1.00501 1.21115 0.96878 0.95170 0.97923 1.21825 1.00726 0.96133 1.01808 1.22181 0.97668 0.88119 0.98766 1.61710 1.53631 1.01184 1.05975 1.21035 0.93295 0.92333 0.96151 1.19290 0.96536 0.93012 0.95107 1.20688 0.98777 0.97807 0.99555 1.20855 0.98516 0.92178 0.98570 1.21351 1.02320 0.99724 0.99718 1.19135 0.93143 0.87008 0.91022 1.86163 1.63462 1.15643 1.57793 1.23298 0.94610 0.83380 0.99492 1.19111 0.97921 0.88680 0.95412 1.20935 1.23626 0.92952 1.18961 0.92432 1.24992 0.95287 0.99070 0.94861 1.69964 1.33885 1.25698 1.23229 0.86546 0.80194 0.81916 0.78710 1.20099 1.21124 1.20085 1.20207 1.03417 0.90357 1.02714 1.22395 0.94694 1.04106 0.88997 1.22994 0.99288 0.94193 1.02426 1.23028 1.03143 0.98202 0.97022 0.93454 0.93616 0.91051 0.91272 0.92947 0.92560 0.92756 0.90638 0.94798 0.93691 0.89907 0.86676 0.86428 0.85496 0.93220 0.93239 0.95465 0.95451 0.92664 0.86136 0.89645 0.88267 0.88738 0.88988 0.88613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.13 37.16 0.34 -0.74 16 2 C -0.09 -0.67 2.96 -90.62 -0.27 -0.94 16 3 C -0.15 -0.90 9.19 37.16 0.34 -0.55 16 4 C 0.06 0.48 4.33 -3.83 -0.02 0.46 16 5 N -0.50 -4.82 3.79 -228.09 -0.86 -5.69 16 6 C 0.10 1.01 4.94 -4.98 -0.02 0.99 16 7 C -0.04 -0.49 5.14 -104.65 -0.54 -1.03 16 8 C -0.15 -1.86 9.72 -39.56 -0.38 -2.24 16 9 C -0.08 -1.11 10.04 -39.60 -0.40 -1.51 16 10 C -0.21 -3.38 9.04 -39.43 -0.36 -3.74 16 11 C 0.14 2.53 6.69 -39.22 -0.26 2.27 16 12 O -0.32 -6.62 10.14 -19.44 -0.20 -6.82 16 13 C 0.07 1.44 4.68 37.16 0.17 1.62 16 14 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 15 C -0.53 -14.77 9.11 -34.44 -0.31 -15.08 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 19 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.15 -2.24 9.37 -39.43 -0.37 -2.61 16 24 C 0.01 0.07 4.58 -67.71 -0.31 -0.24 16 25 C -0.15 -1.69 10.46 -26.73 -0.28 -1.97 16 26 C -0.18 -1.61 9.56 -26.73 -0.26 -1.87 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.67 7.58 -51.93 -0.39 0.28 16 30 H 0.07 0.53 6.72 -51.93 -0.35 0.18 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.08 0.60 6.88 -51.93 -0.36 0.24 16 35 H 0.03 0.27 7.99 -51.93 -0.41 -0.15 16 36 H 0.04 0.46 7.79 -51.93 -0.40 0.06 16 37 H 0.08 0.75 6.47 -51.93 -0.34 0.41 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 40 H 0.13 2.01 6.30 -52.49 -0.33 1.68 16 41 H 0.05 1.03 7.66 -51.92 -0.40 0.64 16 42 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.09 0.90 7.97 -51.93 -0.41 0.48 16 48 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.10 0.85 7.80 -51.93 -0.41 0.44 16 LS Contribution 410.28 15.07 6.18 6.18 Total: -1.00 -29.47 410.28 -11.57 -41.04 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -9.24 Total: -0.18 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: -3.17 Total: -25.04 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: -0.13 Total: -31.52 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.20 Total: -6.82 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -29.47 -11.57 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092008917.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.673 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds